Genotypic Differences Research Articles

Identification of genetic susceptibility for Chinese migraine with depression using machine learning.

Migraine is a common primary headache that has a significant impact on patients' quality of life. The co-occurrence of migraine and depression is frequent, resulting in more complex symptoms and a poorer prognosis. The evidence suggests that depression and migraine comorbidity share a polygenic genetic background. The aim of this study is to identify related genetic variants that contribute to genetic susceptibility to migraine with and without depression in a Chinese cohort. In this case-control study, 263 individuals with migraines and 223 race-matched controls were included. Eight genetic polymorphism loci selected from the GWAS were genotyped using Sequenom's MALDI-TOF iPLEX platform. In univariate analysis, ANKDD1B rs904743 showed significant differences in genotype and allele distribution between migraineurs and controls. Furthermore, a machine learning approach was used to perform multivariate analysis. The results of the Random Forest algorithm indicated that ANKDD1B rs904743 was a significant risk factor for migraine susceptibility in China. Additionally, subgroup analysis by the Boruta algorithm showed a significant association between this SNP and migraine comorbid depression. Migraineurs with depression have been observed to have worse scores on the Beck Anxiety Inventory (BAI) and the Migraine Disability Assessment Scale (MIDAS). The study indicates that there is an association between ANKDD1B rs904743 and susceptibility to migraine with and without depression in Chinese patients.

Effects of drought on photosynthetic induction in leaves of different wheat genotypes under dark-to-light transition

Adjustment of photosynthetic processes to an increase in irradiance constrains the CO2 assimilation and photosynthetic carbon gain compared to that which would be obtained if photosynthesis reached its terminal value instantaneously. Acceleration of photosynthesis induction under field conditions of fluctuating light opens up new perspectives for increasing yields. However, there is little information on response of photosynthetic processes to changes in the light under drought conditions. In a pot experiment, we have studied the peculiarities of response of CO2- and H2O-gas exchange parameters in flag leaves of 3 winter wheat genotypes to a transition from dark to bright light under drought conditions, to reveal the features of drought effect on photosynthetic induction processes. The plants were exposed to a 7-day drought (30% FC) during the flowering stage. After that, the watering of the treated plants was restored to the control level (70% FC), which was maintained until the end of the growing season. Induction curves of CO2 assimilation and transpiration of the flag leaves were recorded after keeping them in the darkness for 30 minutes, then the light was turned on. It was revealed that drought impacts the photosynthetic apparatus by reducing its maximum functional intensity as well as by diminishing its ability to respond to changing light conditions. Specifically, drought slows the rate of gas exchange increase during transitions from dark to light. High-yielding wheat genotypes, which had higher assimilation rates and stomatal conductance under optimal watering, showed increased sensitivity to drought. The reduction in the CO2 assimilation rate in wheat leaves under drought was primarily due to damage to the photosynthetic apparatus in mesophyll cells, rather than inhibition of stomatal conductance. This conclusion is supported by Ci value calculations, which were highest at the lowest CO2 assimilation rate at the beginning of light exposure and lowest at the highest CO2 assimilation rate when reaching a steady-state plateau. The stronger impact of the drought on the biochemical components of the photosynthetic apparatus than on stomata is also suggested by a decrease in instantaneous water use efficiency (WUEi) during photosynthesis. The genotypic differences in the effects of drought on the dynamics of photosynthetic induction parameters during dark-to-light transitions in wheat leaves suggest the potential of these traits for evaluating breeding material. This could enhance the ecological plasticity of new wheat varieties.

