Global Distribution Patterns Research Articles

Global Distribution, Dispersal Patterns, and Trend of Several Omicron Subvariants of SARS-CoV-2 across the Globe.

Our study aims to describe the global distribution and dispersal patterns of the SARS-CoV-2 Omicron subvariants. Genomic surveillance data were extracted from the CoV-Spectrum platform, searching for BA.1*, BA.2*, BA.3*, BA.4*, and BA.5* variants by geographic region. BA.1* increased in November 2021 in South Africa, with a similar increase across all continents in early December 2021. BA.1* did not reach 100% dominance in all continents. The spread of BA.2*, first described in South Africa, differed greatly by geographic region, in contrast to BA.1*, which followed a similar global expansion, firstly occurring in Asia and subsequently in Africa, Europe, Oceania, and North and South America. BA.4* and BA.5* followed a different pattern, where BA.4* reached high proportions (maximum 60%) only in Africa. BA.5* is currently, by Mid-August 2022, the dominant strain, reaching almost 100% across Europe, which is the first continent aside from Africa to show increasing proportions, and Asia, the Americas, and Oceania are following. The emergence of new variants depends mostly on their selective advantage, translated as enhanced transmissibility and ability to invade people with existing immunity. Describing these patterns is useful for a better understanding of the epidemiology of the VOCs' transmission and for generating hypotheses about the future of emerging variants.

Historical biogeography and diversification of ringless Amanita (section Vaginatae) support an African origin and suggest niche conservatism in the Americas

Ectomycorrhizal fungi (ECM) sustain nutrient recycling in most terrestrial ecosystems, yet we know little about what major biogeographical events gave rise to present-day diversity and distribution patterns. Given the strict relationship between some ECM lineages and their hosts, geographically well-sampled phylogenies are central to understanding major evolutionary processes of fungal biodiversity patterns. Here, we focus on Amanita sect. Vaginatae to address global diversity and distribution patterns. Ancestral-state-reconstruction based on a 4-gene timetree with over 200 species supports an African origin between the late Paleocene and the early Eocene (ca. 56 Ma). Major biogeographic “out-of-Africa” events include multiple dispersal events to Southeast Asia (ca. 45–21 Ma), Madagascar (ca. 18 Ma), and the current Amazonian basin (ca. 45–36 Ma), the last two likely trans-oceanic. Later events originating in Southeast Asia involve Nearctic dispersal to North America (ca. 20–5 Ma), Oceania (Australia and New Zealand; ca. 15 Ma), and Europe (ca. 10–5 Ma). Subsequent dispersals were also inferred from Southeast Asia to East Asia (ca. 4 Ma); from North America to East Asia (ca. 11–8 Ma), Southeast Asia (ca. 19–2 Ma), Northern Andes (ca. 15 Ma), and Europe (ca. 15–2 Ma), respectively; and from the Amazon to the Caribbean region (ca. 25–20 Ma). Finally, we detected a significant increase in the net diversification rates in the branch leading to most northern temperate species in addition to higher state-dependent diversification rates in temperate lineages, consistent with previous findings. These results suggest that species of sect. Vaginatae likely have higher dispersal ability and higher adaptability to new environments, in particular compared to those of its sister clade, sect. Caesareae. Overall, the much wider distribution of A. sect. Vaginatae, from pan-tropical to pan-arctic, provides a unique window to understanding niche conservatism across a species-rich clade of ECM fungi.

A global marine particle size distribution dataset obtained with the Underwater Vision Profiler 5

