Habitat Choice Experiments Research Articles

Effects of the invasive fish Poecilia reticulata on the behavioral response of Daphnia pulex to the exotic submerged macrophyte Egeria densa

AbstractThe high-elevation plateaus of the inter-Andean valleys are home to shallow lakes that have become eutrophic. These lakes share similarities with shallow lakes in temperate and subtropical areas. Because native species diversity is low, invasive species dominate the fish and macrophytes communities. The study aimed to investigate the behavioral response of the local Daphnia pulex from the Andean shallow Lake Yahuarcocha to the exotic submerged macrophyte Egeria densa and the exotic fish Poecilia reticulata. Laboratory habitat choice experiments revealed that D. pulex from Lake Yahuarcocha strongly avoid E. densa, irrespective of the presence of the fish P. reticulata or chemical cues indicating fish predation on D. pulex. This observation could be explained by the fact that P. reticulata displayed a strong attraction to E. densa during the daytime, probably to avoid bird predation. D. pulex from the nearby Lake San Pablo where P. reticulata is absent but where the fish community is dominated by Oncorhynchus mykiss displayed the same avoidance behavior to submerged macrophytes as D. pulex from Lake Yahuarcocha. These results indicate that macrophytes in these high-elevation shallow lakes may not facilitate top-down control of phytoplankton, since plants do not offer refuge to D. pulex from fish predation.

Melanic pigmentation and light preference within and between two Drosophila species.

Environmental adaptation and species divergence often involve suites of co‐evolving traits. Pigmentation in insects presents a variable, adaptive, and well‐characterized class of phenotypes for which correlations with multiple other traits have been demonstrated. In Drosophila, the pigmentation genes ebony and tan have pleiotropic effects on flies' response to light, creating the potential for correlated evolution of pigmentation and vision. Here, we investigate differences in light preference within and between two sister species, Drosophila americana and D. novamexicana, which differ in pigmentation in part because of evolution at ebony and tan and occupy environments that differ in many variables including solar radiation. We hypothesized that lighter pigmentation would be correlated with a greater preference for environmental light and tested this hypothesis using a habitat choice experiment. In a first set of experiments, using males of D. novamexicana line N14 and D. americana line A00, the light‐bodied D. novamexicana was found slightly but significantly more often than D. americana in the light habitat. A second experiment, which included additional lines and females as well as males, failed to find any significant difference between D. novamexicana‐N14 and D. americana‐A00. Additionally, the other dark line of D. americana (A04) was found in the light habitat more often than the light‐bodied D. novamexicana‐N14, in contrast to our predictions. However, the lightest line of D. americana, A01, was found substantially and significantly more often in the light habitat than the two darker lines of D. americana, thus providing partial support for our hypothesis. Finally, across all four lines, females were found more often in the light habitat than their more darkly pigmented male counterparts. Additional replication is needed to corroborate these findings and evaluate conflicting results, with the consistent effect of sex within and between species providing an especially intriguing avenue for further research.

Effects of increased temperature on arctic slimy sculpin Cottus cognatus is mediated by food availability: Implications for climate change

Abstract Lakes are vulnerable to climate change, and warming rates in the Arctic are faster than anywhere on Earth. Fishes are sensitive to changing temperatures, which directly control physiological processes. Food availability should partly dictate responses to climate change because energetic demands change with temperature, but few studies have simultaneously examined temperature and food availability. We used a fully factorial experiment to test effects of food availability and temperature (7.6, 12.7, and 17.4°C; 50 days) on growth, consumption, respiration, and excretion, and effects of temperature (12 and 19.3°C; 27 days) on habitat use and growth of a common, but understudied, mid‐level consumer, slimy sculpin Cottus cognatus, in arctic lakes. We also used bioenergetics modelling to predict consumptive demand under future warming scenarios. Growth rates were 3.4× higher at 12.7°C in high food compared to low food treatments, but the magnitude of differences depended on temperature. Within low food treatments, there was no statistical difference in growth rates among temperatures, suggesting food limitation. Consumption, respiration, and nitrogen excretion increased with temperature independent of food availability. Lower growth rates coincided with lower phosphorus excretion at the highest temperature, suggesting that fish selectively retained phosphorus at high temperatures and low food. In habitat choice experiments, fish were more likely to use the 12°C side of the tank, closely matching their optimal temperature. We predicted a 9% increase in consumption is required to maintain observed growth under a 4°C warming scenario. These results highlight considering changes in food resources and other associated indirect effects (e.g. excretion) that accompany changing temperatures with climate change. Depending on how food webs respond to warming, fish may cope with predicted warming if density‐dependent feedback maintains population sizes.

