Growth Chamber Experiments Research Articles

Correlation of yield with early seedling performance and physio-biochemical traits in Basmati rice mutants subjected to heat stress

The present study aims at deciphering the response of Basmati rice mutants to high temperature stress. The work aims to find an early screening method by correlating seedling and physiological response to yields. After rigorous screening in controlled environment (growth chamber) and field conditions over a period of four years 16 mutants’ lines were selected: HTT-18, HTT-29, HTT-31, HTT-39, HTT-51, HTT-53, HTT-74, HTT-81, HTT-92, HTT-97, HTT-98, HTT-104, HTT-114, HTT-119, HTT-132 and HTT-138. These have been tested against standards: Super Basmati and IR-64. Field trials were conducted at three locations while early seedling-stage traits and their biochemical analyses were studied in growth chamber experiments. Data of seedling traits were used to establish correlations with paddy yield under hot field conditions. The temperatures were high at two sites: Multan and Bahawalpur ranging 24-46 °C and 25-45 °C respectively), and relatively lower at NIAB field station (26-45 °C. The paddy yield was significantly correlated with early seedling-stage traits such as shoot length (0.79**), shoot fresh and dry weight (0.48* and 0.49*), and cell membrane thermo-stability (0.60**). Additionally, significant higher activities of antioxidants (SOD and APX) and lower stress indicators (MDA, esterase and TOS) were observed in the heat tolerant mutants. These mutants were classified for their heat tolerance by principle component analysis (PCA) using yield-correlated early seedling-stage and other physio-biochemical parameters. As a result, the heat tolerance classification of mutants based on PCA coincided with the yield of mutants grown under hot field conditions. The present study suggests that these seedling parameters may be used as surrogates for field performance and used in the selection of thermo-tolerant Basmati rice

Effect of Early and Conventional Sowings on Soybean Establishment Quality, Nodulation, and Early Biomass Development Under Inoculation with Rhizoctonia solani

Early sowing has potential to reduce negative impacts of summer drought on soybean productivity in southern Europe. However, performing early sowing into cool and moist soil conditions may increase risks of soilborne pathogens that cause damping-off disease. We investigated whether and to what extent soybean germination, emergence, nodulation, and early biomass growth was affected when inoculated with Rhizoctonia solani, an important causal agent of damping-off disease. We conducted this study through four complementary approaches: (i) in vitro laboratory tests, (ii) field experiments including two sowing dates (early and conventional), (iii) growth-chamber experiments, and (iv) modeling. The pathogen caused disease symptoms and significantly reduced (P ≤ 0.001) radicle growth in vitro but failed to cause disease under field or growth-chamber conditions. No biological suppressiveness of the field soil to R. solani was found when tested in the growth chamber. Final field emergence rates ranged from 72 to 92% for early and conventional sowing, respectively, while those in the growth chamber ranged from 80 to 100%. Under field conditions, abiotic stresses were the major causes of nonemergence while biotic stresses had only minor impact on seedling emergence. A significant effect of sowing date (P < 0.001) was observed on the average shoot and root length and on the number of average nodules per plantlet. The overall prediction quality of the SIMPLE model was very good for both sowing dates. The contrasts between laboratory and field experiments in terms of disease development, time to emergence, and early growth parameters are discussed. [Formula: see text] Copyright © 2021 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license .

Acclimation of CH4 emissions from paddy soil to atmospheric CO2 enrichment in a growth chamber experiment

Elevated levels of atmospheric CO2 (eCO2) promote rice growth and increase methane (CH4) emissions from rice paddies, because increased input of plant photosynthate to soil stimulates methanogenic archae. However, temporal trends in the effects of eCO2 on rice growth and CH4 emissions are still unclear. To investigate changes in the effects of eCO2 over time, we conducted a two-season pot experiment in a walk-in growth chamber. Positive effects of eCO2 on rice leaf photosynthetic rate, biomass, and grain yield were similar between growing seasons. However, the effects of eCO2 on CH4 emissions decreased over time. Elevated CO2 increased CH4 emissions by 48%–101% in the first growing season, but only by 28%–30% in the second growing season. We also identified the microbial process underlying the acclimation of CH4 emissions to atmospheric CO2 enrichment: eCO2 stimulated the abundance of methanotrophs more strongly in soils that had been previously exposed to eCO2 than in soils that had not been. These results emphasize the need for long-term eCO2 experiments for accurate predictions of terrestrial feedbacks.