Abstract. Marine particles of different nature are found throughout the global ocean. The term “marine particles” describes detritus aggregates and fecal pellets as well as bacterioplankton, phytoplankton, zooplankton and nekton. Here, we present a global particle size distribution dataset obtained with several Underwater Vision Profiler 5 (UVP5) camera systems. Overall, within the 64 µm to about 50 mm size range covered by the UVP5, detrital particles are the most abundant component of all marine particles; thus, measurements of the particle size distribution with the UVP5 can yield important information on detrital particle dynamics. During deployment, which is possible down to 6000 m depth, the UVP5 images a volume of about 1 L at a frequency of 6 to 20 Hz. Each image is segmented in real time, and size measurements of particles are automatically stored. All UVP5 units used to generate the dataset presented here were inter-calibrated using a UVP5 high-definition unit as reference. Our consistent particle size distribution dataset contains 8805 vertical profiles collected between 19 June 2008 and 23 November 2020. All major ocean basins, as well as the Mediterranean Sea and the Baltic Sea, were sampled. A total of 19 % of all profiles had a maximum sampling depth shallower than 200 dbar, 38 % sampled at least the upper 1000 dbar depth range and 11 % went down to at least 3000 dbar depth. First analysis of the particle size distribution dataset shows that particle abundance is found to be high at high latitudes and in coastal areas where surface productivity or continental inputs are elevated. The lowest values are found in the deep ocean and in the oceanic gyres. Our dataset should be valuable for more in-depth studies that focus on the analysis of regional, temporal and global patterns of particle size distribution and flux as well as for the development and adjustment of regional and global biogeochemical models. The marine particle size distribution dataset (Kiko et al., 2021) is available at https://doi.org/10.1594/PANGAEA.924375.

ITHscore: comprehensive quantification of intra-tumor heterogeneity in NSCLC by multi-scale radiomic features.

To quantify intra-tumor heterogeneity (ITH) in non-small cell lung cancer (NSCLC) from computed tomography (CT) images. We developed a quantitative ITH measurement-ITHscore-by integrating local radiomic features and global pixel distribution patterns. The associations of ITHscore with tumor phenotypes, genotypes, and patient's prognosis were examined on six patient cohorts (n = 1399) to validate its effectiveness in characterizing ITH. For stage I NSCLC, ITHscore was consistent with tumor progression from stage IA1 to IA3 (p < 0.001) and captured key pathological change in terms of malignancy (p < 0.001). ITHscore distinguished the presence of lymphovascular invasion (p = 0.003) and pleural invasion (p = 0.001) in tumors. ITHscore also separated patient groups with different overall survival (p = 0.004) and disease-free survival conditions (p = 0.005). Radiogenomic analysis showed that the level of ITHscore in stage I and stage II NSCLC is correlated with heterogeneity-related pathways. In addition, ITHscore was proved to be a stable measurement and can be applied to ITH quantification in head-and-neck cancer (HNC). ITH in NSCLC can be quantified from CT images by ITHscore, which is an indicator for tumor phenotypes and patient's prognosis. • ITHscore provides a radiomic quantification of intra-tumor heterogeneity in NSCLC. • ITHscore is an indicator for tumor phenotypes and patient's prognosis. • ITHscore has the potential to be generalized to other cancer types such as HNC.

An integrated high-resolution mapping shows congruent biodiversity patterns of Fagales and Pinales.

Summary The documentation of biodiversity distribution through species range identification is crucial for macroecology, biogeography, conservation, and restoration. However, for plants, species range maps remain scarce and often inaccurate.We present a novel approach to map species ranges at a global scale, integrating polygon mapping and species distribution modelling (SDM). We develop a polygon mapping algorithm by considering distances and nestedness of occurrences. We further apply an SDM approach considering multiple modelling algorithms, complexity levels, and pseudo‐absence selections to map the species at a high spatial resolution and intersect it with the generated polygons.We use this approach to construct range maps for all 1957 species of Fagales and Pinales with data compilated from multiple sources. We construct high‐resolution global species richness maps of these important plant clades, and document diversity hotspots for both clades in southern and south‐western China, Central America, and Borneo. We validate the approach with two representative genera, Quercus and Pinus, using previously published coarser range maps, and find good agreement.By efficiently producing high‐resolution range maps, our mapping approach offers a new tool in the field of macroecology for studying global species distribution patterns and supporting ongoing conservation efforts.

Molecular Phylogeny Reveals the Past Transoceanic Voyages of Drywood Termites (Isoptera, Kalotermitidae).

