Half-sib Progenies Research Articles

Seleção de progênies de meios-irmãos do composto Isanão VF-1 de milho na safra e safrinha

O aumento significativo da produção de milho na segunda safra no Brasil, principalmente no centro-sul do país, têm estimulado os programas de melhoramento da cultura a selecionar genótipos que sejam adaptáveis às condições climáticas das diferentes épocas de semeadura. Nesse sentido, o objetivo do presente trabalho foi quantificar a interação progênies x épocas de semeadura e verificar seus reflexos no progresso genético com o uso de índice de seleção multivariado para seleção de progênies do Composto Isanão VF-1 de milho. As semeaduras foram realizadas na segunda safra em 2004 e na primeira safra do ano agrícola 2004/05. Foram utilizadas 71 progênies de meios irmãos avaliadas em blocos ao acaso, com três repetições. Os caracteres avaliados foram: altura de plantas, altura de espigas, tombamento, prolificidade e rendimento de grãos. Realizaram-se a decomposição da interação progênies x épocas e foram estimados os ganhos pelo índice de seleção descrito por Mulamba e Mock. Houve predomínio da interação do tipo simples para maioria dos caracteres, exceto para prolificidade, que revelou 86% de interação do tipo complexa. Pelo índice de Mulamba e Mock, os ganhos proporcionais mais adequados para o conjunto de caracteres avaliados foi obtido pelos pesos econômicos atribuídos por tentativas. Os ganhos preditos foram de 1,41, 0,86, -13,03, 9,54 e 16,12% para altura de planta, altura de espiga, tombamento, prolificidade e rendimento de grãos, respectivamente.

Relationship between the first and second crops and estimation of genetic parameters of the second crop on the nutritive value of timothy (Phleum pratense L.)

Improvement of the nutritive value of timothy (Phleum pratense L.) through breeding should result in enhanced livestock productivity. This study investigated the extent of genotype × crop interaction (G × C) between the first and second crops, and the extent of genotype × year interaction (G × Y) and narrow-sense heritability (hN2) of the second crop of the nutritive value of timothy. Twenty-six clones were used to evaluate these interactions in 2007 and 2008, and 17 clones and their half-sib progeny were used to evaluate the hN2 in 2010 in Kunneppu, Japan by analyzing their nutritive value. The content of water-soluble carbohydrate (WSC) was significantly correlated between the two crops in 12 clones with many internode elongation stems (IES) in the second crop and the 2 years, with non-significant effects of G × C in these clones and G × Y. However, the low-digestible fiber (Ob) content and the ratio of Ob to organic cell wall showed weak to medium correlations between the two crops, regardless of IES ratio or the elapsed time of 2 years, with significant effects shown for the two interactions. The hN2 of the three traits was medium to high. These results suggest that, in the second crop, selections for WSC content through the first crop in genotypes with many IES in the second crop, and under multiple environments in other traits are potentially useful; and that recurrent selection which utilizes an additive genetic variance is likely to be effective for the three traits.

Association of single nucleotide polymorphisms in the ANKRA2 and CD180 genes with bovine respiratory disease and presence of Mycobacterium avium subsp. paratuberculosis1

The objective was to determine whether single nucleotide polymorphisms (SNPs) in the ANKRA2 and CD180 genes are associated with incidence of bovine respiratory disease (BRD) and presence of Mycobacterium avium subsp. paratuberculosis (MAP) in cattle. Two independent populations were used. The first population (BRD-affected; N = 90) was composed of 31 half-sib progeny, from a Brahman × Angus sire, that were treated for BRD. Untreated offspring from the sire were selected to serve as controls. The second population (MAP-infected) of 330 animals of unknown parentage was evaluated for the presence of MAP in ileocecal lymph node and classified as positive or negative. Markers in both genes were assessed for association in these two populations. In the BRD-affected population, five SNPs in the ANKRA2 gene were significantly associated (P < 0.05), and two SNPs were highly associated (P < 0.01) with incidence of BRD. In addition, two SNPs in the CD180 gene were found to be associated with this trait. In the MAP-infected population, one SNP in the ANKRA2 gene was significantly associated (P < 0.05) with the presence or absence of MAP, and a SNP in the CD180 gene was highly associated (P < 0.01) with the trait. Haplotypes, using significant markers, showed a positive association with both incidence of BRD (P = 0.0001) and with the presence of MAP (P = 0.0032). Markers in the ANKRA2 and CD180 genes are associated with the ability of the animal to cope with pathogens.

