The main objective of this work was to investigate the temporal variability of hydrochemical parameters in two coastal regions of the Northeastern Black Sea: the Gelendzhik bay, influenced by anthropogenic activities and the Golubaya bay an open coastal region. Dissolved oxygen, biochemical oxygen demand, pH, alkalinity, phosphate, organic phosphorus, silicates, nitrates, nitrites, ammonia, organic nitrogen, oil products and heavy metals were measured. Si/P and Si/N ratios showed that the Gelendzhik bay waters were significantly enriched in nitrogen and phosphorus compounds. Unlike the Golubaya bay, phosphates were always present in the Gelendzhik bay, and development of photo-synthesis was not limited by these. Features of seasonal variability of nutrients in the Gelendzhik bay (increased concentrations and pronounced summer–autumn maximum) appeared to be a result of human impact—outflow of nutrients with shore input and recreational activities during the summer holiday season. The data obtained indicate that pollution from local spots from the coast of the Black Sea, related primarily to eutrophication, could play a large role in the nutrient balance of the sea and could affect its ecological state.