Habitat Utilization Patterns Research Articles

Influence of habitat utilization strategies on trace element signatures in egg contents of green turtles nesting on Xisha Islands, South China Sea

Habitat utilization significantly influences the accumulation of chemical pollutants, including trace elements (TEs), in the tissues of large marine organisms. Previous research has demonstrated that sea turtles nesting in the same location may employ distinct foraging strategies. This study investigated the influence of habitat use strategies on the concentrations of 16 TEs in the eggs of green turtles (Chelonia mydas) nesting on the Xisha Islands. The analysis incorporated stable carbon (δ13C) and nitrogen (δ15N) isotopes, as well as characteristic elements. Additionally, inter-relationships between TEs were examined. The nesting female green turtles were categorized into two foraging groups based on isotopic signatures, namely oceanic (δ13C values: −21.5 to −17.0 ‰; δ15N values: 7.10 to 12.5 ‰) and neritic (δ13C values: −14.4 to −9.95 ‰ and δ15N values: 5.10 to 10.0 ‰). Different TE patterns were observed in the egg contents of these two groups. The neritic group exhibited elevated levels of V and Cu, which positively corrected with δ13C values. Conversely, the oceanic group displayed higher levels of Zn, Cd, Se, Sn, As and Hg, which positively associated with δ15N values. This distribution pattern is attributed to variations in background TE concentrations in the respective foraging habitats. Additionally, prey items and trophic levels of green turtles may contribute to the observed inter-group differences in TE concentrations (e.g. Zn, As, Se, Sn) found in their eggs, warranting further research. This study provides valuable information about habitat utilization patterns and TE distribution in green turtles nesting on the Xisha Islands. The findings enhance our understanding of TE accumulation mechanisms in turtle tissues and eggs, which is significant for the conservation of this endangered species, the green sea turtle.

Ecological dynamics and coexistence patterns of wild and domestic mammals in an abandoned landscape

The issue of agricultural land abandonment in southern Europe has raised concerns about its impact on biodiversity. While abandoned areas can lead to positive developments like creating new habitats and restoring native vegetation, they can also result in human–wildlife conflicts, particularly in areas with extensive farming and free‐ranging livestock. To understand habitat selection and use of livestock and wild ungulates, it is essential to study their spatial and temporal distribution patterns. In this context, we conducted a long‐term large mammal monitoring project using camera traps in the Peneda‐Gerês National Park in northern Portugal. Our primary focus was on exploring habitat preferences, occupancy dynamics, and potential spatial use correlations between domestic and wild species, utilizing dynamic occupancy models. Most wild species exhibited stable area use patterns, while domestic species experienced marginal declines, and the Iberian ibex displayed signs of repopulation. We observed distinct effects of habitat variables on occupancy, colonization, and extinction, revealing species‐specific patterns of habitat utilization. Human disturbance had a notable impact on domestic species but did not affect wild ones. Camera sensitivity emerged as a critical factor, enhancing detection probability for all species. Additionally, habitat and weather variables exerted varying effects on detection probabilities, underscoring the necessity of accounting for these factors in modeling the detection process. We found shared habitat preferences between cattle and horses, both positively correlated with wolves, suggesting potential human–wildlife conflicts. Despite extensive spatial overlap, domestic and wild species seem to exhibit ecological independence possibly due to distinct strategies and low predation pressure. Overall, the study emphasizes the multifaceted factors influencing habitat use. The observed species associations contribute to understanding ecological relationships and potential resource competition, emphasizing the importance of considering environmental variables for effective wildlife conservation and management.