Distribution of allele frequencies at TTN g.231054C &gt; T, RPL27A g.3109537C &gt; T and AKIRIN2 c.*188G &gt; A between Japanese Black and four other cattle breeds with differing historical selection for marbling

BackgroundMarbling defined by the amount and distribution of intramuscular fat, so-called Shimofuri, is an economically important trait of beef cattle in Japan. Our previous study detected 3 single nucleotide polymorphisms (SNPs), g.231054C > T, g.3109537C > T and c.*188G > A, respectively, in the 5' flanking region of the titin (TTN), the 5' flanking region of the ribosomal protein L27a (RPL27A) and the 3' untranslated region of the akirin 2 genes (AKIRIN2), which have been considered as positional functional candidates for the genes responsible for marbling, and showed association of these SNPs with marbling in Japanese Black beef cattle. In the present study, we investigated the allele frequency distribution of the 3 SNPs among the 5 cattle breeds, Japanese Black, Japanese Brown, Japanese Shorthorn, Holstein and Brown Swiss breeds.FindingsWe genotyped the TTN g.231054C > T, RPL27A g.3109537C > T and AKIRIN2 c.*188G > A SNPs by polymerase chain reaction-restriction fragment length polymorphism method, using 101 sires and 1,705 paternal half sib progeny steers from 8 sires for Japanese Black, 86 sires and 27 paternal half sib progeny steers from 3 sires for Japanese Brown, 79 sires and 264 paternal half sib progeny steers from 14 sires for Japanese Shorthorn, 119 unrelated cows for Holstein, and 118 unrelated cows for Brown Swiss breeds. As compared to the frequencies of the g.231054C > T T, g.3109537C > T T and c.*188G > A A alleles, associated with high marbling, in Japanese Black breed that has been subjected to a strong selection for high marbling, those in the breeds, Japanese Shorthorn, Holstein and Brown Swiss breeds, that have not been selected for high marbling were null or lower. The Japanese Brown breed selected slightly for high marbling showed lower frequency than Japanese Black breed in the g.3109537C > T T allele, whereas no differences were detected between the 2 breeds in the frequencies of the g.231054C > T T and c.*188G > A A alleles.ConclusionsBased on this finding, we hypothesized that the pressure of the strong selection for high marbling in Japanese Black breed has increased the frequencies of the T, T and A alleles at the TTN g.231054C > T, RPL27A g.3109537C > T and AKIRIN2 c.*188G > A SNPs, respectively. This study, together with the previous association studies, suggested that the 3 SNPs may be useful for effective marker-assisted selection to increase the levels of marbling.

Predição de valores genéticos na fase juvenil de progênies de meios irmãos de guaranazeiro

This study aimed to predict breeding values and estimation of variance components for growth traits, disease incidence and timing of the production of half-sib progenies of guarana in an experiment conducted in Maues, Amazonas. Thirty-six families were evaluated in an experimental design of randomized blocks with two replications and six plants per plot for the characters plant height and stem diameter (cm), anthracnose resistance and witches (scale 0-4) and fruit production (g / plant). The variance components and genetic parameters were estimated by the procedure REML / BLUP. All characteristics are greatly influenced by the environment. The greatest genetic gain for early production are obtained with the selection of subjects using both the variation between and within the progeny combined through BLUP. The average of the first production of the best individual was 7720 g / plant, which is five times higher than the state average productivity. The largest genetic gains are the characteristics plant height, stem diameter, and early production. Selection for resistance to anthracnose and witches will be more efficient if performed at the level of progeny and not between individuals within progenies.