Sex Differences in the Effect of Brain-derived Neurotrophic Factor (BDNF) Val66Met Polymorphism on Baseline EEG Connectivity

Dependent on Val66Met polymorphism in BDNF gene secretion of neurotrophin affects morphological and functional changes in the developing and mature nervous system, in particular, may contribute to associated with white matter degradation changes in connectivity observed with aging. It was also shown that the associated with Val66Met polymorphism differences in connectivity between cortical structures are moderated by the sex of the subjects. However, there are no studies examining the effect of polymorphism on connectivity, taking into account age and gender differences. In this regard, the present study examined the associations of the Val66Met polymorphism of the BDNF gene with the characteristics of delayed phase synchronization based on EEG data in 223 younger (from 18 to 35 years old) and 134 older (over 55 years old) men and women. The analysis included connections between 84 cortical areas, identified on the basis of 42 Brodmann areas located in the left and right hemispheres. A statistically significant effect, including the factor of polymorphism, was the SEX × GENOTYPE interaction when considering associations at the frequency of the α1-rhythm: in Val/Met men, the strength of thirty-three connections was higher compared to Val/Val. Strengthening of connections was observed mainly between the parahippocampal regions of different hemispheres. At the frequency of the gamma rhythm, associated with the genotype differences in connectivity depended on gender and age. In young subjects, the scores of connectivity in Val/Val women were lower in comparison with men, however, no differences between Val/Val and Met carriers were found in any age group. The combined effect of sex and BDNF genotype on the baseline EEG parameters of brain connectivity may be a background for further study of the role of these factors in the formation of basic characteristics of brain activity.

Multiple karyotype differences between populations of the Hoplias malabaricus (Teleostei; Characiformes), a species complex in the gray area of the speciation process.

Neotropical fishes exhibit remarkable karyotype diversity, whose evolution is poorly understood. Here, we studied genetic differences in 60 individuals, from 11 localities of one species, the wolf fish Hoplias malabaricus, from populations that include six different "karyomorphs". These differ in Y-X chromosome differentiation, and, in several cases, by fusions with autosomes that have resulted in multiple sex chromosomes. Other differences are also observed in diploid chromosome numbers and morphologies. In an attempt to start understanding how this diversity was generated, we analyzed within- and between-population differences in a genome-wide sequence data set. We detect clear genotype differences between karyomorphs. Even in sympatry, samples with different karyomorphs differ more in sequence than samples from allopatric populations of the same karyomorph, suggesting that they represent populations that are to some degree reproductively isolated. However, sequence divergence between populations with different karyomorphs is remarkably low, suggesting that chromosome rearrangements may have evolved during a brief evolutionary time. We suggest that the karyotypic differences probably evolved in allopatry, in small populations that would have allowed rapid fixation of rearrangements, and that they became sympatric after their differentiation. Further studies are needed to test whether the karyotype differences contribute to reproductive isolation detected between some H. malabaricus karyomorphs.

Multiparametric Assays Capture Sex- and Environment-Dependent Modifiers of Behavioral Phenotypes in Autism Mouse Models

BackgroundCurrent phenotyping approaches for murine autism models often focus on one selected behavioral feature, making the translation onto a spectrum of autistic characteristics in humans challenging. Furthermore, sex and environmental factors are rarely considered. Here, we aimed to capture the full spectrum of behavioral manifestations in 3 autism mouse models to develop a “behavioral fingerprint” that takes environmental and sex influences under consideration. MethodsTo this end, we employed a wide range of classical standardized behavioral tests and 2 multiparametric behavioral assays—the Live Mouse Tracker and Motion Sequencing—on male and female Shank2, Tsc1, and Purkinje cell–specific Tsc1 mutant mice raised in standard or enriched environments. Our aim was to integrate our high dimensional data into one single platform to classify differences in all experimental groups along dimensions with maximum discriminative power. ResultsMultiparametric behavioral assays enabled a more accurate classification of experimental groups than classical tests, and dimensionality reduction analysis demonstrated significant additional gains in classification accuracy, highlighting the presence of sex, environmental, and genotype differences in our experimental groups. ConclusionsTogether, our results provide a complete phenotypic description of all tested groups, suggesting that multiparametric assays can capture the entire spectrum of the heterogeneous phenotype in autism mouse models.