Termites are major decomposers in terrestrial ecosystems and the second most diverse lineage of social insects. The Kalotermitidae form the second-largest termite family and are distributed across tropical and subtropical ecosystems, where they typically live in small colonies confined to single wood items inhabited by individuals with no foraging abilities. How the Kalotermitidae have acquired their global distribution patterns remains unresolved. Similarly, it is unclear whether foraging is ancestral to Kalotermitidae or was secondarily acquired in a few species. These questions can be addressed in a phylogenetic framework. We inferred time-calibrated phylogenetic trees of Kalotermitidae using mitochondrial genomes of ∼120 species, about 27% of kalotermitid diversity, including representatives of 21 of the 23 kalotermitid genera. Our mitochondrial genome phylogenetic trees were corroborated by phylogenies inferred from nuclear ultraconserved elements derived from a subset of 28 species. We found that extant kalotermitids shared a common ancestor 84 Ma (75–93 Ma 95% highest posterior density), indicating that a few disjunctions among early-diverging kalotermitid lineages may predate Gondwana breakup. However, most of the ∼40 disjunctions among biogeographic realms were dated at <50 Ma, indicating that transoceanic dispersals, and more recently human-mediated dispersals, have been the major drivers of the global distribution of Kalotermitidae. Our phylogeny also revealed that the capacity to forage is often found in early-diverging kalotermitid lineages, implying the ancestors of Kalotermitidae were able to forage among multiple wood pieces. Our phylogenetic estimates provide a platform for critical taxonomic revision and future comparative analyses of Kalotermitidae.

Spontaneous and ART-induced large offspring syndrome: similarities and differences in DNA methylome

ABSTRACT Large/abnormal offspring syndrome (LOS/AOS) is a congenital overgrowth syndrome reported in ruminants produced by assisted reproduction (ART-LOS) which exhibit global disruption of the epigenome and transcriptome. LOS/AOS shares phenotypes and epigenotypes with the human congenital overgrowth condition Beckwith-Wiedemann syndrome. We have reported that LOS occurs spontaneously (SLOS); however, to date, no study has been conducted to determine if SLOS has the same methylome epimutations as ART-LOS. In this study, we performed whole-genome bisulphite sequencing to examine global DNA methylation in bovine SLOS and ART-LOS tissues. We observed unique patterns of global distribution of differentially methylated regions (DMRs) over different genomic contexts, such as promoters, CpG Islands, shores and shelves, as well as at repetitive sequences. In addition, we included data from two previous LOS studies to identify shared vulnerable genomic loci in LOS. Overall, we identified 320 genomic loci in LOS that have alterations in DNA methylation when compared to controls. Specifically, there are 25 highly vulnerable loci that could potentially serve as molecular markers for the diagnosis of LOS, including at the promoters of DMRT2 and TBX18, at the imprinted gene bodies of IGF2R, PRDM8, and BLCAP/NNAT, and at multiple CpG Islands. We also observed tissue-specific DNA methylation patterns between muscle and blood, and conservation of ART-induced DNA methylation changes between muscle and blood. We conclude that as ART-LOS, SLOS is an epigenetic condition. In addition, SLOS and ART-LOS share similarities in methylome epimutations.

New material of marattialean fern (Danaeopsis fecunda) from the Late Triassic in China with considerations on the tempo-spatial distribution pattern of Danaeopsis

The genus Danaeopsis Heer ex Schimper is a typical and widespread Triassic eusporangiate fern and is also an important species in China with abundant records. In this study, a further investigation of Danaeopsis fecunda is achieved based on additional specimens from Yunnan Province, China. New features for the leaf morphology and pinnae arrangement of D. fecunda have been extended. The fossil record in China suggest that D. fecunda is a key species in the Northern Floristic Region (NFR) of China, spreading from the NFR to the Southern Floristic Region via the transitional zone in the Carnian and distributing in Yunnan in the Norian. In addition, the global tempo-spatial distribution pattern and the palaeoclimate implications of Danaeopsis are discussed. The genus Danaeopsis was distributed in Europe, Asia and even in Australia with warmer and humid, rarely semi-arid conditions in the Triassic. The wide-ranging distribution of Danaeopsis could be largely related to the palaeoclimatic pattern in the Triassic.