Antlions in interaction: confrontation of two competitors in limited space

Abstract The study focused on the behaviour of sit-and-wait antlion larvae in interspecific interactions. Antlion larvae usually occur in clusters with a high density of individuals; therefore, competition can be intense. We observed two abundant antlion species, E. nostras and M. formicarius, which co-occur in some habitats. In a simple habitat choice experiment where substrates differed according to sand particle size, we found that E. nostras exhibited dominance over M. formicarius. Most E. nostras larvae remained in the more suitable substrate and constructed pits, while all the M. formicarius larvae moved out of the suitable area, and did not build pits. In the second experiment, we observed the characteristics of the pit-fall traps and scored the occurrence of larval relocation in relation to interactions and in the control group, where larvae were kept in containers separately. In interactions, the larvae of E. nostras constructed smaller pits, but pit enlargement was greater in comparison to the control group. M. formicarius larvae constructed similar sized pits in both groups; however, enlargement was greater in the control group. Relocation of larvae occurred only during interactions. In direct interactions, we found 15 behavioural patterns, which are described in detail for the first time. In the presence of a competitor, larvae showed intense territorial behaviour. We recorded several behavioural patterns during larval confrontation, and interestingly, intraguild predation rarely occurred. In most cases, E. nostras larvae outcompete M. formicarius, which was evident from the larger pits and the rate of pit-construction.

“Adapted” Habitat Evaluation Procedure and Choice Experiment: Substitutes or Complements?

In this paper, we assess the environmental benefits derived from a wetland restoration plan. We assume that some of these benefits are “familiar” and thus fully perceived by the population; whereas those with more complex origins are “unfamiliar” and thus poorly perceived and valued. Well perceived benefits can often be assessed from carefully constructed conventional economic approaches based on preferences. However, the biases of these approaches become too significant for poorly perceived benefits which require alternative valuation methods. The “adapted” Habitat Evaluation Procedure (HEPa) “benefit” seeks to value environmental benefits through a non-monetary metric, the habitat unit. It evaluates marginal environmental changes using ecological indicators instead of preferences. Our aim is to test the possibility of combining a conventional monetary valuation method (choice experiment) with a non-monetary alternative valuation method (HEPa) to see whether such a combination could improve the assessment of benefits stemming from positive impacts of environmental policies. By so doing, we seek to contribute to a better integration of ecosystem services into the processes of planning, management, and decision-making regarding natural areas.

Behavioural maintenance of highly localised jellyfish (Copula sivickisi, class Cubozoa) populations

The medusae of cubozoan jellyfishes have sophisticated behaviours and are strong swimmers. Therefore, they have the potential to influence their distribution and connectivity among populations. We used ecological and behavioural data in combination with local oceanography to estimate the potential of medusae in the cubozoan Copula sivickisi to disperse from local populations at scales of hundreds of meters to kilometres. The distribution of C. sivickisi was mapped on a fringing reef at Magnetic Island, Queensland, Australia, with underwater jellyfish camera units (JCams). The availability of reef habitat, dominated by Sargassum sp. algae and coral, had a significant effect on the abundance of medusae. Medusae were 11–7 times more abundant at shallow (≤ 4.1 m) and mid-depth (4.2–7 m) sites with high to moderate habitat availability, compared to deep sites (≥ 7.1 m) where habitat availability was low. Further, medusae were absent at sites far from suitable habitat, both alongshore and in deeper waters. Medusae displayed preferential habitat selection. They were found low in the water column near reefs in depth stratified plankton tows and they preferentially attached to Sargassum in a habitat choice experiment. The swimming speeds of C. sivickisi medusae were determined experimentally and were equivalent to or faster than most of the current speeds measured where the populations occured. The results suggested that medusae can attach to habitat and swim against currents to maintain positions on reefs, thereby restricting dispersal. Incipient speciation is highly likely within the species’ cosmopolitan distribution.

A nonnative habitat-former mitigates native habitat loss for endemic reef fishes.