Response of giant foxtail and wild proso millet to artificial light quality alteration

Light is an essential requirement for proper plant growth and development. Growth chamber experiments were conducted to determine whether artificial alteration of light quality (reducing the red to far-red ratio-R:FR) differentially affected the growth and development of giant foxtail and wild proso millet, two troublesome annual grass weeds in the United States. Growth phenotypes of both weeds were examined under two R:FR regimes (0.28-reduced R:FR and 1.12-unaltered R:FR) in the absence of competition (control conditions) and under intraspecific and interspecific competition. The reduced R:FR simulated shaded (below-canopy) R:FR conditions in the field while the unaltered R:FR treatment simulated direct sunlight (above-canopy) conditions. Averaged across weed species, reducing the R:FR increased plant height, but reduced tiller production and above-ground biomass under no plant competition (P<0.05). In the presence of competition, reducing the R:FR increased plant height and internode length but reduced the number of tillers and leaf area across weed species. No phenotypic differences were observed for weeds tested under intraspecific or interspecific competition. Our study has shown that the response of both weeds to artificial R:FR alteration is similar to that observed under shaded field conditions. Therefore, by replacing bordering plants with a crop, controlled experiments can be used to test the effect of crop canopies on weed suppression when selecting cultivars to be planted in areas where certain weed species are prevalent, minimizing weed-related yield losses.

Environmental cues affecting horseweed (Conyza canadensis) growth types and their sensitivity to glyphosate

AbstractHorseweed [Conyza canadensis(L.) Cronquist] is a facultative winter annual weed that can emerge from March to November in Michigan. Fall-emergingC. canadensisoverwinters as a rosette, while spring-emergingC. canadensisskips the rosette stage and immediately grows upright upon emergence. In Michigan, primary emergence recently shifted from fall to spring/summer and therefore from a rosette to an upright growth type. Growth chamber experiments were conducted to determine (1) whether bothC. canadensisgrowth types could originate from a single parent and (2) whether common environmental cues can influence growth type. Variations in temperature, photoperiod, competition, shading, and soil moisture only resulted in the rosette growth type in fourC. canadensispopulations originating from seed collected from a single parent of the upright growth type. However, a vernalization period of 4 wk following water imbibition, but before germination, resulted in the upright growth type. Dose–response experiments were conducted to determine whether glyphosate sensitivity differed betweenC. canadensisgrowth types generated from a single parent of the upright growth type. Upright-typeC. canadensisfrom known glyphosate-resistant populations ISB-18 and MSU-18 were 4- and 3-fold less sensitive to glyphosate than their rosette siblings, respectively. Interestingly, differences in glyphosate sensitivity were not observed between growth types from the susceptible population. These results suggest that whileC. canadensispopulations shift from winter to summer annual life cycles, concurrent increases in glyphosate resistance could occur.

Effects of mosaic biological soil crusts on vascular plant establishment in a coastal saline land of the Yellow River Delta, China

Abstract Aims The effects of biocrusts on vascular plants are rarely evaluated in coastal saline lands. Our aim was to examine whether and how a mosaic of biocrusts affect seed germination of two typical herbaceous plants in a coastal saline land of the Yellow River Delta, to enhance our understanding by which substrate heterogeneity influences plant community dynamics. Methods We conducted growth chamber experiments to investigate the effects of biocrusts and uncrusted soil from bare patch-, Phragmites australis-, Suaeda glauca- and Tamarix chinensis-dominated habitats on seed germination percentage and mean germination time of two herbaceous plants: the perennial P. australis and the annual S. glauca. We also explored the mechanisms underlying the effects of substrate on seed germination. Important Findings Compared with uncrusted soil, biocrusts increased water content, nutrient accumulation and concentration of most salt ions, but they reduced soil pH value. Biocrusts with mosses directly decreased soil pH value and concentration of Mg2+, resulting in an indirect increase in seed germination percentage of S. glaucas. The low soil pH value also resulted in an indirect decrease in seed germination speed of P. australis in their own habitats. Bare patch directly increased accumulation of Cl−, resulting in an indirect decrease in seed germination speed of P. australis. These results suggest that biocrusts with mosses in P. australis habitats offer a window of opportunity for germination of S. glaucas. Biocrusts combined with habitat type have the potential to influence plant community structure through an effect on seed germination and establishment.