Water clarity mapping of global lakes using a novel hybrid deep-learning-based recurrent model with Landsat OLI images

Information regarding water clarity at large spatiotemporal scales is critical for understanding comprehensive changes in the water quality and status of ecosystems. Previous studies have suggested that satellite observation is an effective means of obtaining such information. However, a reliable model for accurately mapping the water clarity of global lakes (reservoirs) is still lacking due to the high optical complexity of lake waters. In this study, by using gated recurrent units (GRU) layers instead of full-connected layers from Artificial Neural Networks (ANNs) to capture the efficient sequence information of in-situ datasets, we propose a novel and transferrable hybrid deep-learning-based recurrent model (DGRN) to map the water clarity of global lakes with Landsat 8 Operational Land Imager (OLI) images. We trained and further validated the model using 1260 pairs of in-situ measured water clarity and surface reflectance of Landsat 8 OLI images with Google Earth Engine. The model was subsequently utilized to construct the global pattern of temporal and spatial changes in water clarity (lake area>10 km2) from 2014 to 2020. The results show that the model can estimate water clarity with good performance (R2 = 0.84, MAE = 0.55, RMSE = 0.83, MAPE = 45.13%). The multi-year average of water clarity for global lakes (16,475 lakes) ranged from 0.0004 to 9.51 m, with an average value of 1.88 ± 1.24 m. Compared to the lake area, elevation, discharge, residence time, and the ratio of area to depth, water depth was the most important factor that determined the global spatial distribution pattern of water clarity. Water clarity of 15,840 global lakes between 2014 and 2020 remained stable (P ≥ 0.05); while there was a significant increase in 243 lakes (P < 0.05) and a decrease in 392 lakes (P < 0.05). However, water clarity in 2020 (COVID-19 period) showed a significant increase in most global lakes, especially in China and Canada, suggesting that the worldwide lockdown strategy due to COVID-19 might have improved water quality, espically water clarity, dueto the apparent reduction of anthropogenic activities.

Energetically Informed Niche Models of Hydrogenotrophs Detected in Sediments of Serpentinized Fluids of the Samail Ophiolite of Oman

AbstractA geochemical gradient established by mixing between reduced, hyperalkaline (pH &gt; 11), H2‐rich fluids generated through the process of serpentinization and surrounding surface water (pH ∼ 8) in the Samail Ophiolite of Oman provides an opportunity to characterize the geochemical and biological factors that influence the distribution of H2 oxidizing chemotrophs, hydrogenotrophs. In this study, 16S rRNA gene amplicon sequencing was implemented to characterize hydrogenotrophs in sediments underlying surface expressed serpentinized fluids in Oman. Hydrogenotroph phylotype distribution was evaluated as functions of chemical energy supplies for their given metabolic redox reactions. Through this approach, it was discovered that hydrogenotrophic taxa are likely constrained to sediments with overlying fluids that have &lt;∼60 μm O2, including microorganisms of the genus, Hydrogenophaga. Sulfate reducers of the family, Thermodesulfovibrionaceae, likely require &gt;∼10 μm SO4−2 for survival. In sediments with fluids having &gt;∼10 μm SO4−2, sulfate reducers likely outcompete microorganisms of the methanogen genus, Methanobacterium, for H2. Additionally, differences in distribution between Thermodesulfovibrionaceae and Methanobacterium may be driven by the availability of electron acceptors and the redox reaction that is most energy yielding in the fluid. Taken together, observations from the Oman geochemical gradient result in a hydrogenotroph niche model that can be used to evaluate global distribution patterns of hydrogenotrophs in continental serpentinized fluids. On a global scale, based on previous studies, Methanobacterium is constrained to fluids that have &lt;∼10 μm SO4−2.