Extraction of Oil from Different Cultivars of Olive Fruits and Their Profiling by Gas Chromatography

Olive varieties differ from each other in terms of their morphological attributes, such as leaf size and shape, fruit size, color, texture and shape. These differences arise as a result of combination of different genotypic composition as the variable environmental conditions. The genotypic and phenotypic differences arising in plants are further translated to the level of the fruits, as a consequence of which, olive fruits from different cultivars yield different kinds of olive oils. The current study shows variable oil parameters of olive oil harvested from four different cultivars of oils, namely, [Arbequina (A), Barnea (B), Cortina (C), Koronoiki (K)] which were collected from two different sites, Napasar (N) and Lunkaransar (L), Bikaner (Rajasthan) and furthermore evaluate the variation in oil parameters (oil content as well as fatty acids present in oils) of different olive cultivars. The results of the study show that oil from all the varieties differed from each other in terms of colour as well as fatty acid profile. All these variations were attributed to the difference in genotype of different olive cultivars as well as variable metrological conditions coupled with different physico-chemical attributes of water and soil in both Napsar and Lunkaransar.

Stability and genetic parameters for cassava yield attributes in the tropical humid region of Brazil

The performance differences in cassava genotypes arising from genotype vs. environment interactions (G × E) often lead to responses that are significantly lower than expected for selection. The objective of this study was to evaluate different stability methods, both parametric and non-parametric, such as additive main-effects and multiplicative interaction (AMMI), main effect of genotypes plus G × E (GGE), and weighted average of absolute scores (WAASB), in order to quantify the G × E in multi-environmental trials. A total of 12 genotypes were assessed across 12 environments using a completely randomized block design, with three replicates for traits such as fresh root yield (FRY) and dry matter content in the roots (DMC). The data were subjected to analysis of variance and the Scott Knott test (p < 0.05). The sum of squares (SQ) of genotypes, environment, and G × E effects were equally distributed for FRY, whereas for DMC, these effects accounted for 64.1%, 21.9%, and 13.8% of the SQ, respectively, indicating a lower environmental effect on this characteristic. Using the AMMI, GGE, and WAASB methods, genotypes with high agronomic performance and stability for FRY (BR11-34–41 and BR11-34–69) (> 32 t ha−1) and DMC (BRS Novo Horizonte, BR12-107–002, and BR11-24–156) (> 37%) were identified. The broad-sense heritability (h2\\documentclass[12pt]{minimal} \\usepackage{amsmath} \\usepackage{wasysym} \\usepackage{amsfonts} \\usepackage{amssymb} \\usepackage{amsbsy} \\usepackage{mathrsfs} \\usepackage{upgreek} \\setlength{\\oddsidemargin}{-69pt} \\begin{document}$${h}^{2}$$\\end{document}) for FRY and DMC was estimated to be 0.45 and 0.75, respectively. Approximately 72% of the methods identified BRS Novo Horizonte as the genotype with the highest stability and performance for DMC, while 47% identified genotypes BR11-34–41 and BR11-34–69 for FRY and intermediate DMC. Genotype BR11-24–156 exhibited high static stability according to 50% of the methods. Significant correlations were observed between stability and agronomic performance across the different methods, enabling the formation of groups based on stability concepts. Additionally, it was found that two mega-environments existed for FRY, whereas DMC displayed a single mega-environment with similar patterns, indicating an absence of G × E. We identified superior genotypes that could be promoted to national performance trials to develop stable cultivars with better yield attributes in cassava.

Associations of TRAF2 (rs867186), TAB2 (rs237025), IKBKB (rs13278372) Polymorphisms and TRAF2, TAB2, IKBKB Protein Levels with Clinical and Morphological Features of Pituitary Adenomas.

