Modelling of the nerve impulse is often simplified to one spatial dimension, for example by using cable theory. In reality signals propagate in a complex three dimensional environment, and neurons may electrostatically affect cells in close proximity. To investigate this, the electrochemistry of the neuron environment is modelled using the Poisson--Nernst--Planck theory of electrodiffusion. An accurate numerical solver for the Poisson--Nernst--Planck equations in three dimensions is developed. The solver, integrated with a simple computational model of ion channels, is capable of simulating the dynamics of multiple electrical charge species for an arbitrary configuration of membranes and ion channels. Preliminary simulations of simplified neurons show resting membrane potentials broadly consistent with the Goldman equation of electrochemistry, but with interesting differences in some cases. The model can be applied to the detailed study of the nerve impulse. References Hundsdorfer, W., Numerical Solution of Time-Dependent Advection-Diffusion-Reaction Equations , Springer--Verlag, Berlin, 2003. Kurnikova, M. G., Coalson, R. D., Graf, P. and Nitzan, A., A Lattice Relaxation Algorithm for Three-Dimensional Poisson--Nernst--Planck Theory with Application to Ion Transport through the Gramicidin A Channel, Biophysical Journal , 76 , 642--656, 1999. http://www.biophysj.org/cgi/content/full/76/2/642 Nicholls, J. G., Martin, A. R., Wallace B. G. and Fuchs, P. A., From Neuron to Brain , Sinauer Associates, Sunderland, MA., 2001. Nicholson, C., Extracellular space as the pathway for neuron-glial cell interaction, In Kettenmann, H. and Ransom, B.R., editors, Neuroglia , Oxford University Press, New York, 387--397, 1995. Qian, N., and Sejnowski, T. J., Electrodiffusion Model of Electrical Conduction in Neuronal Processes, In Woody, C. D., and McGaugh, J. L., editors, Cellular Mechanisms of Conditioning and Behavioral Plasticity , Plenum Press, New York, 237--244, 1988. Visscher, P.B., Fields and Electrodynamics , John Wiley and sons, USA, 1988. Chung, S. H., Andersen, O. S. and Krishnamurthy, V., Biological Membrane Ion Channels: Dynamics, Structure and Applications , Springer Science+Business Media, New York, 2007. Crank, J. and Nicolson, P., A practical method for numerical evaluation of solutions of partial differential equations of the heat conduction type, Advances in Computational Mathematics , 6 , 207--226, 1996. doi:10.1007/BF02127704 Goldman, D. E., Potential, Impedance, and Rectification in Membranes, Journal of General Physiology , 27 , 37--60, 1943. http://www.jgp.org/cgi/reprint/27/1/37 Hille, B., Ion Channels of Excitable Membranes , Sinauer Associates, Sunderland, MA., 2001.
Read full abstract