Phenotypic, additive genetic and environment correlations of maize landraces populations in family farm systems

Knowledge of the association between characters is very important in the genetic breeding programs, but there is limited information about correlations between traits in maize landraces in the current literature. The objectives of this study were to estimate phenotypic, additive genetic and environment correlations among traits in maize landraces, which were cultivated in family farm systems, in order to guide the participatory breeding on maize landraces. Between 294 and 400 half-sib progenies from the six populations were evaluated, subdivided in triple 7X7 and 10X10 lattice design, respectively, with single row plots of 4 m long and spaced 1.00 × 0.20 m. Estimates of correlation coefficients are reported for nine traits: grain yield (GY), relation grain weight per ear weight (GE), ears per plant (EP), days to flower (DF), plant height (PH), ear height (EH), percentage of root loding (%L), percentage of stalk loding (%BS) and percentage of damaged ears (%DE). A high number of additive genetic correlation (rA) was obtained between grain yield and the other traits, in maize landraces populations, cycles and locations. For grain yield, the highest averages of the rA estimate were with EP (0.67), GE (0.47) and %DE (-0.63). In contrast to the current published researches, negative correlations between grain yield and days to flower were observed.

Half-sib progenies evaluation in velvet grass

Velvet grass (Holcus lanatus L.) has a great potential use for winter pasture in subtropical regions due to its good establishment, persistence, high forage production, cold resistance, palatability and tillering ability. The objective of this work was to estimate genetic variability and heritability of agronomic traits and to identify superior progenies. Sixty half-sib progenies were assessed for natural height at the vegetative stage (NH), plant diameter (diameter), heading date (cycle), final height (after flowering) (FH), and tiller number (tillers). Difference among progenies was observed for all traits. Heritability estimates were 38%, 32%, 92%, 57% and 64% for NH, diameter, cycle, FH and tillers, respectively. The highest genetic gain estimate was 30.77 % for the tiller number. There is genetic variability for all the traits and gains after selection among half-sib progenies can be expected.

Repetibilidade em características do fruto do maracujazeiro

A análise de sucessivas medições de uma característica em um grupo de indivíduos é um procedimento desejável no melhoramento genético de culturas, pois espera-se que a superioridade ou inferioridade inicial de um indivíduo em relação aos demais mantenha-se ao longo das medições. A veracidade dessa expectativa pode ser aferida pelo coeficiente de repetibilidade das características avaliadas. Os objetivos deste trabalho foram (1) determinar o coeficiente de repetibilidade pelos métodos da Análise de Variância, Componentes Principais (matriz de correlação e covariância) e Análise Estrutural das seguintes características: massa média, comprimento longitudinal, diâmetro equatorial, massa média da polpa e da casca e espessura da casca do fruto; e (2) determinar o número mínimo de avaliações para um eficiente processo de seleção de genótipos de maracujazeiro-azedo. O trabalho foi desenvolvido no Departamento de Fitotecnia da Universidade Federal de Viçosa, analisando-se 20 progênies de meios-irmãos segregantes de maracujazeiro-azedo. Observaram-se diferenças entre as estimativas dos coeficientes de repetibilidade obtidos pelo método da análise da variância e pelos métodos multivariados, havendo superioridade nas estimativas com o emprego dos últimos métodos nos programas de melhoramento do maracujazeiro-azedo. O método dos componentes principais, com base na matriz de covariância, sempre apresentou estimativas maiores, principalmente para espessura da casca e comprimento longitudinal do fruto, sendo esse método mais eficiente para a estimação do coeficiente de repetibilidade das características avaliadas. A realização de 18 medições nos frutos de maracujazeiro-azedo será suficiente para predizer o valor real dos indivíduos com 90% de acurácia no primeiro ano de produção, com relação à massa fresca do fruto, massa de polpa e casca, comprimento longitudinal e diâmetro equatorial.

Genetic evaluation of polycross hybrids of sweet potatoes

Sweet potato is an important staple crop in Papua New Guinea (PNG). Evaluation of polycross hybrids of sweet potato to identify tuber bearing progenies was conducted at PNG University of Technology farm, LAE, between March and November 1991. Sweet potato seeds were obtained from a polycross nursery of nine sweet potato clones adapted to PNG. Nine hundred and eight seeds were scarified and sown. Out of 689 germinated and established seedlings, 77 mature plants (11%) were selected as having the potential to produce tuberous roots. These selected progenies were advanced into their first clonal generation for further yield evaluation. The highest yielding half-sib progeny was obtained from a hybrid parent UIB-52. Heritability values for tuber yield, tuber number and vine weight were 0.80, 0.62 and 0.10, respectively. Parental clones UIB-37, K-42 and Merlkan showed good general systems in improving sweet potato in the lowlands of PNG.