The aim of this study was to determine associations of TRAF2 (rs867186), TAB2 (rs237025), IKBKB (rs13278372) gene polymorphisms and TRAF2, TAB2, IKBKB protein levels with clinical and morphological features of pituitary adenomas (PAs). This case-control study included 459 individuals divided into two groups: a control group (n = 320) and a group of individuals with PAs (n = 139). DNA from peripheral blood leukocytes was isolated using salt precipitation and column method. Real-time PCR was used for TRAF2 (rs867186), TAB2 (rs237025), and IKBKB (rs13278372) SNP genotyping, and TRAF2, TAB2, IKBKB protein concentration measurements were performed by immunoenzymatic analysis tests using a commercial ELISA kit according to the manufacturer's recommendations. The labeling index Ki-67 was determined by immunohistochemical analysis using a monoclonal antibody (clone SP6; Spring Bioscience Corporation). Statistical data analysis was performed using the programs "IMB SPSS Statistics 29.0". We found significant differences in TRAF2 (rs867186) genotypes (AA, AG, GG) between groups: 79.1%, 17.3%, 3.6% vs. 55.3%, 20.9%, 23.8% (p < 0.001). The G allele was less frequent in the PA group than in controls (12.2% vs. 34.2%, p < 0.001). The AG and GG genotypes reduced PA occurrence by 1.74-fold and 9.43-fold, respectively, compared to AA (p < 0.001). In the dominant model, GG and AG genotypes reduced PA odds by 3.07-fold, while in the recessive model, the GG genotype reduced PA odds by 8.33-fold (p < 0.001). Each G allele decreased PA odds by 2.49-fold in the additive model (p < 0.001). Microadenomas had significant genotype differences compared to controls: 81.3%, 18.8%, 0.0% vs. 55.3%, 20.9%, 23.8% (p < 0.001), with the G allele being less frequent (9.4% vs. 34.2%, p < 0.001). In macroadenomas, genotype differences were 78%, 16.5%, 5.5% vs. 55.3%, 20.9%, 23.8% (p < 0.001), and the G allele was less common (13.7% vs. 34.2%, p < 0.001). The dominant model showed that GG and AG genotypes reduced microadenoma odds by 3.5-fold (p = 0.001), and each G allele reduced microadenoma odds by 3.1-fold (p < 0.001). For macroadenomas, the GG genotype reduced odds by 6.1-fold in the codominant model (p < 0.001) and by 2.9-fold in GG and AG genotypes combined compared to AA (p < 0.001). The recessive model indicated the GG genotype reduced macroadenoma odds by 5.3-fold (p < 0.001), and each G allele reduced odds by 2.2-fold in the additive model (p < 0.001). The TRAF2 (rs867186) G allele and GG genotype are significantly associated with reduced odds of pituitary adenomas, including both microadenomas and macroadenomas, compared to the AA genotype. These findings suggest a protective role of the G allele against the occurrence of these tumors.

Evaluation of early maturing sugarcane (Saccharum spp. complex) clones for sugar yield and its contributing traits and stability

Sugarcane cultivation is targeted with early varieties having stable higher CCS (commercial cane sugar) yield potential. Therefore, studies were made on 18 traits over three years (2016-19) with seven genotypes at Regional Research Station, PAU, Faridkot. Different multivariate statistical techniques were used for assessing the potential of CCS contributing traits and clonal stability. The observed significant differences due to varieties, years and their interactions were self explaining the role of genotypic differences and weather factors. Cane yield t/ha (CY), CCS t/ha (CCS.T) and their contributing traits were positively loaded on different axes in principal component analyses (PCA). Single cane weight (SCW) was observed to be the primary contributing trait for CY; while brix % and sucrose % for CCS %, and CY for CCS.T were the major contributing traits. CoPb 13181 was observed the most suitable clone for the region. Further, Eberhart &amp; Russell’s model was found more appropriate for judging the genotype(s) to environment specificity while “GGE Biplot” was best to evaluate the environments for their discriminating power to genotypes.

Adoption of satellite behavior by small male green treefrogs, Dryophytes cinereus, is not associated with age: Implications for the maintenance of alternative behavioral phenotypes