Temperature-related movement and habitat utilization patterns of Dall’s porpoises, small cetaceans seasonally migrating into the subarctic Pacific

Under global warming, impacts on animals’ spatial distribution in response to ocean warming have been anticipated for marine endotherms like cetaceans. Therefore, determining the distribution patterns of small cetaceans is key to understanding how their distributional patterns are susceptible to changing oceanic environments. To investigate the effect of environmental variations on distributional patterns of small cetaceans on a fine scale, we attached eight satellite tags to Dall’s porpoises bycaught in Eastern Hokkaido. After release, the tagged porpoises moved into the western North Pacific and its marginal sea, the Sea of Okhotsk. Our tagging results showed that the habitat ranges of Dall’s porpoises were restricted by water temperature. To avoid warm water, tagged porpoises changed their directions when they faced surface thermocline of 17°C. Dall’s porpoise tracked for the longest periods (116 days) showed southwestward movement after entering the Sea of Japan through the Soya Strait, while the other seven tagged porpoises stayed in the Sea of Okhotsk and off the Pacific coast around Hokkaido and Chishima islands for the entire tracking periods. Vertical movements were also recorded by these tags. Long-term tracking of Dall’s porpoises’ movement provides important insights into seasonal migration patterns, particularly for fall southward migration, which has not been well investigated compared with spring northward migration. Information on seasonal migration, distribution and percentage of time spent at the surface will improve our approach to monitoring Dall’s porpoise populations and discover important knowledge for improving the conservation and management of the population.

Local Variation in Feeding Ground Utilization of Dugongs (Dugong dugon) Across Two Intertidal Seagrass Beds in Talibong Island, Thailand

In this study, we describe the population characteristics and residency patterns of dugongs (Dugong dugon) across two intertidal seagrass beds in Talibong Island, Thailand: Site A, covering an area of 2.0 × 105 m2, and Site B, covering an area of 2.8 × 105 m2. Transect and individual identification surveys were conducted under clear water conditions using drones: 16 separate days over 11 months at Site A and 10 separate days over 3 months at Site B. Sixty-four individuals were identified from 180 videography sessions. The results confirmed at least two distinct patterns of seagrass habitat utilization among sites located approximately 5 km apart. Site A was characterized by a lower population density, higher year-round site fidelity, occupancy by relatively large individuals, and an absence of feeding aggregations. In contrast, Site B was characterized by a higher population density, lower site fidelity, occupancy by individuals with a wider range of body lengths, and the presence of feeding aggregations. The average population density at Site B was three to five times higher than that at Site A. Site A had a median nearest neighbor distance of 320 m with no significant bias in its distribution, whereas Site B had a median of 20 m with a significant bias. The mean site fidelity index for Site A (0.62 ± 0.08; n = 16) was significantly higher than that for Site B (0.39 ± 0.14; n = 10). Dugongs at Site A might have monopolized this site to some extent, while those at Site B might have benefited from increased opportunities for social interaction provided by aggregations. These findings highlight the importance of fine-scale monitoring of feeding ground utilization by dugongs, taking into consideration individual-specific details such as body lengths and resighting rates for a better understanding of their spatial distribution.

Dam‐induced difference of fish habitat distribution in the fluctuating backwater zone of the Three Gorges Dam

AbstractChanges in fish habitat induced by dam construction in the downstream river have been well documented in an increasing body of literature. Fish habitats in the backwater zone of dams have undergone dramatic changes, which have still remained poorly understood. This study aims to provide a more complete understanding of fish habitat distribution and clarify fish habitat utilization patterns in the upstream dam in order to adopt effective remediation activities. This study was conducted in the Three Gorges Dam (TGD) as it is the world's largest installed capacity hydropower station, with a backwater zone length of about 660 km. Four major Chinese carp (FMCC) were selected as target fish species, and fish habitat distribution upstream of TGD was assessed by integrating the swimming ability and environmental preference of different fish species into their critical life stages. Assessment results at different life stages of the target fish species showed that June was a critical period for spawning activities FMCC in the fluctuating backwater zone of TGD. The riverbank was an important feeding habitat for FMCC, and the high‐velocity flow in the centre of the channel exceeded the limits of the swimming ability of target fish. The fish habitat distribution in the fluctuating backwater zone of TGD was heavily affected by runoff from April to September and by dam operation from October to March of the next year. This work provide valuable information about river conservation and management in the upstream of TGD.

