Direct numerical simulations of an Ekman layer are performed to study flow evolution during the response of an initially neutral boundary layer to stable stratification. The Obukhov length, L, is varied among cases by imposing a range of stable buoyancy fluxes at the surface to mimic ground cooling. The imposition of constant surface buoyancy flux , i.e. constant-flux stability, leads to a buoyancy difference between the ground and background that tends to increase with time, unlike the constant-temperature stability case where a constant surface temperature is imposed. The initial collapse of turbulence in the surface layer owing to surface cooling that occurs over a time scale proportional to $$L/u_*$$ , where $$u_*$$ is the friction velocity, is followed by turbulence recovery. The flow accelerates, and a “low-level jet” (LLJ) with inertial oscillations forms during the turbulence collapse. Turbulence statistics and budgets are examined to understand the recovery of turbulence. Vertical turbulence exchange, primarily by pressure transport, is found to initiate fluctuations in the surface layer and there is rebirth of turbulence through enhanced turbulence production as the LLJ shear increases. The turbulence recovery is not monotonic and exhibits temporal intermittency with several collapse/rebirth episodes. The boundary layer adjusts to an increase in the surface buoyancy flux by increased super-geostrophic velocity and surface stress such that the Obukhov length becomes similar among the cases and sufficiently large to allow fluctuations with sustained momentum and heat fluxes. The eventual state of fluctuations, achieved after about two inertial periods ( $$ft \approx 4\pi $$ ), corresponds to global intermittency with turbulent patches in an otherwise quiescent background. Our simplified configuration is sufficient to identify turbulence collapse and rebirth, global and temporal intermittency, as well as formation of low-level jets, as in observations of the stratified atmospheric boundary layer.