Common practices in patient care after mammaplasty and perioperative safety measures to prevent thromboembolic events – An observational study across all continents

Most plastic surgeons have encountered complications related to venous thromboembolism in their profession. However, considerable deficits in risk assessment and prophylaxis have been described. As outpatient procedures are increasing, so are concerns with regard to patient safety. The presented study investigates the global distribution pattern of patient care for mammaplasties and compares international common practices of perioperative safety measures to prevent thromboembolic events. A questionnaire was sent to over 5000 plastic surgeons in 77 countries. The survey inquired about surgeon demographics, standard perioperative safety measures, type of thrombosis prophylaxis, and international patterns of patient care. The results were evaluated and correlated with the evidence-based literature. A total of 1431 surveys were gathered (response rate: 29%). The gathered data show international disparity with regard to inpatient vs. outpatient care. Mammaplasties in the USA are being performed as same-day surgeries in >80% of cases, while globally inpatient and outpatient procedures are distributed evenly. Also, we found no international consensus with regard to safety measures to prevent thromboembolic events. Geographical regions showed differences with regard to type, dosage, timing, and duration of thrombosis prophylaxis. International practice patterns remain incoherent. This highlights the need for coherent and detailed global guidelines for plastic surgical interventions. High-quality studies are needed in order to establish evidence-based, standardized, and universally applicable practice guidelines.

Molecular Data Reveal a Cryptic Diversity in the Genus Urotricha (Alveolata, Ciliophora, Prostomatida), a Key Player in Freshwater Lakes, With Remarks on Morphology, Food Preferences, and Distribution.

Species of the ciliate genus Urotricha are key players in freshwater plankton communities. In the pelagial of lakes, about 20 urotrich species occur throughout an annual cycle, some of which play a pivotal role in aquatic food webs. For example, during the phytoplankton spring bloom, they consume a remarkable proportion of the algal production. In ecological studies, urotrich ciliates are usually merely identified to genus rank and grouped into size classes. This is unsatisfying considering the distinct autecological properties of individual species and their specific spatial and temporal distribution patterns. As a basis for future research, we characterized in detail four common urotrich morphotypes, i.e., specimens identified as U. furcata and tentatively as U. agilis, U. pseudofurcata, and U. castalia, using state-of-the-art methods. We used an integrative polyphasic approach, in which morphological studies (in vivo observation, silver staining methods, scanning electron microscopy) were linked with a molecular approach exploiting four different gene fragments as taxonomic DNA barcodes with different resolution potential (SSU rDNA, ITS-1, ITS-2, hypervariable V4 and V9 regions of the SSU rDNA). We shed light on the diversity of urotrich ciliates as well as on their global distribution patterns, and annual cycles. Additionally, we coupled individual species occurrences and environmental parameters, and subsequently modeled the distribution and occurrence, using logistic regressions. Furthermore, for one strain putatively identified as U. castalia, we ascertained the optimal cultivation media and food preferences. Thereby, our comprehensive view on these important freshwater ciliates that frequently occur in environmental high throughput sequencing datasets worldwide will allow future studies to better exploit protistan plankton data from lakes.

Impact of dissolved organic matter and environmental factors on methylmercury concentrations across aquatic ecosystems inferred from a global dataset

Mercury (Hg) input into ecosystems is estimated to have increased by twofold to fivefold since the industrial revolution. In aquatic ecosystems, methylmercury (MeHg) receives the most attentions of all the Hg species due to its neurotoxicity and strong bioaccumulation capacity in food chain. Dissolved organic matter (DOM) is crucial in impacting aquatic Hg transformation. However, only few spatially constrained studies have attempted to quantify the relative importance of DOM and other factors (e.g., Hg availability, temperature, pH, and land-use type) on MeHg concentration. In this study, we collected data of 585 water samples at 373 sites globally, including lakes, rivers, estuaries, and wetlands, and characterized the global pattern of MeHg distribution and environmental drivers of aquatic MeHg concentration. Our results showed that MeHg concentrations ranged from detection limits to 11 (geometric mean 0.11 and average 0.29) ng/L, and the highest MeHg concentration and Hg methylation potential were observed in wetlands. A positive relationship was observed between MeHg fraction in the total mercury (THg) and DOM for all the aquatic ecosystems. Using the structural equation modeling, we found that Hg availability was a dominant factor in impacting water MeHg concentration followed by DOM. According to 129 samples of specific DOM source information, we found that the percentage of THg as MeHg (%MeHg) in water dominated by the autochthonous DOM was higher than that dominated by the allochthonous DOM. Our results could advance understanding of aquatic Hg cycling and their environmental drivers, which are fundamental for predicting and mitigating MeHg productions and its potential health risks for humans.