Habitat Utilization and Niche Partitioning in Starling Birds at Federal University Dutse, Nigeria

The micro habitat or niche which a species occupies at a particular time in an ecosystem may give some clue to niche partitioning with regards to such species in that ecosystem. This study aimed to assess habitat utilization patterns as cue to niche partitioning in starling birds of Federal University Dutse. Point count bird census technique was used to survey starling bird at sixteen (16), randomly selected points, across various habitat types within the study location. All starling birds seen or heard were identified, counted and recorded. The habitat or niche where they were sited was also noted. The R Statistical software, version 3.3 was used for data analysis. The result showed that starling birds species diversity differed significantly by study area points (p < 0.001), habitat types (p < 0.05) and marginally by occurring niche (p = 0.06). Point 13 had the highest species diversity, habitat types consisting farmlands and buildings had the highest species diversity and the highest starling diversity was observed on trees. Starling bird abundance on the other hand, differed significantly across study points (p = 0.05) and marginally across occurring niches (p = 0.06). Starling bird abundance was highest at study area point 5 and on trees.

Diversity, abundance, and habitat utilization of medium and large-sized mammals in Debre-Libanos Monastery Forest, central part of Ethiopia

Abstract The present study aimed to estimate the diversity, abundance, and habitat utilization patterns of medium and large-sized mammals in the Debre-libanos Monastery forest, Ethiopia. The survey was conducted from December 2019 to October 2020, considering the wet and dry seasons. A stratified sampling design was applied, dividing the study area into four habitat types based on the vegetation composition and cover (i.e., Natural forest, Plantation, Cliff/Rocky, and Settlement). Both direct and indirect observations were used along the transect lines to identify mammal species. Indirect evidence included tracks, dens, droppings, hair, and other signs. Nineteen transect lines of 0.5‒1 km in length were established. The distance between transects was 200 m to avoid double counting. A total of 11 medium and large-sized mammal species belonging to 6 orders and eight families were identified during the study period. Carnivores and primates were the dominant orders, accounting for 36.4% and 27.3% of the species, respectively. Among primates, the Gelada baboon (Theropithecus gelada) is endemic to Ethiopia. The highest diversity of medium and large-sized mammals was observed in the natural forest during the dry season (Hʹ = 1.44), and the lowest diversity was recorded in the settlement during the dry season (Hʹ = 0.77). The abundance of different mammal species varied significantly from an even distribution (χ2 = 7344.9, df = 10, p < 0.001) and was not consistent among the four habitat types (Species × Habitat type interaction; Fisher-Freeeman-Halton exact test; χ2 = 649.3, df = 30, p < 0.001). High similarity in species composition was observed between the natural forest and plantation (SI = 0.94), whereas low similarity occurred between the cliff/rocky and settlement habitat types (SI = 0.18). Gelada baboon abundance was high; therefore, communities and government bodies must pay attention and conserve this species in the area.

Behavioral activity and range patterns of the endemic Gelada monkey (Theropithecus gelada) in and around Jer Silase Monastery in North Shoa Zone, Ethiopia

Abstract The present study investigated the activity, range, and habitat utilization patterns of the Endemic Gelada Monkey (Theropithecus gelada) in and around Jer Silase Monastery in North Shoa Zone, Ethiopia. The study was conducted from January 2021 to October 2021 by considering the dry and wet seasons and stratifying the study area into natural forest, cliff/rocky, and farmland habitats. An instantaneous scan sampling method was employed to collect behavioral data. The activity patterns of three selected focal groups of Gelada monkeys were studied. GPS points of their predominant behavioral activities were recorded daily every 15 minutes from 7:00 to 18:00 for 12 days every month. A total of 5,592 individual activity records were obtained from 2312 scan samplings taken over 120 study days. Feeding comprised 54.52% of the activity time, followed by moving at 20.67% and socialization at 11.95%. A multivariate analysis of variance (MANOVA) revealed that the time allocated to different activity types varied significantly over the year with the month (Roy’s Largest Root = 2.7, F4,22 = 13.2, p < 0.001, partial η2 = 0.653). The longest mean monthly travel distance was 2817.61 ± 582.57 m, recorded at the Cliff/rocky habitat during the wet season. Gelada monkeys’ daily range length and home range size extended more in the dry season. These findings may be explained by reduced habitat quality associated with livestock grazing, agricultural expansion, and charcoal production. Therefore, appropriate conservation measures should be implemented to minimize such adverse effects and conserve the endemic Gelada Monkey.