Isolation and characterization of streptomycetes and pseudomonad strains with antagonistic activity against the plant parasitic nematode Pratylenchus penetrans and fungi associated with replant disease

Pratylenchus penetrans is one of the most important plant-parasitic nematodes causing losses in economically significant crops such as apple, cherry, corn, grapes, oat, onion, peach, potato, soybean, strawberry, and wheat. The objective of this study was to isolate and characterize plant growth promoting rhizobacterial (PGPR) strains from sweet cherry rhizospheres with biocontrol potential against P. penetrans, and to evaluate the antagonistic activity of the selected strains on a model plant (onion), in a growth chamber experiment. Five strains: three actinomycetes (Streptomyces fulvissimus A12, S. venezuelae A30, and S. annulatus A34) and two pseudomonads (Pseudomonas sp. P3 and P. donghuensis P17) with nematicidal activity were isolated. The selected PGPR strains decreased P. penetrans populations on onion roots and enhanced onion root length and dry weight. Among possible mechanisms of action, the strains displayed the capacity to produce nematicidal lytic enzymes such as chitinases and proteases, and form biofilms, which is an advantage in colonizing the plant rhizosphere. Some of them also showed antifungal activity against the phytopathogenic fungi Fusarium oxysporum C1-1, Ilyonectria macrodidyma C1-1, and Ilyonectria spp. C2-1 isolated from roots of cherry trees affected by replant disease. The multifunctionality of the strains, and the fact that they were isolated from the cherry rhizosphere, makes them good candidates to be used as biocontrol agents in sweet cherry orchards affected by P. penetrans.

Spatial and temporal shifts in photoperiod with climate change.

Climate change causes both temporal (e.g. advancing spring phenology) and geographic (e.g. range expansion poleward) species shifts, which affect the photoperiod experienced at critical developmental stages ('experienced photoperiod'). As photoperiod is a common trigger of seasonal biological responses - affecting woody plant spring phenology in 87% of reviewed studies that manipulated photoperiod - shifts in experienced photoperiod may have important implications for future plant distributions and fitness. However, photoperiod has not been a focus of climate change forecasting to date, especially for early-season ('spring') events, often assumed to be driven by temperature. Synthesizing published studies, we find that impacts on experienced photoperiod from temporal shifts could be orders of magnitude larger than from spatial shifts (1.6h of change for expected temporal vs 1min for latitudinal shifts). Incorporating these effects into forecasts is possible by leveraging existing experimental data; we show that results from growth chamber experiments on woody plants often have data relevant for climate change impacts, and suggest that shifts in experienced photoperiod may increasingly constrain responses to additional warming. Further, combining modeling approaches and empirical work on when, where and how much photoperiod affects phenology could rapidly advance our understanding and predictions of future spatio-temporal shifts from climate change.

Impacts of elevated atmospheric CO2 on arbuscular mycorrhizal fungi and their role in moderating plant allometric partitioning.

Elevated atmospheric CO2 concentration (eCO2) effects on plants depend on several factors including plant photosynthetic physiology (e.g. C3, C4), soil nutrient availability and plants' co-evolved soil-dwelling fungal symbionts, namely arbuscular mycorrhizal (AM) fungi. Complicated interactions among these components will determine the outcomes for plants. Therefore, clearer understanding is needed of how plant growth and nutrient uptake, along with root-colonising AM fungal communities, are simultaneously impacted by eCO2. We conducted a factorial growth chamber experiment with a C3 and a C4 grass species (± AM fungi and ± eCO2). We found that eCO2 increased plant biomass allocation towards the roots, but only in plants without AM fungi, potentially associated with an eCO2-driven increase in plant nutrient requirements. Furthermore, our data suggest a difference in the identities of root-colonising fungal taxa between ambient CO2 and eCO2 treatments, particularly in the C4 grass species, although this was not statistically significant. As AM fungi are ubiquitous partners of grasses, their response to increasing atmospheric CO2 is likely to have important consequences for how grassland ecosystems respond to global change.