AbstractBody size is often a critical determinant of competitive ability and reproductive behavior. For example, small males characteristically lose contests with larger males and may be metabolically constrained from sustaining energetically demanding reproductive behaviors. Small males thus often utilize alternative reproductive tactics (ARTs) to maximize their reproductive success. How variation in body size among behavioral phenotypes arises can provide important insight into the maintenance of ARTs. For instance, smaller body sizes for males adopting ARTs may simply be a function of age, suggesting that the tactic is maintained by the periodic recruitment of young males into the population. Alternatively, body size differences among behavioral phenotypes that are unrelated to age suggest disparate growth rates that potentially arise as a consequence of variation in environmental conditions during development or genotypic differences between the phenotypes. Here we examine these alternative scenarios in the green treefrog, Dryophytes cinereus, using skeletochronological analysis combined with body size measures. As with many other anuran amphibians, male green treefrogs conditionally adopt a noncalling satellite mating tactic and attempt to intercept females attracted to the vocalizations of calling “host” males. We show that males adopting satellite behavior in natural choruses are smaller than calling males but do not represent a class of younger individuals, indicating that satellite males have lower growth rates than calling males. We also show that satellite males are in poorer condition than larger calling males, implicating energetic constraints in size‐related variation in mating tactic expression. Our work suggests that environmental conditions during development, genetic differences between phenotypes, or both, give rise to size discrepancies in behavioral phenotypes, neither of which have been previously explored in anurans. We discuss body size and condition differences between behavioral phenotypes in the context of energetic constraints and endocrine mediation of tactic expression in this species.

NLRP3 (rs10754558) gene polymorphism and tumor necrosis factor alpha as predictors for disease activity and response to methotrexate and adalimumab in psoriasis

BackgroundPsoriasis has a global prevalence of 1–3%, with variations observed across different ethnic groups and geographical areas. Disease susceptibility and response to anti-tumor necrosis factor-α (TNFα) drugs suggest different genetic regulatory mechanisms which may include NLR family pyrin domain containing 3 (NLRP3) polymorphism. Evaluation of the NLRP3 gene polymorphism, the serum level of CRP and TNFα in psoriasis patients and assessment of the NLRP3 (rs10754558) gene polymorphism, CRP and TNFα with disease severity and their role as biomarkers for response to Methotrexate and Adalimumab in psoriasis. The study had a total of 75 patients diagnosed with psoriasis vulgaris, who were compared to a control group of 75 healthy individuals.ResultsThere was a highly significant difference in NLRP3 genotypes and alleles distribution between psoriasis patients and controls (P = 0.002,0.004). The heterozygote genotype GC (OR = 3.67,95%CI:1.75–7.68, P = 0.0006), was linked with increased risk of psoriasis. Additionally, The GC genotype was significantly associated with nonresponse to psoriasis therapy (OR = 11.7,95%CI:3.24–42.28, P = 0.0002). Regarding serum CRP and TNFα levels, there was a highly statistically significant difference between psoriasis patients and controls (P < 0.0001), and there was also a highly statistically significant difference between responders and non-responders in psoriasis patients regarding PASI 50 (P < 0.0001).ConclusionsThe NLRP3 (rs10754558) genotypes GC was associated with the severe form of psoriasis and with nonresponse to psoriasis medication. Therefore, NLRP3 (rs10754558) gene polymorphism is an important prognostic biomarker in psoriasis patients. The serum TNFα can be used as a predictor for response to therapy in psoriasis patients. More research for evaluation of role of the NLRP3 gene polymorphism in the genetic risks and treatment outcomes associated with psoriasis is still required.

The Association between Obesity Susceptibility and Polymorphisms of MC4R, SH2B1, and NEGR1 in Tibetans.

Background: A high-altitude environment has inhibitory effects on obesity. Tibetans are not a high-risk population for obesity, but there are still obese individuals within that population. Obesity has become a worldwide health problem, and previous studies have found that obesity is closely associated with hereditary factors. Few studies have investigated obesity in Tibetans, and the association between gene polymorphisms and obesity in Tibetans remains unclear. Methods: Our study investigated the fat mass of 140 native Tibetan individuals (70 men and 70 women) from Lhasa and analyzed the associations between polymorphisms of melanocortin 4 receptor (MC4R), Src homology 2B adapter protein 1 (SH2B1), and neuronal growth regulator 1 (NEGR1) and obesity. Result: Among Tibetan individuals, there were differences in genotype and allele frequencies between those in the obesity group and those in the healthy group at MC4R (rs17782313) and SH2B1 (rs7359397). The polymorphisms of MC4R (rs17782313) were associated with fat mass and obesity in Tibetan men and women, and there was an association between SH2B1 (rs7359397) polymorphisms and fat mass and obesity in Tibetan men. However, polymorphisms of NEGR1 (rs3101336) were not associated with fat mass or obesity in Tibetan individuals. Conclusion: Among Tibetan individuals, polymorphisms of MC4R (rs17782313) and SH2B1 (rs7359397) were associated with obesity, but NEGR1 (rs3101336) polymorphisms were not associated with obesity.