A review of the biology, distribution patterns and management of the invasive species Amaranthus palmeri S. Watson (Palmer amaranth): Current and future management challenges

AbstractAmaranthus palmeri S. Watson (Palmer amaranth) is an invasive agricultural weed that has quickly risen from a state of relative obscurity to now being globally regarded as one of the most economically destructive and difficult to manage weed species. It is now found in more than 45 countries where it poses a serious threat to agricultural production systems. Amaranthus palmeri is known to aggressively compete against crop plants for resources such as light, space, nutrients and soil moisture, all of which can result in significant crop yield reduction or even lead to crop failure. It has also been reported that A. palmeri is highly prone to evolve herbicide resistance; this makes management exceedingly challenging. Whilst there have been several control approaches introduced to manage the spread and impact of A. palmeri, many of them require more specific and focused research for their successful local and widespread application. In this regard, this global review explores the species’ biology and global distribution patterns, together with previous and current management strategies. It also explores and identifies promising areas of research that still require further investigation to more confidently assist in the control and containment of this globally concerning weed.

Global biogeography of living brachiopods: Bioregionalization patterns and possible controls.

The global distribution patterns of 14918 geo-referenced occurrences from 394 living brachiopod species were mapped in 5° grid cells, which enabled the visualization and delineation of distinct bioregions and biodiversity hotspots. Further investigation using cluster and network analyses allowed us to propose the first systematically and quantitatively recognized global bioregionalization framework for living brachiopods, consisting of five bioregions and thirteen bioprovinces. No single environmental or ecological variable is accountable for the newly proposed global bioregionalization patterns of living brachiopods. Instead, the combined effects of large-scale ocean gyres, climatic zonation as well as some geohistorical factors (e.g., formation of land bridges and geological recent closure of ancient seaways) are considered as the main drivers at the global scale. At the regional scale, however, the faunal composition, diversity and biogeographical differentiation appear to be mainly controlled by seawater temperature variation, regional ocean currents and coastal upwelling systems.

Global cultivation of wheat crops induces considerable shifts in the range and niche of species relative to their wild progenitors

Species’ range and niche play key roles in understanding ecological and biogeographical patterns, especially in projecting global biotic homogenization and potential distribution patterns of species under global change scenarios. However, few studies have investigated the ability of crop cultivation to influence potential range sizes and niche shifts of species. Wheat and its wild progenitors share the same origin and evolutionary history, and thus provide an excellent system to explore this topic. Using ensembled ecological niche models and niche dynamic models, we studied the potential range sizes of wheat and its wild progenitors, as well as their niche dynamics. Our results showed that wheat had larger range size and niche breadth than its wild progenitors, suggesting that wheat cultivation is a more powerful driver of range and niche expansion than natural niche evolution. Additionally, wheat and its wild progenitors occupied different niche positions, and the former did not conserve the niches inherited from the latter, implying that wheat cultivation considerably induces niche shifts. The niche dynamics between wheat and its wild progenitors were not only closely associated with cultivation but were also modified by the niche conservatism of its wild progenitors. In contrast to most invasive plants, wheat, as a global staple crop species, did not conserve the niche space inherited from its wild progenitors, suggesting that compared with most plant invasions, cultivation may have a stronger effect on niche shifts. Therefore, global niche shifts induced by crop cultivation need much more attention, though the underlying mechanisms require further study.

Particulate organic carbon exports from the terrestrial biosphere controlled by erosion