Redefining the link between rainfall and crop establishment in dryland cropping systems

ContextThe seasonal break is a rainfall event that has traditionally initiated sowing and enabled plant establishment in Mediterranean-type environments. Despite its importance to crop production, neither the pattern of the seasonal break, nor the impact of recent autumn rainfall decline in eastern Australia on the pattern has been quantified at a national scale. Adaptive strategies to remove reliance on the seasonal break for crop establishment can include combinations of novel genotypes and innovative crop management. ObjectiveThis paper (i) shows how seasonal changes may be altering the pattern of sowing opportunities across southern Australia, and (ii) evaluates the potential for adaptive management to deal with these changes using a case-study in southern Australia involving early, deep-sown wheat cultivars with long coleoptiles to reduce the dependence on the seasonal break for successful crop establishment. MethodsIn the first part of the study, the timing of the seasonal break across the southern Australian cropping regions was determined using the sum of a 7-day rolling mean rainfall to evaporation ratio > 1 to trigger a sowing opportunity between 1 March and 30 July using long-term (1971–2018) gridded (0.05° × 0.05°) historical climate data. The relationship between early-season climatic conditions and adaptive management options was then evaluated using a growth chamber experiment and a field experiment in a Mediterranean-type environment to evaluate the factors leading to successful establishment of earlier deeply sown wheat cultivars with long coleoptiles. Results and conclusionsThe analysis revealed spatial and seasonal variability with the earliest median seasonal break (27-March) in New South Wales (NSW) and Victoria, and the latest (3-June) in Western Australia (WA). The largest shift in seasonal break was a 17-day advance in the Mallee and Sandplain of WA, and an 11-day delay in Central NSW during the period 1990–2018. Evaluation of the factors controlling establishment of a long coleoptile wheat cultivar suggested that soil temperatures in the early sowing windows were unlikely to reduce coleoptile length, but seeding depth, soil type and water availability will play an important role on emergence. SignificanceIn summary, the shifts in the climatic conditions at the break of the growing season have not been the same across the southern cropping region. Adaptations for this climatic shift such as long-coleoptile, deep-sowing strategies for wheat show significant promise but careful consideration of soil factors is required to ensure success and to improve on-farm decision making regarding its use.

Distinct rhizomicrobiota assemblages and plant performance in lettuce grown in soils with different agricultural management histories.

A better understanding of factors shaping the rhizosphere microbiota is important for sustainable crop production. We hypothesized that the effect of agricultural management on the soil microbiota is reflected in the assemblage of the rhizosphere microbiota with implications for plant performance. We designed a growth chamber experiment growing the model plant lettuce under controlled conditions in soils of a long-term field experiment with contrasting histories of tillage (mouldboard plough vs cultivator tillage), fertilization intensity (intensive standard nitrogen (N) + pesticides/growth regulators vs extensive reduced N without fungicides/growth regulators), and last standing field crop (rapeseed vs winter wheat). High-throughput sequencing of bacterial and archaeal 16S rRNA genes and fungal ITS2 regions amplified from total community DNA showed that these factors shaped the soil and rhizosphere microbiota of lettuce, however, to different extents among the microbial domains. Pseudomonas and Olpidium were identified as major indicators for agricultural management in the rhizosphere of lettuce. Long-term extensive fertilization history of soils resulted in higher lettuce growth and increased expression of genes involved in plant stress responses compared to intensive fertilization. Our work adds to the increasing knowledge on how soil microbiota can be manipulated by agricultural management practices which could be harnessed for sustainable crop production.

Nitrogen Use Efficiency in Durum Wheat Under Different Nitrogen and Water Regimes in the Mediterranean Basin.