Polymorphism of angiogenesis regulation factor genes (VEGF/VEGFR), and extracellular matrix remodeling genes (MMP/TIMP), and the levels of their products in extracellular tissues of patients with primary and secondary lymphedema.

Cells of various organs and systems perform their functions and intercellular interactions not in an inert environment, but in the microenvironment of tissue fluids. Violations of the normal drainage of tissue fluids accompany lymphedema. An important mechanism of angiogenesis and vasculogenesis regulation in tissue fluids is the production and reception of vascular endothelial growth factors in combination with the regulation of matrix metalloproteinases. The aim of the work was to perform: a comparative analysis of some polymorphisms of vascular endothelial growth factor and their receptors and the genes encoding matrix metalloproteinases in two forms of lymphedema; an analysis of the relationship of these genes' polymorphisms with the levels of vascular endothelial growth factor and matrix metalloproteinases and their inhibitors in serum and affected tissues. Polymorphism of VEGF (rs699947, rs3025039), KDR (rs10020464, rs11133360), NRP2 (rs849530, rs849563, rs16837641), matrix metalloproteinases MMP2 (rs2438650), MMP3 (rs3025058), MMP9 (rs3918242), Timp1 (rs6609533) and their combinations were analyzed by the Restriction Fragment Length Polymorphism method and TaqMan RT-PCR. The serum and tissue fluid levels were determined using the ELISA test system. Changes in the frequency distribution of MMP2 genotypes in primary and MMP3 in secondary lymphedema are shown. Significant frequency differences in NRP2 genotypes were revealed by comparing primary and secondary lymphedema. Features of the distribution of complex genotypes in primary and secondary lymphedema were revealed. The correlation analysis revealed the interdependence of the concentrations of the MMP, TIMP and VEGF products and differences in the structure of the correlation matrices of patients with both forms of lymphedema. It was shown that, in primary lymphedema, genotypes associated with low MMP2 and TIMP2 in serum and tissue fluid are detected, while in secondary lymphedema, other associations of the production levels with combined genetic traits are observed.

The clinical spectrum associated with ERCC5 mutations: Is there a relationship between phenotype and genotype?

AbstractMutations in the ERCC5 gene can lead to different clinical phenotypes, few articles have reported the clinical phenotypes in detail and explained the relationship between genotype and phenotype. The clinical data of cases with ERCC5 gene mutations diagnosed in our center and reported in previous studies were collected. The cases were divided into three groups based on phenotype; the differences of clinical manifestation and genotype among groups were analyzed. Genetic tests showed a complex heterozygous mutation of the ERCC5 gene with paternal C.402_C.403 (exon 4) insA (p.T135Nfs*28) and maternal C.1096 (exon 8) C &gt; T (p.R366X.821) in our case. The gene mutation has not been reported and was predicted to seriously affect the protein structure. According to a review of 59 cases of ERCC5 mutations, cerebrooculofacioskeletal syndrome (COFS) occurred in 16 cases, XP in 19 cases, and XP/CS in 24 cases. The incidence of physical retardation, mental retardation, peripheral neuropathy, magnetic resonance abnormalities and fundus/vision abnormalities in XP/CS patients was significantly higher than that in XP patients. In addition, patients with the XP/CS phenotype were more prone to appearance abnormalities, deafness, and epilepsy, and cheilitis and tumors were more common in patients with the XP phenotype, but the differences were not significant. XP/CS can cause abnormal liver function and even fatality, which should be given attention. ERCC5 mutation‐related diseases were characterized by mild to severe clinical phenotypes. In addition to tumors, liver function should be considered in ERCC5‐related diseases, and patients should be cautious with medication to avoid drug‐induced liver injury.

High-risk HPV Prevalence Estimates among Older Patients: Implications for Cervical Cancer Screening Programs.