A roadmap for ladybird conservation and recovery.

Ladybirds (Coleoptera: Coccinellidae) provide services that are critical to food production, and they fulfill an ecological role as a food source for predators. The richness, abundance, and distribution of ladybirds, however, are compromised by many anthropogenic threats. Meanwhile, a lack of knowledge of the conservation status of most species and the factors driving their population dynamics hinders the development and implementation of conservation strategies for ladybirds. We conducted a review of the literature on the ecology, diversity, and conservation of ladybirds to identify their key ecological threats. Ladybird populations are most affected by climate factors, landscape composition, and biological invasions. We suggest mitigating actions for ladybird conservation and recovery. Short-term actions include citizen science programs and education, protective measures for habitat recovery and threatened species, prevention of the introduction of non-native species, and the maintenance and restoration of natural areas and landscape heterogeneity. Mid-term actions involve the analysis of data from monitoring programs and insect collections to disentangle the effect of different threats to ladybird populations, understand habitat use by taxa on which there is limited knowledge, and quantify temporal trends of abundance, diversity, and biomass along a management-intensity gradient. Long-term actions include the development of a worldwide monitoring program based on standardized sampling to fill data gaps, increase explanatory power, streamline analyses, and facilitate global collaborations.

Bird eggs or wheat: Assessing the impact of an overabundant crow species in a landscape mosaic in the Negev desert of Israel

The intensification of land alterations promotes the spread of invasive and overabundant species. Yet, controlling such species is not always derived from extensive impact assessments. We explored the consequences of the Hooded Crow (Corvus cornix) expansion into the arid region of Israel on the local biota. Crow activities and their potential effects were examined in a nature reserve and its surrounding agricultural lands. We used line transect counts and Global Positioning System (GPS) tagging to assess crow habitat utilization patterns. To measure crow impact on the local community, we compared artificial nest predation rates between agrarian and natural land types. Compositional analysis of the GPS-tagged crows' home range indicated a preference for arable lands, with low utilization of natural areas, limited to the vicinity of the nature reserve edges. Accordingly, Hooded Crows were among the dominant nest predators, mainly in agricultural lands or near their borders. These findings suggest that crow impact on natural habitats is low and limited to highly exploratory individuals. As crow abundance is expected to continue increasing, we call for short and long-term management actions, including establishing agri-environmental schemes to boost the local community's resistance to overabundant and invasive species.

Mesoscale movement patterns of common bottlenose dolphins along Kuroshio Current and its bifurcation

AbstractIn the waters off Japan, the patterns of the Kuroshio Current (KC) and its bifurcations are highly variable, which significantly affect the physical and biological environments. Knowledge about species' habitats of marine apex predators such as cetaceans and their variability is fundamental to understand not only their population structures but also their ecosystem structures related through bottom‐up and top‐down trophic linkages. In dynamic ocean environments, however, such crucial information has not been provided adequately by snapshot‐based conventional approaches, such as sighting surveys. Spatiotemporal habitat utilization patterns of the common bottlenose dolphin (Tursiops truncatus) were investigated using fin‐mounted Advanced Research and Global Observation Satellite (ARGOS) tags. Behavioral states at each tracking location were categorized into transiting‐ or area‐restricted searching (ARS) modes based on Bayesian state‐space model. Twelve satellite‐tracked dolphins showed different movement patterns. Their habitat ranges were estimated by minimum convex polygons (MCPs), and movement patterns were classified into three types (four animals each of eastward, offshore, and westward movements) based on MCP overlapping among tagged dolphins. The animals that restricted their habitat to the coastward side of the KC (CSKC) tended to show ARS modes more frequently. Estimated locations of these animals corresponded well with cold coastal waters. On the other hand, offshore movements corresponded well with clockwise flow generated by the bifurcation of the KC, and those dolphins were likely straying into less productive waters. These patterns suggest that common bottlenose dolphins off the southern coast of Japan mainly utilize productive CSKC waters but occasionally move to offshore waters.