Improving nitrogen use efficiency (NUE) represents one of the main goals to reduce N input in maximizing crop yield for sustainable agriculture. A NUE key strategy is the exploitation of genetic variation in available germplasm together with the understanding of molecular mechanisms governing this complex trait. Thus, NUE, its components, nitrogen uptake efficiency (NUpE) and nitrogen utilization efficiency (NUtE), and NUE-related traits heritability were evaluated in ancient (Cappelli, Capeiti, Russello, and Mazzancoio) and modern (Messapia, Tiziana, Svevo, and Normanno) wheat genotypes for tackling nitrogen (N) and/or water limitation in both growth chamber and field experiments. Our results exhibited a reduction of NUE, NUpE, and NUtE under water and combined (nitrogen + water) stress in all the genotypes, as expected. The contribution of genetic variability on phenotypic variation was significant for NUtE, harvest index, post-anthesis nitrogen uptake (PANU), and biomass production traits. Moreover, the stress tolerance indexes, calculated and bi-plotted for N and water stresses, exhibited two distinct clusters for many traits as then confirmed by principal component analysis. Although modern varieties showed higher crop yield and NUE under conventional N and water regimes, ancient varieties exhibited best performances to cope with both stresses, mainly under water limitation. Finally, the usage index, which takes into account total biomass increase, underlined that old genotypes were less affected by both stresses during crop cycle. In particular, these genotypes showed the best performances for NUE and its components under both stresses at stem elongation and milk ripening as shown also by PANU. In addition, at these stages, nitrate and ammonium transporter gene expressions in the root were performed, showing the highest activity in ancient varieties. In conclusion, the identification of NUE traits during a specific crop cycle stage, under both N and water limitation, will help in the breeding of more resilient varieties in Mediterranean sustainable agriculture by reducing N supply.

Effects of cadmium on soil nitrification in the rhizosphere of Robinia pseudoacacia L. seedlings under elevated atmospheric CO2 scenarios

The individual impacts of elevated CO2 and heavy metals on soil nitrification have been widely reported. However, studies on the combined effects of elevated CO2 and heavy metals on soil nitrification are still limited. Here, a 135-day growth chamber experiment was conducted to investigate the impacts of elevated CO2 and cadmium (Cd) levels on soil nitrification in the rhizosphere of Robinia pseudoacacia L. seedlings. Elevated CO2 combined with Cd pollution generally stimulated ammonia monooxygenase (AMO), hydroxylamine oxidase (HAO), and nitrite oxidoreductase (NXR) activities. Compared to the control, the abundance of ammonia-oxidizing bacteria (AOB) at day 135 and ammonia-oxidizing archaea (AOA) increased significantly (p < 0.05) and the abundance of AOB at days 45 and 90 and that of the nitrite-oxidizing bacteria (NOB) decreased under elevated CO2 + Cd. Elevated CO2 mostly led to a significant (p < 0.05) decrease in soil nitrification intensity in the rhizosphere of R. pseudoacacia exposed to Cd. The effects of Cd, CO2, and their interaction on HAO and NXR activities were significant (p < 0.01). Soil pH, the C/N ratio, water-soluble organic carbon, water-soluble organic nitrogen (WSON), and total carbon were the dominant factors (p < 0.05) affecting nitrifying enzyme activities and nitrification intensity in rhizosphere soils. Elevated CO2 clearly affected AOA, AOB, and NOB community structures and dominant genera by shaping C/N ratio, pH, and Cd and WSON contents in rhizosphere soils under Cd exposure. Overall, the responses of pH, C/N ratio, WSON, and Cd to elevated CO2 led to changes in rhizosphere soil nitrification under the combination of elevated CO2 and Cd pollution.

