The plasma membrane is a complex assembly comprising hundreds of different lipids and proteins. Its properties are temperature dependent and change from cell line to cell line. This raises the question whether measurements at different temperatures and within different cell lines are comparable even when using the same probe. Here, we investigate the dynamics and organization of five different cell lines - Chinese hamster ovary (CHO-K1), Hela, neuroblastoma (SH-SY5Y), fibroblast (WI-38) and rat basophilic leukemia (RBL-2H3) - using up to four different lipid probes. For the outer membrane leaflet we use DiI-C18, a common liquid disordered marker and GFP-GPI, a GFP tagged glycosylphosphatidylinositol anchored protein as a marker for the liquid ordered phase. For the inner membrane leaflet we use PH-PLCδ-RFP, a PIP2 binding domain, and PMT-GFP, a GFP tagged plasma membrane targeting domain that had been shown to be sensitive to the cytoskeleton. We applied Imaging Fluorescence Correlation Spectroscopy (imaging FCS) on a Total Internal Reflection Microscope (TIRFM) which provided diffusion coefficients (D), the Arrhenius activation energy for diffusion (EArr), and the FCS diffusion law intercept (τ0), which report on membrane fluidity, molecular packing, and diffusion mode of the probes (free, domain, or hop diffusion), respectively. The combination of these parameters is unique for each of the probes. Our results showed, that each of the labels is characterized by a unique set of parameters (D, EArr, τ0). Furthermore, the parameters do not stay constant for a particular probe or change in a concerted manner, but can change individually from cell to cell line, indicating that the organization and mode of diffusion of these molecules depends strongly on the environment. This variability has important implications for membrane measurements in general and the comparability of measurements is only given in a particular cell line and at a given temperature.
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