NM+: software implementing parentage‐based models for estimating gene dispersal and mating patterns in plants

NM+ is computer software designed for making inferences on plant gene dispersal and mating patterns by modelling parentage probabilities of offspring based on the spatially explicit neighbourhood model. NM+ requires a sample of mapped and genotyped candidate parents and offspring; however, offspring may optionally be assigned to single maternal parents (forming so-called half-sib progeny arrays). Using maximum likelihood, NM+ estimates a number of parameters, including proportions of offspring due to self-fertilization, pollen immigration from outside of a defined study site, parameters of pollen (and/or seed) dispersal kernels (exponential-power, Weibull, geometric or 2Dt) and selection gradients relating covariates (phenotypic traits) with male (and/or female) reproductive success. NM+ allows for missing data both in parents and in offspring. It accounts for null alleles and their frequencies can optionally be considered as estimable parameters. Data files are formatted in a table-like structure so they can be easily prepared in a spreadsheet software. By default NM+ is for studying plant populations, however, it can be used for any organism as long as data requirements and model assumptions are met. NM+ runs under Windows, but it can be launched under Linux using WINE emulator. NM+ can be downloaded free of charge from http://www.genetyka.ukw.edu.pl/index_pliki/software.htm.

Quantitative trait loci for leg weakness traits in a Landrace purebred population

Leg weakness in pigs is a serious problem in the pig industry. We performed a whole genome quantitative trait locus (QTL) analysis to find QTLs affecting leg weakness traits in the Landrace population. Half-sib progeny (n = 522) with five sires were measured for leg weakness traits. Whole genome QTL mapping was performed using a half-sib regression-based method using 190 microsatellite markers. No experiment-wide significant QTLs affecting leg weakness traits were detected. However, at the 5% chromosome-wide level, QTLs affecting leg weakness traits were detected on chromosomes 1, 3, 10 and 11 with QTL effects ranging from 0.07 to 0.11 of the phenotypic variance. At the 1% chromosome-wide level, QTLs affecting rear feet score and total leg score were detected on chromosomes 2 and 3 with QTL effects of 0.11 and 0.13 of the phenotypic variance, respectively. On chromosome 3 and 10, some QTLs found in this study were located at nearby positions. The present study is one of the first reports of QTLs affecting fitness related traits such as leg weakness traits, that segregate within the Landrace population. The study also provides useful information for studying QTLs in purebred populations.

Changes in Mean and Genetic Variance During Two Cycles of Within-family Selection in Switchgrass

Switchgrass (Panicum virgatum L.) is a candidate for cellulosic bioenergy feedstock development. Because biomass yield is the most important biological factor limiting the commercial development and deployment of switchgrass as a cellulosic bioenergy feedstock efforts must be undertaken to develop improved cultivars. The objectives of this study were (1) to conduct two cycles of within-family selection for increased biomass yield in WS4U switchgrass and (2) to simultaneously evaluate progress from selection relative to the mean of the original WS4U population. Each of the 150 WS4U families was subjected to phenotypic selection for vigor, seed production, and disease resistance. The mean of all families increased relative to the original WS4U population by 0.36 Mg ha−1 cycle−1 for biomass yield and 3.0% cycle−1 for ground cover. Gains were uniform across two diverse evaluation locations, indicating that selection gains were robust relative to some variation in Hardiness Zone and soil type. Two cycles of within-family selection led to a homogenization of the diverse families, creating novel recombinations and reducing the family genetic variance to near zero. It is hypothesized that selection and recombination has led to replication of favorable alleles across pedigrees with differing genetic backgrounds, increasing the likelihood of including these favorable alleles in the progeny of future selections. The rate of genetic progress is expected to increase in future cycles of selection with a combination of within-family phenotypic selection and half-sib progeny testing of selected families.