Water column structure influences long-distance latitudinal migration patterns and habitat use of bumphead sunfish Mola alexandrini in the Pacific Ocean

Satellite-tracking of adult bumphead sunfish, Mola alexandrini, revealed long-distance latitudinal migration patterns covering thousands of kilometers. Horizontal and vertical movements of four bumphead sunfish off Taiwan were recorded with pop-up satellite archival tags in 2019–2020. Two individuals moved northward and traveled to Okinawa Island and Kyushu, Japan and two moved southwards; crossing the equator, to Papua New Guinea and New Caledonia. During daytime, bumphead sunfish descended below the thermocline and ascended to mixed layer depths (MLD) during nighttime. The N–S migrants, however, demonstrated different habitat utilization patterns. Instead of using prevailing currents, the northward movements of sunfish cohorts exhibited extensive use of mesoscale eddies. Fish in anticyclonic eddies usually occupied deeper habitats whereas those in cyclonic eddies used near-surface habitats. On northward excursions, fish spent most of their time in regions with high dissolved oxygen concentrations. Southward movement patterns were associated with major currents and thermal stratification of the water column. In highly stratified regions, fish stayed below the thermocline and frequently ascended to MLD during daytime either to warm muscles or repay oxygen debts. These results for bumphead sunfish present important insights into different habitat use patterns and the ability to undergo long-distance migrations over varying spatial-temporal scales and features.

The Effects of Temperature Acclimation on Swimming Performance in the Pelagic Mahi-Mahi (Coryphaena hippurus)

Mahi-mahi (Coryphaena hippurus) are a highly migratory pelagic fish, but little is known about what environmental factors drive their broad distribution. This study examined how temperature influences aerobic scope and swimming performance in mahi. Mahi were acclimated to four temperatures spanning their natural range (20, 24, 28, and 32°C; 5–27 days) and critical swimming speed (Ucrit), metabolic rates, aerobic scope, and optimal swim speed were measured. Aerobic scope and Ucrit were highest in 28°C-acclimated fish. 20°C-acclimated mahi experienced significantly decreased aerobic scope and Ucrit relative to 28°C-acclimated fish (57 and 28% declines, respectively). 32°C-acclimated mahi experienced increased mortality and a significant 23% decline in Ucrit, and a trend for a 26% decline in factorial aerobic scope relative to 28°C-acclimated fish. Absolute aerobic scope showed a similar pattern to factorial aerobic scope. Our results are generally in agreement with previously observed distribution patterns for wild fish. Although thermal performance can vary across life stages, the highest tested swim performance and aerobic scope found in the present study (28°C), aligns with recently observed habitat utilization patterns for wild mahi and could be relevant for climate change predictions.

Vegetation cover and occurrence of salamanders in the western Mediterranean.

The Mediterranean region possesses a rich diversity of salamanders, which also exhibit a high degree of ecological diversification. It is assumed that the presence of salamanders is dependent on the level of vegetation cover in terrestrial habitats, but the strength of this association is likely to vary among species. In this study, we investigated the patterns of habitat utilization for Mediterranean salamanders based on 589 records of 33 species. We tested the hypothesis that the association between salamander presence and vegetation density varies among genera or reproductive modes (i.e. terrestrial vs aquatic). The results show that vegetation cover has similar influences on terrestrial and aquatic groups but important differences are identified for lotic and lentic aquatic species. Our findings also indicate that the aquatic lotic, terrestrial, and small-body species deviate significantly from that expected from the background range of variation.

