A study of flightlessness in the Galápagos cormorant (Compsohalieus [Nannopterum] harrisi) was undertaken using study skins and skeletons of C. harrisi and eight flighted confamilials; in addition, four skin specimens and disassociated skeletal elements of the extinct spectacled cormorant (C. perspicillatus) of Beringia, reputed by some to have been flightless, were studied. Anatomical specimens of C. penicillatus and C. harrisi were dissected for myological comparisons. Flightless C. harrisi is 1.6 to 2.2 times as heavy as its extant flighted congeners; males averaged 3958 g and females averaged 2715 g in total body weight. Estimates of body weight for C. perspicillatus based on femur length approximated 3900 g. Wing lengths of C. harrisi were smaller than those of any other cormorant, averaging 190 mm and 170 mm for males and females, respectively. Wing-loadings (g body mass.cm−2 wing area) of flighted cormorants ranged from 1.0 to 1.7. Estimated wing-loadings, incorporating approximate wing areas, were 2.0 and 5.1 g.cm−2 for C. perspicillatus and C. harrisi, respectively; the former suggests that C. perspicillatus was probably capable of laboured flight. The small wings of C. harrisi result from an c. 50% shortening of remiges, accompanied by reduced asymmetry of vane widths and increased rounding of the tips, and significant reductions in lengths of wing bones, particularly the radius and ulna. Numbers of primary and secondary remiges in C. harrisi remain unchanged. Multivariate morphometries revealed that sexual dimorphism in external and skeletal dimensions is significantly greater in C. harrisi than in flighted cormorants. Canonical analysis of six external measurements indicated that C. harrisi is distinguished primarily by its relatively short wings. Skeletal peculiarities of C. harrisi were diverse, including conformational changes in the sternum, furcula, coracoid, humerus, ulna, radius, carpometacarpus and patella. Mensural comparisons confirmed substantial reductions in elements of the pectoral girdle of C. harrisi, particularly the sternal carina, as well as the alar skeleton, especially the radius and ulna. Differential shortening of the wing elements resulted in significant differences in proportions within the wing skeleton. These unique skeletal proportions of C. harrisi, in addition to its great overall size, combine to produce an immense multivariate skeletal distance between C. harrisi and all confamilials. Sexual dimorphism in skeletal dimensions, in both total and size-corrected data, was 2-3 times greater in C. harrisi than in other phalacrocoracids sampled. Most pectoral muscles of C. harrisi were absolutely or relatively smaller than those of C. penicillatus, in spite of its larger body size. No muscles or parts thereof were lacking in the pectoral limb of C. harrisi, but a number of qualitative differences distinguished the musculature of the flightless species, including: an exceptionally tough skin involving a well-developed M. pectoralis pars abdominalis and M. latissimus dorsi interscapularis; a thin, medially obsolete and laterally extensive M. pectoralis pars thoracica; a weakly developed M. rhomboideus profundus consisting of a variably tendinous fascia invested with three fasciculi of muscle fibres; an extraordinarily thick, extensive M. obliquus externus abdominis, which, together with a unique cnemio-costal slip of smooth muscle, restricts the metapatagium through an anchoring of M. serratus superficialis metapatagialis; and the presence of a unique alular muscle named here as M. levator alulae. Fusions of the tendons of origin and insertion, respectively, of M. flexor digiti superficialis and M. flexor digiti profundus in C. harrisi, muscles derived from a common muscle primordium, and the retention of a carpometacarpal tendon of M. flexor carpi ulnaris cranialis constitute strong evidence of pectoral paedomorphosis in C. harrisi. Mensural comparisons quantified the reduction of pectoral muscles in C. harrisi and indicated that these reductions were especially pronounced in the distal musculature. Morphological characteristics of Phalacrocoracidae, together with the exploitation of localized marine food resources and weakly developed seasonal movements of Compsohalieus, may have predisposed the founding population of C. harrisi to flightlessness. Anatomical changes in C. harrisi are exceeded in degree among foot-propelled diving birds by those of only a few fossil flightless birds (e.g. Hesperomis, Chendytes). Many of the morphological peculiarities of C. harrisi are paedomorphic, although several are not attributable to developmental heterochrony. These morphological characters of flightless C. harrisi are considered with respect to locomotion, feeding ecology, reproduction and demography of the species, and are compared with those of other flightless carinates.
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