Predição de parâmetros e valores genéticos para caracteres de crescimento e produção de látex em progênies de seringueira

O trabalho objetivou estimar parâmetros e valores genéticos para os caracteres altura, diâmetro, produção de látex e produtividade de progênies de seringueira. As progênies meio-irmãos foram estabelecidas sob delineamento de blocos ao acaso, com 28 tratamentos (progênies), cinco repetições e dez plantas por parcela. Aos três anos de idade, as progênies foram avaliadas quanto aos caracteres: a) altura total (cm); b) diâmetro (mm); c) Produção de borracha seca (g) e produtividade (g cm-2). As estimativas dos coeficientes de herdabilidades individuais (0,33; 0,24 e 0,51) para os caracteres altura, diâmetro e produtividade, respectivamente, foram consideradas expressivas. Para o caráter produção de borracha seca, a estimativa do coeficiente de herdabilidade individual, no sentido restrito (9%), embora de baixa magnitude, revela excelente possibilidade de seleção, pois conduziram a estimativa da herdabilidade, em nível de médias de família, a um valor equivalente a 68%. A acurácia entre os valores genéticos preditos e os verdadeiros foram de 0,80 para altura, 0,76 para diâmetro, 0,62 para produção de borracha seca e 0,86 para produtividade. As estimativas de herdabilidades individuais associadas às de médias de progênies podem maximizar os ganhos genéticos com a seleção na população. A inclusão do caráter produtividade foi promissora e deve ser utilizada na seqüência das avaliações, subsidiando o programa de melhoramento genético da espécie no Estado de Mato Grosso do Sul.

A New Breeding Strategy for Pinus radiata in New Zealand and New South Wales

AbstractA new breeding strategy is presented for the Radiata Pine Breeding Company, a New Zealand based research consortium, that drives the breeding program for Pinus radiata for both the New Zealand and New South Wales based Australian forest plantation industry. The new strategy builds on the existing base for P. radiata, and on the last strategy review in 2000. The new strategy comprises a large open-pollinated (OP) Main Population (MP) with 500 female parents and two sublines (250 female parents per subline). The MP will be tested using alpha designs, single-tree plots and incomplete blocks to maximise efficiency. Each subline will be tested on four sites, geographically distant from the other subline. The MP will be managed in discrete generations. Selection of the next generation will be using a combination of backward and forward selection, but the strict control of inbreeding with identified lineage will rely on the development of parental reconstruction for OP progeny. There are alternatives to this, however, such as estimating the group coancestry and accepting some additional increase in inbreeding. This is a new and significant departure from previous breeding strategies for P. radiata in New Zealand. There will also be a single, small Elite Population (EP), tested 50% as progeny and 50% as clones. Twenty four parents will be tested each year as clones and 24 as seedling progeny with some overlap between the two. It is expected that the clonal population will capture the greatest gains in traits with low heritabilities, and the half-sib progeny will capture the greatest gains in traits with high heritabilities. The two sublines will be maintained in the EP, and breeding will be managed as a rolling front with trials established every year, while trials of the MP will be established every 10 years.

Inheritance Pattern of Growth and Wood Traits in Teak (Tectona grandis L.f.).

Abstract Inheritance pattern of wood traits, especially heartwood/ sapwood percentage and specific gravity and interactions of wood traits with other growth traits were investigated in a 27-year-old half-sib progeny trial of teak. Wood traits showed highly significant variation for specific gravity, heartwood and sapwood percentage at family level. There was non-significant family vs. replication variation for these traits. Among the growth traits, there was significant variation for height and girth. Families and individual trees showed varying levels of heritability. Among the growth traits, height showed high heritability (individual tree heritability, h2 (i) = 34.3%; family heritability, h2 (f ) = 34.1%) followed by girth (h2 (i) = 19.4%; h2 (f ) = 31.4%). Among the wood traits, maximum heritability values were obtained for sapwood percentage (h2 (i) = 76.6%; h2 (f ) = 70.7%) and heartwood percentage (h2 (i) = 76.9%; h2 (f ) = 69.7%). Specific gravity exhibited heritability values of 29.1 and 41.8%, at individual tree and family level, respectively. Family heritability was higher than single-tree heritability for specific gravity; single-tree heritability exceeded family heritability for heartwood percentage. Specific gravity exhibited significant positive genotypic correlation with heartwood percentage suggesting that improvement in heartwood percentage would lead to a correlated improvement in specific gravity. Heartwood percentage showed significant positive correlation with growth traits viz., height and girth. Some of the families showed good GCA for growth and wood traits investigated. The good general combiners identified in the present study can be used for establishment of advanced generation seed orchards and breeding arboreta for improvement of teak for specific or combination of above traits.