The transport of particulate organic carbon (POC) through rivers from land to sea affects the redistribution of global organic carbon. However, because of the limitation of the quantity and quality of monitoring data, the POC magnitude, scale and global distribution pattern of land-sea migration are still not well understood. Therefore, based on an updated GEMS-GLORI database and other reanalysis data, we use the soil erosion model (Ferosion), total suspended solids model (Ftss), and runoff model (Frunoff) to re-analyze and generate the POC flux of major rivers in the world dataset. The major results are as follows: the POC flux from global terrestrial biosphere rivers exports approximately 0.12–0.20 Pg C to oceans every year, including 0.20 Pg Ferosion, 0.17 Pg Ftss, and 0.12 Pg Frunoff. In contrast to earlier studies that the Pacific and Arctic Oceans are the main recipients of POC flux, we find that the Pacific and Atlantic received more POC flux and received 30.76%–62.51% and 26.77%–53.95%, respectively. This difference may be related to the combined effects of soil erosion, total suspended solids, and runoff. Asia exports more POC than other continents (60.50%–61.69%). The Amazon basin is the major contributor to the Atlantic POC, contributing 53.30%–58.68%. Furthermore, because of the intense human activities and the widespread distribution of many large watersheds in the highly eroded area, it was found that the POC flux has two key zones (25.75–41.5°N and 4.50°N–13.50°S) in the latitude zone. In summary, the above findings increase our understanding of the spatial redistribution of global organic carbon from land to sea.

Around the world in 40 million years: Phylogeny and biogeography of Tecomeae (Bignoniaceae)

Intercontinental disjunct distributions can arise from vicariance, long distance dispersal, or both. Tecomeae (Bignoniaceae) are a nearly cosmopolitan clade of flowering plants providing us with an excellent opportunity to investigate global distribution patterns. While the tribe contains only about 57 species, it has achieved a distribution that is not only pantropical, but also extends into the temperate zones in both the Northern and Southern hemispheres. This distribution is similar to the distribution of its sister group, a clade of about 750 spp. that includes most remaining taxa in Bignoniaceae. To infer temporal and spatial patterns of dispersal, we generated a phylogeny of Tecomeae by gathering sequence data from chloroplast and nuclear markers for 41 taxa. Fossil calibrations were used to determine divergence times, and ancestral states were reconstructed to infer its biogeographic history. We found support for a South American origin and a crown age of the tribe estimated at ca. 40 Ma. Two dispersal events seem to have happened during the Eocene-Oligocene, one from South America to the Old World, and another from South America to North America. Furthermore, two other dispersal events seem to have taken place during the Miocene, one from North America to Asia, and another from Australia to South America. We suggest that intercontinental dispersal via land bridges and island hopping, as well as sweepstakes of long distance dispersal from the Eocene to the present explain the global distribution of Tecomeae.

Comparative genomic analysis reveals metabolic flexibility of Woesearchaeota

The archaeal phylum Woesearchaeota, within the DPANN superphylum, includes phylogenetically diverse microorganisms that inhabit various environments. Their biology is poorly understood due to the lack of cultured isolates. Here, we analyze datasets of Woesearchaeota 16S rRNA gene sequences and metagenome-assembled genomes to infer global distribution patterns, ecological preferences and metabolic capabilities. Phylogenomic analyses indicate that the phylum can be classified into ten subgroups, termed A–J. While a symbiotic lifestyle is predicted for most, some members of subgroup J might be host-independent. The genomes of several Woesearchaeota, including subgroup J, encode putative [FeFe] hydrogenases (known to be important for fermentation in other organisms), suggesting that these archaea might be anaerobic fermentative heterotrophs.

Global patterns of raptor distribution and protected areas optimal selection to reduce the extinction crises

Globally, human-caused environmental impacts, such as habitat loss, have seriously impacted raptor species, with some 50% of species having decreasing populations. We analyzed global patterns of distribution of all 557 raptor species, focusing on richness, endemism, geographic range, conservation status, and population trends. Highest species diversity, endemism, species at risk, or restricted species were concentrated in different regions. Patterns of species distribution greatly differed between nocturnal and diurnal species. To test the efficiency of the global protected areas in conserving raptors, we simulated and compared global reserve systems created with strategies aiming at: 1) constraining the existing system into the final solution; and 2) minimizing the socioeconomic cost of reserve selection. We analyzed three targets of species distribution to be protected (10, 20, 30%). The first strategy was more efficient in meeting targets and less efficient in cost and compactness of reserves. Focusing on actions in the existing protected areas is fundamental to consolidate conservation, and politically and economically more viable than creating new reserves. However, creating new reserves is essential to protect more populations throughout the species' geographic range. Our findings provide a fundamental understanding of reserves to maintain raptor diversity and reduce the global population and species extinction crisis.