Seedling Disease of Corn Caused by Pythium Increases With Proximity of Rye

Yield loss of corn following a winter rye cover crop (CC) has been associated with increases in seedling disease caused by Pythium spp. We hypothesized that physical separation between the CC and corn could reduce the risk of seedling disease, and benefit corn growth and development. In a growth chamber experiment, corn seedlings were planted at 0 cm and 8 to 10 cm from terminated winter rye plants. Root rot severity was assessed at crop development stage V2, and quantitative PCR was used to estimate the abundance of Pythium clade B and clade F members present in corn roots. Radicle and seminal root rot severity was numerically greater when seedlings were planted 0 cm from terminated rye plants compared with seedlings planted 8 to 10 cm away. Moreover, a greater abundance of Pythium clade B was detected in corn grown within the terminated winter rye compared with corn planted further away (P = 0.0003). No effect of distance between corn and winter rye was detected for Pythium clade F. These data contribute to our understanding of the effect of a winter rye cover crop on corn and will inform field trial management practices for farmers to reduce occasional yield loss of corn following a winter rye cover crop.

Managing flowering time in Miscanthus and sugarcane to facilitate intra- and intergeneric crosses.

Miscanthus is a close relative of Saccharum and a potentially valuable genetic resource for improving sugarcane. Differences in flowering time within and between Miscanthus and Saccharum hinders intra- and interspecific hybridizations. A series of greenhouse experiments were conducted over three years to determine how to synchronize flowering time of Saccharum and Miscanthus genotypes. We found that day length was an important factor influencing when Miscanthus and Saccharum flowered. Sugarcane could be induced to flower in a central Illinois greenhouse using supplemental lighting to reduce the rate at which days shortened during the autumn and winter to 1 min d-1, which allowed us to synchronize the flowering of some sugarcane genotypes with Miscanthus genotypes primarily from low latitudes. In a complementary growth chamber experiment, we evaluated 33 Miscanthus genotypes, including 28 M. sinensis, 2 M. floridulus, and 3 M. ×giganteus collected from 20.9° S to 44.9° N for response to three day lengths (10 h, 12.5 h, and 15 h). High latitude-adapted M. sinensis flowered mainly under 15 h days, but unexpectedly, short days resulted in short, stocky plants that did not flower; in some cases, flag leaves developed under short days but heading did not occur. In contrast, for M. sinensis and M. floridulus from low latitudes, shorter day lengths typically resulted in earlier flowering, and for some low latitude genotypes, 15 h days resulted in no flowering. However, the highest ratio of reproductive shoots to total number of culms was typically observed for 12.5 h or 15 h days. Latitude of origin was significantly associated with culm length, and the shorter the days, the stronger the relationship. Nearly all entries achieved maximal culm length under the 15 h treatment, but the nearer to the equator an accession originated, the less of a difference in culm length between the short-day treatments and the 15 h day treatment. Under short days, short culms for high-latitude accessions was achieved by different physiological mechanisms for M. sinensis genetic groups from the mainland in comparison to those from Japan; for mainland accessions, the mechanism was reduced internode length, whereas for Japanese accessions the phyllochron under short days was greater than under long days. Thus, for M. sinensis, short days typically hastened floral induction, consistent with the expectations for a facultative short-day plant. However, for high latitude accessions of M. sinensis, days less than 12.5 h also signaled that plants should prepare for winter by producing many short culms with limited elongation and development; moreover, this response was also epistatic to flowering. Thus, to flower M. sinensis that originates from high latitudes synchronously with sugarcane, the former needs day lengths >12.5 h (perhaps as high as 15 h), whereas that the latter needs day lengths <12.5 h.

Removal of multi-contaminants from water by association of poplar and Brassica plants in a short-term growth chamber experiment.