Adaptabilidade e estabilidade da produção de borracha e seleção em progênies de seringueira

Os objetivos deste trabalho foram determinar a interação genótipo x ambiente e a estabilidade e adaptabilidade da produção de borracha em progênies de seringueira (Hevea brasiliensis (Willd. ex A. Juss.) Müll. Arg.), bem como estimar o ganho genético com a seleção dos materiais mais produtivos. Foram utilizadas três populações de progênies de meios-irmãos de seringueira, cultivadas em três municípios do Estado de São Paulo. Os experimentos foram instalados em delineamento de blocos ao acaso com 22 progênies, 6 repetições e 10 plantas por parcela, com espaçamento de 1,5x1,5 m. Aos três anos de idade, as progênies foram avaliadas quanto à produção de borracha seca utilizando-se o teste precoce de produção Hamaker Morris-Mann. As análises de estabilidade e adaptabilidade foram obtidas por modelos lineares mistos Reml/Blup. A seleção das cinco progênies mais produtivas proporcionou ganho genético de 8,16%. A pequena variação de desempenho das progênies mais produtivas, nos três locais de plantio, indica boa estabilidade fenotípica dos genótipos. As três progênies mais produtivas apresentam superioridade de produção de 14 a 19% sobre a média geral, nos três ambientes. As progênies selecionadas nos três locais podem ser indicadas para utilização na sequência de programas de melhoramento genético e podem levar à maximização na produção de látex.

Comparing the performance of analytical techniques for genetic parentage of half-sib progeny arrays

The prevalence of female multiple mating in natural populations is important for many questions in mating system evolution. Several statistical techniques use genetic data to estimate the number of fathers that contribute gametes to broods, but they have not been widely compared to assess the magnitude of differences in their performance. With a combination of new data and reanalysis of previously published data, we compared five analytical approaches: (1) allele-counting, (2) parental reconstruction in GERUD, (3) a Bayesian probability model to estimate the frequency of multiple mating (FMM), (4) computer simulations based on population allele frequencies in HAPLOTYPES and (5) Bayesian parental reconstruction in PARENTAGE. The results show that choice of analysis technique can significantly affect estimates of sire number. Estimates from GERUD conformed exactly to results obtained from strict exclusion of potential sires in an experimental context. However, estimates yielded by HAPLOTYPES and PARENTAGE sometimes exceeded the numbers from GERUD by as much as 120 and 55%, respectively. We recommend GERUD over these other approaches for most purposes because of its accuracy and consistency in this analysis. Our novel genetic data set allowed us to investigate the extent and frequency of multiple paternity in a marbled salamander (Ambystoma opacum) population in South Carolina, USA. A. opacum contrasted with other salamander species by having relatively low levels of multiple paternity (only 31-54% compared with 71-96%). Although A. opacum had the lowest level of multiple paternity under all analytical approaches used here, the magnitude of differences among species varied.