Animals that select the best available habitats are most likely to succeed in degraded environments, but ecological change can create evolutionarily unfamiliar habitats that may be under- or over-utilized by native fauna. In temperate coastal waters, eutrophication and grazing have driven a global decline in native seaweeds and facilitated the establishment of nonnative seaweeds that provide novel macrophyte habitat. We tested whether a nonnative kelp canopy (wakame Undaria pinnatifida) functions as a viable habitat or ecological trap for several endemic reef fishes on urchin-grazed reefs in southern Australia. We assessed the willingness of fish to utilize native vs. wakame kelp canopy via a laboratory habitat choice experiment and by recording natural recruitment to specially constructed boulder reefs with manipulated kelp canopy. We also compared fish communities on natural reefs using a before-after-control-impact survey of wakame patches, and to assess the quality of wakame habitat for resident fish, compared fitness metrics for fish collected from habitats with native vs. wakame kelp canopy. Endemic fishes did not distinguish between the native or wakame canopy but preferred both to barren reef habitats. On urchin-grazed natural reefs, fish occurred in higher abundance and diversity where seasonal wakame canopy was present. Fitness metrics in fish collected from wakame patches were comparable to those in fish from adjacent native kelp patches. These findings indicate that the nonnative canopy provides a viable habitat for endemic fish and may play a role in sustaining native fauna populations in this degraded ecosystem. More broadly, we recommend that managers consider the role of nonnative habitats within the context of environmental change, as endemic fauna may benefit from nonnative habitat-formers in areas where their native counterparts cannot persist.

Contrasting patterns in habitat selection and recruitment of temperate reef fishes among natural and artificial reefs

Artificial reefs, a common management tool for stock enhancement of recreational fisheries and marine habitat restoration, have been deployed all over the world. However, little is known about the attractiveness of artificial compared to natural reefs to reef fishes. Here we investigated the habitat preferences of three reef fish species: Trachinops caudimaculatus, Vincentia conspersa and Trinorfoklia clarkei through the observation of recruitment patterns to three study habitats: Reef Ball reefs, custom-designed artificial reefs, and natural reefs in Port Phillip Bay, Victoria, Australia. Additionally, we examined habitat preferences of new recruits of T. caudimaculatus and V. conspersa using laboratory-based habitat choice experiments. In general, T. caudimaculatus recruitment was at least twice as high on natural reefs compared to both artificial reefs, whereas V. conspersa recruitment was almost three times greater on Reef Ball reefs compared to the other two habitats. T. clarkei recruited in equal numbers across all habitats. However, in the laboratory experiments T. caudimaculatus recruits selected the Reef Ball reef almost three times as often as the other two habitats, while V. conspersa exhibited no habitat preference. Little is known about the growth, condition, survival or reproduction of individuals that occupy artificial reefs. In areas where habitat is not limiting, the higher preference or equal attractiveness of some artificial habitats may negatively influence fish populations, if larvae are redirected to poorer quality artificial reef habitat, that lead to lower fitness advantages.

Temperature influences habitat preference of coral reef fishes: Will generalists become more specialised in a warming ocean?

Climate change is expected to pose a significant risk to species that exhibit strong behavioural preferences for specific habitat types, with generalist species assumed to be less vulnerable. In this study, we conducted habitat choice experiments to determine how water temperature influences habitat preference for three common species of coral reef damselfish (Pomacentridae) that differ in their levels of habitat specialisation. The lemon damselfish Pomacentrus moluccensis, a habitat specialist, consistently selected complex coral habitat across all temperature treatments (selected based on local average seasonal temperatures naturally experienced insitu: ambient winter 22°C; ambient summer 28°C; and elevated 31°C). Unexpectedly, the neon damselfish Pomacentrus coelestis and scissortail sergeant Abudefduf sexfasciatus, both of which have more generalist habitat associations, developed strong habitat preferences (for complex coral and boulder habitat, respectively) at the elevated temperature treatment (31°C) compared to no single preferred habitat at 22°C or 28°C. The observed shifts in habitat preference with temperature suggest that we may be currently underestimating the vulnerability of some habitat generalists to climate change and highlight that the ongoing loss of complex live coral through coral bleaching could further exacerbate resource overlap and species competition in ways not currently considered in climate change models.

Cigarette butts may have low toxicity to soil-dwelling invertebrates: Evidence from a land snail

Cigarette butts are a common form of litter that is often deposited on soil, where toxins from butts may affect soil-dwelling organisms. We examined possible toxicity of cigarette butts to the woodland snail Anguispira alternata using a toxicity study with cigarette butt effluent and a lab-based habitat choice experiment in which snails could feed or rest on areas with different butt densities. No mortality occurred during the 32-day toxicity study, which used six effluent concentrations ranging from 0 to 4butts/l (0 to 0.92butts/kg of soil). Neither food consumption nor snail growth differed among the effluent concentrations. When provided a choice among four habitats with 0 to 4 cigarette butts, snails selected to preferentially rest in the 0-butt habitat and avoided the 4-butt habitat. This distribution pattern was strong during the first wk. but became weaker over time and largely disappeared by the end of the 3-wk experiment. Snails did not discriminate among butt densities when feeding. This is the first toxicity test using cigarette butts on soil-dwelling invertebrates. Declining aversion to cigarette butts over a 3-wk period may indicate declining toxicity of terrestrially deposited butts as they age, but further testing is needed.