Use of habitats by aquatic and terrestrial avifauna in tropical coastal lagoons

Tropical coastal lagoons comprise several habitats, which have great importance for avifauna by providing nesting, roosting or foraging sites. However, various anthropogenic activities have caused coastal habitat degradation globally. To sustain conservation, it is crucial to understand the seasonal habitat utilization patterns of avifauna. Additionally, how coastal habitats are influencing terrestrial avifaunal distribution is not well documented. Therefore, this study was carried out to examine the habitat utilization patterns by aquatic and terrestrial avifauna in Batticaloa Lagoon in eastern Sri Lanka from September 2017–August 2018. Compared with past studies, our study indicated a lower diversity of aquatic birds. Findings revealed that 47% and 27% of aquatic and terrestrial avifaunal species, respectively occurred in all habitats indicating their utilization of different habitats as alternative habitats. However, terrestrial bird composition was more similar between the different habitats (compared with aquatic birds) as per non-metric multi-dimensional scaling (NMDS) plots. Overall bird density variation was significant with season and habitat. Considering the avifaunal density, both aquatic and terrestrial birds mostly preferred swamp habitat. Abandoned shrimp farms were least preferred by aquatic birds and terrestrial birds indicating that anthropogenic habitats do not provide many of the required resources that are provided by natural habitats. Mangroves (comprising true mangrove species and mangrove associates) support a relatively high diversity of terrestrial birds, but recorded the lowest diversity of aquatic birds. Suggestions were made to improve habitats to attract more species especially aquatic birds.

Effects of human activity on the habitat utilization of Himalayan marmot (Marmota himalayana) in Zoige wetland.

Human activity is increasingly and persistently disturbing nature and wild animals. Affected wildlife adopts multiple strategies to deal with different human influences. To explore the effect of human activity on habitat utilization of Himalayan marmot (Marmota himalayana), habitat utilization patterns of three neighboring marmot populations in habitats affected differently by human activities were recorded and compared. We found that (a) distance between reproductive burrows (a represent of reproductive pairs) becomes shorter under the influence of human activities, and more burrows were dug as temporary shelters, resulting in shorter distance between those shelters and shorter distance flee to those shelters and, consequently, shorter flight initiation distance when threatened. More burrows that are closer to the disturbed habitats improve the ability to escape from threats. (b) Reproductive burrow site selection of the species is determined by the availability of mounds in the habitat, and breeding pairs selectively build reproductive (also the hibernation) burrows on mounds, potentially to improve surveillance when basking and the drainage of burrows. Human activities generally drive breeding pairs away from the road to dig their reproductive burrows likely to reduce disturbance from vehicles. However, even heavy human activity exerts no pressure on the distance of reproductive burrows from the road or the mound volume of the high disturbance population, potentially because mounds are the best burrowing site to reproduce and hibernate in the habitat. Marmots deal with disturbance by digging more burrows in the habitat to flee more effectively and building reproductive burrows on mounds to gain better vigilance and drainage efficiency.

Crop damage by Asian elephant (Elephas maximus) in Ekgaloya and Dewalahinda areas in Ampara District, Eastern province, Sri Lanka

Crop damage by Asian elephant (Elephas maximus) in Ekgaloya and Dewalahinda areas in Ampara District, Eastern province, Sri Lanka

Evolution in Sinocyclocheilus cavefish is marked by rate shifts, reversals, and origin of novel traits