Variabilidade genética em progênies de meios-irmãos de coentro

Grande número de produtores envolve-se com o cultivo do coentro durante todo o ano, tornando a cultura importante social e economicamente. Praticamente em toda a região Nordeste utiliza-se a cultivar Verdão. Estudos da variabilidade genética do coentro são importantes, tendo em vista o melhor planejamento de programas de melhoramento genético. Desta forma, este trabalho teve como objetivo quantificar a variabilidade genética de características agronômicas do coentro cultivar Verdão, avaliando-se progênies de meios-irmãos potencialmente úteis no melhoramento genético. O trabalho foi desenvolvido na Universidade Federal Rural de Pernambuco, em casa de vegetação, em blocos casualizados, com cinco repetições e parcelas de 28 plantas, colocadas em dois vasos. Os tratamentos foram compostos por 55 progênies de meios-irmãos da cultivar Verdão. O teste t detectou significância a 1 e a 5% de probabilidade entre as correlações genotípicas, fenotípicas e ambientais. A herdabilidade no sentido amplo variou de 7,19 (peso médio de plantas) a 81,09 (número de plantas pendoadas). Para a razão entre os coeficientes de variação genético e ambiental (CVg /CVe), obteve-se de 0,27 (peso médio de plantas) a 2,07 (número de plantas pendoadas), indicando que a seleção contra o pendoamento apresenta as condições mais favoráveis em termos de ganhos genéticos imediatos. A correlação genotípica entre altura de plantas não pendoadas e número de plantas pendoadas foi alta e significativa.

Inferring unknown genotypes of sires at codominant deoxyribonucleic acid markers in half-sib families1

Deoxyribonucleic acid from sires is usually not available from experiments aimed at QTL mapping for traits of the dam in cow-calf operations and free range sheep populations. In this study, methods to reconstruct sire genotypes using genotype information from large half-sib progeny were developed. The methods are based on 1) all offspring genotypes are compatible with more than 1 genotype for the sire, but 1 of the genotypes is more likely than the others when comparing the proportion of the different genotypes among offspring with its expected values assuming Mendelian inheritance, or 2) all offspring genotypes are compatible with just 1 possible genotype for the sire in the pedigree. A Monte Carlo simulation experiment was carried out to test the methods with 1 million replicates. A 99.7% correct sire genotype reconstruction was obtained with 30 offspring and a DNA marker with 3 or more alleles segregating at similar frequencies. Methods to test for incorrect paternity in half-sib offspring without DNA from the sire were also developed. A maximum likelihood method was developed to test for departure of Mendelian segregation due to a contaminating sire whose offspring are fully compatible with the genotype of the pedigree sire. A large number of offspring was needed to detect offspring from a contaminating sire (1,000 progeny for a power of 0.99 and proportion of true paternity of the pedigree of 0.80). Multi-marker methods were also developed for detection of paternity misidentification. Probabilities of detection of wrong paternity for a contaminating sire not sharing any alleles with the sire in the pedigree were 0.95 and 0.99 when using 5 and 10 markers in 30 half-sib offspring, respectively. The methods to infer the sire genotypes were tested with 49 progeny of a Merino ram whose genotype was inferred for 7 microsatellites. Methods to infer genotype of the sire are feasible, but QTL mapping experiments without DNA from the sires are more costly due to the need of genotyping markers in progeny for which the sire in the pedigree is homozygous.

Predicting the genetic gain in the Brazilian white maize landrace

The objectives of this research were to evaluate the genetic variability and predict genetic gain in the white maize landrace rescued in Barbacena, Minas Gerais, Brazil. The Brazilian maize landraces have economic and social importance for certain areas in Brazil, and research on this germplasm is very important for local food security. Three experiments were carried out with 100 half-sib progenies, in Campos dos Goytacazes, RJ, Coimbra and Barbacena, Minas Gerais, Brazil. These sites were chosen for their soil and climatic differences. An analysis of variance was significant among the progeny for all characters, indicating the presence of genetic variability between the three populations. In Campos dos Goytacazes and Coimbra, the genetic variation of the white maize landrace was responsible for most of the phenotypic variance in grain yield and can be used in selection cycles. There was no significant genetic variance in grain yield in Barbacena. For the white maize landrace it was concluded that: the characters of the component of productivity such as plant density and number of plants with kernels can produce indirect genetic gain for grain yield and are suitable for breeding; prebreeding of the maize landrace is necessary before being used directly in the elite germplasm; the population contains high genetic variability and opportunities for genetic gain; the average agronomic traits are suitable only for traditional production systems with few inputs, and polyculture; the difference between environments produces specific responses in the progeny i.e. there is a progeny x environment interaction.