An endangered seahorse selectively chooses an artificial structure

The development of a residential marina estate within the Knysna estuary, South Africa, introduced Reno mattresses (horizontal wire cages filled with rocks) as a novel habitat for the endangered Knysna seahorse Hippocampus capensis. Consistently high seahorse densities on these artificial structures, despite the availability of seagrass habitat, begged the question of whether this habitat was chosen by the seahorse in preference to natural vegetation. An in situ habitat choice experiment was conducted which focused on the choice made by adult H. capensis between natural vegetation (Zostera capensis) and artificial (Reno mattress) habitat within a choice chamber. Seahorses were significantly more likely to move away from Z. capensis onto a Reno mattress structure or remain on this structure. This study concludes that higher H. capensis densities on Reno mattresses within Thesen Islands Marina are owing to some positive feature of this habitat and the underlying processes responsible for the choice made by this species (additional food, holdfasts, protection) can now be investigated.

Benthic composition influences habitat use and toxicity of coral-dwelling fishes

The distribution and abundance of habitat specialists is often associated with the availability of preferred habitat; however, other environmental features can also influence habitat selection. Coral-dwelling gobies are habitat specialist fishes that depend on the availability of a few key species of coral for their survival and rely on skin toxins to reduce predation risk. This study investigated the influence of benthic substratum around coral colonies on patterns of habitat use and toxicity of two species of coral-dwelling gobies (Gobiodon erythrospilus and Gobiodon histrio) that compete for access to the coral, Acropora nasuta. Field surveys demonstrated that the benthic substratum around A. nasuta coral colonies differed between colonies occupied by G. histrio and G. erythrospilus. Juvenile, single adult and breeding pairs of G. erythrospilus mostly inhabited A. nasuta colonies surrounded by branching corals. In contrast, juvenile and single adult G. histrio associated with A. nasuta coral colonies that had adjacent epilithic algal matrix and G. histrio breeding pairs inhabited colonies surrounded by sand/rubble. Habitat choice experiments demonstrated that both goby species prefer A. nasuta coral colonies with benthic substratum mainly composed by epilithic algal matrix and sand; suggesting that competition for coral colonies in preferred locations could influence patterns of habitat use observed in the field. The substratum around preferred coral colonies also influenced the toxicity levels of associated fishes. Gobies inhabiting A. nasuta coral colonies surrounded by epilithic algal matrix and sand showed higher levels of toxicity than gobies collected from colonies surrounded by branching corals. Given the potential for toxicity level to reduce the risk of predation, this could explain why gobies would compete for access to colonies of the preferred coral species surrounded by epilithic algal matrix and sand. These results show that the habitat use of coral habitat specialist fishes can be affected by the benthic composition around preferred coral colonies and demonstrate how competition for important secondary resources can influence patterns of habitat use.

Interspecific differences in habitat selection of syngnathids in the Ria Formosa lagoon, Portugal

Interspecific patterns of local population abundances and differences in habitat preference of two seagrass resident pipefish species of the genus Syngnathus were investigated in a semi-protected lagoon system in Southern Portugal. The results of the combination of field surveys across different seagrass meadows and laboratory habitat choice experiments between May and September 2014 demonstrate that the pipefish population structure in a single-species meadow composed of Zostera noltei differed significantly from the ones in a single-species meadow of Cymodocea nodosa and a mixed meadow of both seagrasses. In addition, the two most abundant pipefish species, Syngnathus typhle and Syngnathus abaster, showed interspecific and intersexual differences in habitat selection both on a macro- and a microhabitat scale in laboratory experiments. The study suggests that in addition to the investigated structural characteristics of sea grasses (i.e. shoot length and density), other factors such as flow velocity may influence habitat selection of syngnathids.

Littoral zooplankton–water hyacinth interactions: habitat or refuge?

