Background: Bovine alphaherpesvirus type 1 (BoAHV-1) is a significant pathogen causing respiratory diseases and reproductive issues in cattle and buffaloes, resulting in substantial economic losses globally. This study provides a comprehensive analysis of the genetic characteristics of BoAHV-1 isolates from India, focusing on glycoprotein genes US6 (gD) and US8(gE). Methods: Ten archival isolates that were stored at the ICAR-NIVEDI BSL-2 facility were chosen, revived on MDBK cell lines and subjected for molecular characterization through PCR amplification of partial US6 (gD) and US8 (gE) gene. Genome alignment and phylogenetic analysis were performed by GeneTool and Mega 11. Result: Phylogenetic analysis of both genes revealed two cluster formation, BoAHV-1.1, BoAHV-1.2 in one cluster and BoAHV-5, Bubaline alphaherpesvirus (BuAHV-1) in another cluster. All ten isolates displayed close relation to BoAH 1.1. Seven isolates from each phylogenetic analysis showed 100% genome identity to vaccine strains from USA- Bovishield Gold MLV, Pyramid IBR MLV, Switzerland Cooper strain, ATCC Los Angeles strain, previously reported BoAHV 1.1 strains of India and Egypt. Genome identity of BoAHV-1.1 against BoAHV-1.2 was 97.70 to 98.70% for gD gene and 99.0 to 99.70% for gE gene respectively. The analysis highlights the higher genome identity among BoAHV-1 subtypes in the gE gene, suggesting its potential for developing more sensitive immunoassays for seroepidemiology. The developed assay could also be exploited for detecting BoAHV-5 infections. The findings contribute to the knowledge base essential for development of companion ELISA for implementing Differentiating Infected from Vaccinated Animals (DIVA) vaccination strategies.
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