The plant association of Populus alba L. 'Villafranca', Brassica oleracea var. acephala sebellica (kale), and B. oleracea var. capitata 'sonsma' (cabbage) was exposed to Zn, Cd, and exogenous caffeine (13CFN)-contaminated water under growth chamber conditions. In the short term of treatment (15days), poplar increased the root dry biomass (+ 25%) and decreased the chlorophyll content in new leaves (- 32%), compared to control. On the contrary, cabbage decreased the root dry biomass, enhancing the shoot dry biomass (+ 50%). Heavy metals were mainly concentrated in plant roots and in poplar reached the highest concentrations of 705 ± 232.6 and 338 ± 85.5μgg-1 DW for Zn and Cd, respectively. The ability of poplar to accumulate more Zn and Cd than kale and cabbage in plant biomass was confirmed by heavy metal contents, following the order: poplar > kale = cabbage. However, poplar and Brassica sp. association was very useful for Zn and Cd decontaminations as reported by the bioconcentration factors (> 1). The concentration of 13CFN was below 2.4ngg-1 FW in poplar and 7.4ngg-1 FW in Brassica species, suggesting the caffeine uptake and degradation by plant association. Under our experimental conditions, the removal efficiency of the system was upper to 79%, indicating the capability of Populus-Brassica association to efficiently remove Zn, Cd, and 13CFN from mixed inorganic-organic-contaminated water in short term.

Distinguishing Between the Impacts of Heat and Drought Stress on the Root Microbiome of Sorghum bicolor

Water deficit and extreme temperatures regularly and considerably reduce crop productivity. Although several studies have explored the role of the plant microbiome in drought tolerance, it remains to be determined how the often co-occurring factor of heat conjunctly shapes plant–microbe interactions. In order to compare the roles that temperature and drought stress play in plant microbial recruitment, we conducted a growth chamber experiment with a series of temperatures (22, 30, and 38°C) and watering (drought versus watered) conditions in Sorghum bicolor, sampling soil mixtures and seedling roots at 7 and 21 days after initial stress initiation. We found that bacterial root communities had the lowest α diversity when under drought and at 38°C, and that temperature influenced the β diversity of soil mixture and root microbiomes to a greater extent than watering treatment. Additionally, we observed that the relative abundances of members of phylum Actinobacteria increased both under drought and, incrementally, with higher temperatures. Furthermore, unique Actinobacteria were indicator species of either temperature or watered conditions, and indicators of high temperature in watered conditions were predominantly in the phylum Actinobacteria. Together, these data suggest that heat and drought stress differentially affect microbiome assembly in significant ways and unique Actinobacteria are recruited under either stress. This work informs our understandings of how abiotic stresses jointly shape crop microbiomes, as well as highlights the need for additional work to describe what mechanisms may be involved in host-mediated microbial recruitment and adaptation under various stresses in field-based studies. [Formula: see text] Copyright © 2021 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license .

Bacterial Microbiomes Associated with the Rhizosphere, Root Interior, and Aboveground Plant Organs of Wheat and Canola at Different Growth Stages

Beneficial bacteria associated with agricultural crops may potentially increase crop productivity and health. However, during various plant developmental processes, shifts in the diversity and function of bacterial communities often occur. This study investigated the diversity of bacterial communities associated with the rhizosphere, roots, and aboveground plant organs of wheat and canola at stem elongation, flowering, and ripening stages. The growth-chamber experiment consisted of wheat and canola grown in Orthic Brown Chernozem Calcic Kastanozem and Orthic Black Calcic Chernozem soils from agricultural fields in Saskatchewan, Canada. Rhizosphere bacterial communities of wheat and canola were mainly influenced by soil characteristics, whereas a specific root endophytic community was associated with each crop species. These results suggest that each crop may select distinct root bacterial endophytes from the rhizosphere. Bacteria associated with aboveground plant organs exhibited high variability among crop species and soils. The most abundant bacterial genera associated with the rhizosphere of the crops included Gemmatimonas, Solirubrobacter, and Nocardioides, as well as unclassified genera of families Commamonadaceae, Chitinophagaceae, and Sphingomonadaceae. Other genera (e.g., Stenotrophomonas, Streptomyces, and Variovorax) were predominant in wheat roots, whereas species of Lentzea and Pantoea were the most abundant root endophytes detected in canola. Bacterial communities associated with aboveground organs consisted mostly of species of Corynebacterium and Pseudomonas, and unclassified members of the family Enterobacteriacaeae. This study also revealed that plant growth stages can modulate the diversity of rhizosphere and endophytic bacteria. The influence of plant growth stages on the bacterial microbiome associated with wheat and canola was crop and organ specific.

Detection and Quantification of Rhizoctonia solani and Rhizoctonia solani AG1-IB Causing the Bottom Rot of Lettuce in Tissues and Soils by Multiplex qPCR.