Water hyacinth (Eichhornia crassipes) is one of the most problematic invasive macrophyte in the world. Although it has become a key element of the systems where it was introduced several decades ago, there is insufficient information to determine its role on biological interactions. To elucidate water hyacinth–littoral zooplankton–planktivorous fish interactions, we conducted habitat choice experiments in the absence and presence of fish chemical cues (kairomones) for two tropical littoral cladocerans, Chydorus brevilabris and Simocephalus vetulus. We classified habitat selection as a habitat (preference for the plant without predation risk) and/or as a refuge (preference for the plant with predation risk). Our results showed that E. crassipes is used as a habitat by C. brevilabris and as a refuge by S. vetulus against fish predation. Although C. brevilabris did not use the water hyacinth as a refuge in the presence of kairomones, the results suggested that both C. brevilabris and S. vetulus exhibited behavioral responses that further reduced their predation risk. To our knowledge, this study is the first experimental evidence for littoral cladocerans using free-floating macrophytes as a refuge against fish predation in tropical systems. Our results support the assertion that habitat association is not necessarily an evidence of habitat preference.

Food web positioning of a recent coloniser: the North American Harris mud crab Rhithropanopeus harrisii (Gould, 1841) in the northern Baltic Sea

Identifying resource use and functional traits of non-indigenous species are promising means to increase the ability to predict ecological consequences of invasions. One of the most widely spread brachyuran crab species, and a recent invader in the northern Baltic Sea, is the North American Harris mud crab, Rhithropanopeus harrisii (Gould, 1841). Although spread, establishment, and population structure have been studied for this species, little is known about its role and impact in a new environment. We investigated the position and role of R. harrisii i n the coastal food web by combining spatial and temporal estimates of trophic position using stable isotopes (δ 13 C and δ 15 N), with short-term food- and habitat-choice experiments. We observed a stable pattern in the trophic position between two environmentally different locations in the Archipelago Sea over the production season. The identification of a natural breakpoint in carbon stable isotopes at the size of 12 mm carapace width suggested a presence of an ontogenetic diet shift, which was confirmed by isotope signatures positioning large R. harrisii among secondary consumers and small individuals with primary consumers. The generalist consumer nature of R. harrisii and preference for structured habitat was supported by an active habitat and food choice, revealing no preference for prey species (polychaetes versus amphipod), but selection of brown algae over bare mud. To broaden the understanding of the functional role of R. harrisii, we combined our findings with other known biological and ecological traits of the species and qualitatively compared these to characteristics of other benthic organisms in the northern Baltic Sea, suggesting a general similarity in traits.

The distribution of the European shore crab, Carcinus maenas, with respect to mangrove forests in southeastern Australia

There is growing interest in associations between non-native species and native foundation species. Along the southeast coast of Australia, the European shore crab, Carcinus maenas, overlaps with the distribution of the grey mangrove, that provides refuge to many native invertebrates from predators and physiological stress. We tested the hypothesis that C. maenas would be more abundant under the canopy of mangrove forests than in adjacent unvegetated intertidal habitat. Trapping surveys within three estuaries found greater abundances of C. maenas in mangrove forests than in adjacent unvegetated habitat and, within mangrove forests, under the canopy than in the pneumatophores zone. Average temperatures under the mangrove canopy were up to 2°C lower than in unshaded habitats and maximum temperatures up to 5.7°C less. The results of tethering studies did not support the hypothesis that predatory mortality of C. maenas was reduced in mangroves. To the contrary, survivorship of tethered crabs was much lower under the mangrove canopy than in adjacent unvegetated habitat. Habitat choice experiments, however, indicated that crabs chose shaded and protected over unshaded and exposed habitat. Hence, along this coastline where summertime maximum air temperatures may approach the known LD50 of C. maenas (40min at 40°C), mangroves may help to facilitate persistence in intertidal habitats. Our study adds to a growing number indicating that foundation species may not only facilitate native species, but non-native species too. Additional studies are now needed to confirm the mechanism of the association between C. maenas and mangroves in eastern Australia.

The effects of coral bleaching on settlement preferences and growth of juvenile butterflyfishes

Coral bleaching and associated mortality is an increasingly prominent threat to coral reef ecosystems. Although the effects of bleaching-induced coral mortality on reef fishes have been well demonstrated, corals can remain bleached for several weeks prior to recovery or death and little is known about how bleaching affects resident fishes during this time period. This study compared growth rates of two species of juvenile butterflyfishes (Chaetodon aureofasciatus and Chaetodon lunulatus) that were restricted to feeding upon either bleached or healthy coral tissue of Acropora spathulata or Pocillopora damicornis. Coral condition (bleached vs. unbleached) had no significant effects on changes in total length or weight over a 23-day period. Likewise, in a habitat choice experiment, juvenile butterflyfishes did not discriminate between healthy and bleached corals, but actively avoided using recently dead colonies. These results indicate that juvenile coral-feeding fishes are relatively robust to short term effects of bleaching events, provided that the corals do recover.

