Reservoir carbon cycling is a critical component of the global carbon cycle, particularly in subtropical canyon-shaped reservoirs where unique geomorphological features and hydrological regulation under monsoon climate provide a distinct perspective for carbon cycle research. This study takes the Zipingpu Reservoir (ZPPR) in southwestern China as an example and reveals significant seasonal variations in partial pressure of carbon dioxide (pCO2) and carbon dioxide flux at the water-air interface (FCO2) through annual monitoring. The average pCO2 in ZPPR is 486 μatm, and the average FCO2 is 0.093 g C m-2d-1, with approximately 42.4 % of FCO2 measurements being negative, indicating the reservoir's role can act as a carbon sink. The study also estimated the gas transfer coefficient (K), with an average value of 1.888 md-1. Peak FCO2 during spring and summer is three times higher than in other seasons, consistent with the main influencing factors of inflow dynamics, metabolic processes, and reservoir operation strategies. Inflow and operational activities, particularly during spring and summer, drive CO2 emissions in the downstream reach and upstream tributary, while biological activity facilitates CO2 uptake in the lacustrine area and forebay tributary, with enhanced absorption occurring in the autumn. Concurrently, high-intensity FCO2 emissions from the upstream river section during summer underscore the importance of carbon emission monitoring and management during critical periods. The findings not only enhance the understanding of FCO2 assessment accuracy but also provide a framework for evaluating and optimizing carbon dynamics management strategies in canyon-shaped reservoirs, contributing valuable insights to global carbon cycle research.