BackgroundNatural model systems are indispensable for exploring adaptations in response to environmental pressures. Sinocyclocheilus of China, the most diverse cavefish clade in the world (75 species), provide unique opportunities to understand recurrent evolution of stereotypic traits (such as eye loss and sensory expansion) in the context of a deep and diverse phylogenetic group. However, they remain poorly understood in terms of their morphological evolution. Therefore, we explore key patterns of morphological evolution, habitat utilization and geographic distribution in these fishes.ResultsWe constructed phylogenies and categorized 49 species based on eye-related condition (Blind, Micro-eyed, and Normal-eyed), habitat types (Troglobitic—cave-restricted; Troglophilic—cave-associated; Surface—outside caves) and existence of horns. Geometric-morphometric analyses show Normal-eyed morphs with fusiform shapes segregating from Blind/Micro-eyed deeper bodied morphs along the first principal-component axis; second axis accounts for shape complexity related to horns. The body shapes showed a significant association with eye-related condition and horn, but not habitat types. Ancestral reconstructions suggest at least three independent origins of Blind morphs, each with different levels of modification in relation to their ancestral Normal-eyed morphs; Sinocyclocheilus are also pre-adapted for cave dwelling. Our geophylogeny shows an east-to-west diversification spanning Pliocene and Pleistocene, with early-diversifying Troglobitic species dominating subterranean habitats of karstic plains whereas predominantly Surface forms inhabit hills to the west. Evolutionary rates analyses suggest that lineages leading to Blind morphs were characterized by significant rate shifts, such as a slowdown in body size evolution and a 5–20 fold increase in rate of eye regression, possibly explained by limited resource availability. Body size and eye size have undergone reversals, but not horns, a trait entailing considerable time to form.ConclusionsSinocyclocheilus occupied cave habitats in response to drying associated with aridification of China during late Miocene and the Pliocene. The prominent cave-adaptations (eye-regression, horn-evolution) occur in clades associated with the extensive subterranean cave system in Guangxi and Guizhou provinces. Integration of morphology, phylogeny, rate analyses, molecular-dating and distribution show not only several remarkable patterns of evolution, but also interesting exceptions to these patterns signifying the diversification of Sinocyclocheilus as an invaluable model system to explore evolutionary novelty.

Integration of DNA extraction, metabarcoding and an informatics pipeline to underpin a national citizen science honey monitoring scheme

Worldwide honeybees (Apis mellifera L.) are one of the most widely kept domesticated animals, supporting domestic and commercial livelihoods through the production of honey and wax, as well as in the delivery of pollination services to crops. Quantifying which plant species are foraged upon by honeybees provides insights into their nutritional status as well as patterns of landscape scale habitat utilization. Here we outline a rapid and reproducible methodology for identifying environmental DNA (eDNA) originating principally from pollen grains suspended within honey. The process is based on a DNA extraction incorporating vacuum filtration prior to universal eukaryotic internal transcribed spacer 2 region (ITS2) amplicon generation, sequencing and identification. To provide a pre-cursor to sequence phylotyping, we outline systems for error-corrected processing amplicon sequence variant abundance tables that removes chimeras. This methodology underpins the new UK National Honey Monitoring Scheme.•We compare the efficacy and speed of centrifugation and filtration systems for removing pollen from honey samples as a precursor to plant DNA barcoding.•We introduce the ‘HONEYPI’ informatics pipeline, an open access resource implemented in python 2.7, to ensure long-term reproducibility during the process of amplicon sequence variant classification.

A dynamic approach to estimate the probability of exposure of marine predators to oil exploration seismic surveys over continental shelf waters

The ever-increasing human demand for fossil fuels has resulted in the expansion of oil exploration efforts to waters over the continental shelf. These waters are largely utilized by a complex biological community. Large baleen whales, in particular, utilize continental shelf waters as breeding and calving grounds, foraging grounds, and also as migration corridors. We developed a dynamic approach to estimate the likelihood that individuals from different populations of blue whales Balaenoptera musculus and humpback whales Megaptera novaeangliae could be exposed to idealized, simulated seismic surveys as they move over the continental shelf. Animal tracking data for the different populations were filtered, and behaviors (transit and foraging) were inferred from the tracks using hidden Markov models. We simulated a range of conditions of exposure by having the source of noise affecting a circular area of different radii (5, 25, 50 and 100 km), moving along a gridded transect of 270 and 2500 km2 at a constant speed of 9 km h-1, and starting the simulated surveys every week of the year. Our approach allowed us to identify the temporal variability in the susceptibility of the different populations under study, as we ran the simulations for an entire year, allowing us to identify periods when the surveys would have an intensified effect on whales. Our results highlight the importance of understanding the behavior and ecology of individuals in a site-specific context when considering the likelihood of exposure to anthropogenic disturbances, as the habitat utilization patterns of each population are highly variable.