Microhabitat association in white-streaked grouper Epinephelus ongus: importance of Acropora spp.

Microhabitat associations are considered to be important for juvenile survivorship and growth of coral reef fishes. The aim of the study was to quantify microhabitat associations between juvenile and adult white-streaked grouper Epinephelus ongus, which supports important fisheries in coral reef areas. Underwater observations revealed that most juveniles were found in bottlebrush Acropora spp., staghorn Acropora spp. and coral rubble and there was a significant positive use of bottlebrush Acropora spp. and a significant negative use of coral rubble. For adults, most individuals were found in bottlebrush Acropora spp. and staghorn Acropora spp., and there was a significant positive use of staghorn Acropora spp. and significant negative use of coral rubble. A habitat choice experiment by using pre-settlement individuals revealed that both bottlebrush Acropora spp. and staghorn Acropora spp. were used as settlement sites, whereas coral rubble was rarely used as a settlement site. Results of the study suggest that juvenile and adult E. ongus showed significantly positive microhabitat associations with bottlebrush Acropora spp. and staghorn Acropora spp., respectively, in the field. Bottlebrush Acropora spp. has smaller inter-branch spaces than staghorn Acropora spp., which could drive patterns of microhabitat associations. In addition, post-settlement processes such as predation may influence the spatial distribution of juveniles. Because Acropora corals are very susceptible to coral bleaching, we predict that rising temperatures from climate change will negatively impact populations of E. ongus.

Ecology and Behaviour of Burton’s Legless Lizard (Lialis burtonis, Pygopodidae) in Tropical Australia

The elongate, functionally limbless flap-footed lizards (family Pygopodidae) are found throughout Australia, ranging into southern New Guinea. Despite their diversity and abundance in most Australian ecosystems, pygopodids have attracted little scientific study. An intensive ecological study of one pygopodid, Burton's legless lizard (Lialis burtonis Gray 1835), was conducted in Australia's tropical Northern Territory. L. burtonis eats nothing but other lizards, primarily skinks, and appears to feed relatively infrequently (only 20.8% of stomachs contained prey). Ovulation and mating occur chiefly in the late dry-season (beginning around September), and most egg-laying takes place in the early to middle wet-season (November-January). Females can lay multiple clutches per year, some of which may be fertilised with stored sperm. Free-ranging L. burtonis are sedentary ambush foragers, with radio-tracked lizards moving on average < 5 m/day. Most foraging is done diurnally, but lizards may be active at any time of day or night. Radiotracked lizards were usually found in leaf-litter microhabitats, a preference that was also evident in habitat-choice experiments using field enclosures. Lizards typically buried themselves in 6-8 cm of litter; at this depth, they detect potential prey items while staying hidden from predators and prey and avoiding lethally high temperatures.

Habitat choice and recruitment of tropical fishes on temperate coasts of Japan

Tropical reef corals are expanding on Japanese temperate coasts in response to rising sea surface temperatures, and many tropical fish juveniles have been observed routinely in these coral habitats. The present study explored how offshore tropical fish larvae locate coral habitat on the temperate coasts of Japan. Settlement-stage larvae were sampled between July and October 2009–2011 with light traps anchored on coral-replete and coral-free habitats (rocky habitats) at two-level distance (distance between each habitat type was 6 km and 500 m, respectively). Larval abundance was significantly higher on the coral-dominated habitat than that on the rocky habitat at both short and long distance sites, suggesting that coral habitats attract offshore tropical fish larvae. In underwater visual survey, Chaetodontidae and Pomacentridae juveniles were more abundant in coral habitats than in rocky habitats at both the sites, and a laboratory habitat choice experiment demonstrated that these larvae showed a preference for corals rather than rocks. In contrast, densities of juvenile Mullidae did not differ between the coral and rocky habitats, and the larvae did not show a substrate preference in the habitat choice experiment. These observations suggest that habitat choice at settlement possibly accounts for the differences in settlement patterns of tropical fishes between the two habitats. Taken together, our results showed that most tropical fish larvae colonize their settlement coast at a scale of ~0.5 km, and that they may locate coral habitats after reaching a reef. Moreover, the results suggest that coral habitat expansion on temperate coasts will lead to an increase in coral-associated tropical fishes and will change assemblage structures of fishes on temperate coasts.