In the muck soil region of southwestern Quebec, vegetable growers are threatened by several soilborne diseases, particularly the bottom rot of lettuce caused by the fungus Rhizoctonia solani. The particularly warm temperature of the few last seasons was marked by an increase in disease severity, and the associated yield losses were significant for Quebec lettuce growers. In the absence of registered fungicides and resistant cultivars, the management of Rhizoctonia solani-induced diseases in lettuce is based on good agricultural practices, which require detailed knowledge of the pathogen. In this study, Rhizoctonia solani fungal strains were isolated from infected field-grown lettuce plants presenting bottom rot symptoms to determine the anastomotic groups (AGs) of these isolates by internal transcribed spacer region (ITS) sequencing. Rhizoctonia solani AG 1-IB was identified as the main anastomotic group causing bottom rot lettuce in field-grown lettuce in organic soils in the Montérégie region. Two specific and sensitive quantitative PCR assays were then developed for R. solani AG1-IB and R. solani. The AG 1-IB qPCR assay amplified all strains of R. solani AG 1-IB tested, and no PCR product was obtained for any non-target strains. The R. solani qPCR assay amplified all strains of R. solani and did not amplify non-target strains, except for two strains of binucleate Rhizoctonia AG-E. In artificially inoculated soils, the sensitivity of both qPCR assays was set to 1 μg of sclerotia g−1 of dry soil. In the growth chamber experiment, a minimum concentration between 14 and 42 μg sclerotia g−1 of dry soil was required to induce the development of symptoms on the lettuce. Indeed, the AG 1-IB qPCR assay was sensitive enough to detect the lowest soil concentration of AG1-IB capable of inducing symptoms in head lettuce. In addition, the qPCR assays successfully detected R. solani and R. solani AG 1-IB from infected plant tissue samples and soil samples from lettuce fields. The qPCR assays developed in this study will be useful tools in lettuce bottom rot management.

Assessing the mechanisms underlying sunflower grain weight and oil content responses to temperature during grain filling

Temperature and solar radiation during grain filling are the main drivers of grain weight and composition in several crops. While significant progress has been done on the effect of solar radiation intercepted by the plants (ISR) on grain weight (GW, mg) and oil content (OC, mg grain−1) of sunflower (Helianthus Annus L.), the effects of temperature on these traits are far from clear. As temperature affects the rate of plant development, increasing temperature would shorten grain filling duration and so, the critical period for ISR effect on GW and OC (indirect effect of temperature). However, direct effects of temperature non-mediated by ISR accumulation could also affect these traits. The objectives of this work were a) to characterize the responses of grain weight and oil content to mean temperature during grain filling in two traditional sunflower hybrids and b) to determine whether these responses can be exclusively explained by changes in ISR or any direct effect of temperature should also be considered. Two experimental approaches have been used to address these objectives: i) temperature manipulation at constant incident radiation in growth chambers; ii) modification of radiation interception in the field in different locations and years (different mean temperatures). Growth chamber experiments showed that GW and OC respond to temperature in a plateau lineal shape. At low incident radiation such as that of growth chambers, temperature effects on GW can be exclusively explained by reductions in ISR, while both direct and indirect effects of MT are evident on OC. Results obtained in field experiments confirmed this behavior at low radiation. Both GW and OC exponentially increased up to a maximum with ISR disregarding MT. Mathematical models were established to describe the responses of GW and OC to MT and ISR. These models consider MT x ISR interactive effects on GW; and MT - ISR additive effects on OC. The combination of growth chamber and field experiments observations allowed to unravel different mechanisms underlying the responses of GW and OC to temperature: at low incident radiation intensity, increasing temperature decreased GW exclusively by reducing ISR accumulation (indirect effects) while at higher radiation, temperature displays both direct (non-mediated by ISR) and indirect (ISR mediated) effects on GW. OC is affected by temperature in both direct and indirect way disregarding ISR. This work constitutes an important contribution towards understanding the effect of temperature during grain filling on sunflower yield and its relationship to solar radiation effects.