Due to the heterogeneity of existing studies and wide range of human papilloma virus (HPV) prevalence in India, further research into the incidence of HR-HPV and its spectrum of genotypes is essential to develop screening policies. This study aimed to determine the incidence and demographic distribution of HR-HPV among cisgender female patients attending a tertiary care facility in North India. This study was conducted in the Department of Obstetrics and Gynaecology, SGRR Institute of Medical and Health Sciences, Dehradun, India. HPV-DNA test results of 653 female patients were assessed for HR-HPV positivity, genotyping, and age-based differences via Chi-square analysis. Overall prevalence of HR-HPV was 4.90%, HPV-16 was 1.37%, HPV-18 was 0.76%, and HPV non-16,18 was 2.7%. In patients ≤ 50 years, prevalence of HPV-16 was 0.97%, HPV-18 was 0.38%, and HR-HPV non-16,18 was 2.71%. In patients > 50 years, prevalence of HPV-16 was 2.89%, HPV-18 was 2.17%, and HR-HPV non-16,18 was 2.89%. The difference in the prevalence of HPV-16,18 between patients ≤ and > 50 years was found to be highly statistically significant (P = 0.007485). The difference in the prevalence of total HR-HPV between patients ≤ and > 50 years was not found to be statistically significant (P = 0.059905). Our study's finding of higher HR-HPV positivity rates in patients > 50 years emphasizes the need for continued HR-HPV-DNA-based screening of this cohort. With widespread use in post-menopausal patients, HPV screening can serve as an important armamentarium in the fight against cervical cancer.

Detection of single-nucleotide polymorphisms in growth hormone and insulin-like growth factor-1 genes related to growth traits in purebred and crossbred quails.

There is a limited amount of research conducted on quail breeding domestically and internationally, particularly at the molecular level. This study aimed to detect single-nucleotide polymorphisms in the growth hormone (GH) and insulin-like growth factor-1 (IGF-1) genes across two quail varieties and their hybrids correlate these genetic factors with body weight (BW) and growth rate at 0 and 6 weeks, and assess crossing effects. White and Japanese quail were crossed. Simultaneously producing pure varieties and crosses (genotypes) was achieved through this breeding strategy. Fifty females from each genotype were randomly selected for blood sampling. Genomic DNA was extracted and amplified from the blood using the DNeasy blood kit (Qiagen, Germany). Nucleotide polymorphism between quail genotypes was determined through DNA sequencing. Two types of alleles (A and B) for the GH gene in quails showed significant genotypic differences (AA, BB, and AB). The quail carried a mutated IGF-1 gene. For growth traits, substantial positive heterosis was detected. The genotype AA had the highest BW and weight gain. The white variety can act as a sire, and both white and Japanese varieties can function as dams to improve growth traits. The growth characteristics of the hybrids surpassed those of the original varieties.

Differences in ACTN3 Genotype in Professional Ssireum Players Between Weight Classes and Elite/Non-Elite Status

PURPOSE This study aimed to identify ACTN3 gene polymorphisms amongprofessional ssireum players by weight class and between elite and non-elite players,and to select genotype that matches the characteristics of the sport. METHODS The subjects of this study were 148 male athletes currently working as professionalssireum players. Chi-square test cross-tabulation analysis was conducted to examinethe differences in ACTN3 genotypes between weight classes and between elite andnon-elite players. RESULTS There were no significant differences in allele or genotypebetween ssireum players, but there were significant differences in R-allele and XXgenotype. CONCLUSIONS Players with the R-allele type of the ACTN3 gene weremore often classified as elite. Using this marker as a basis for organizing a playerselection and training programs would be more effective in training those that matchthe characteristics of elite players of the game.

Mapping the impact of age and APOE risk factors for late onset Alzheimer's disease on long range brain connections through multiscale bundle analysis.

Alzheimer's disease currently has no cure and is usually detected too late for interventions to be effective. In this study we have focused on cognitively normal subjects to study the impact of risk factors on their long-range brain connections. To detect vulnerable connections, we devised a multiscale, hierarchical method for spatial clustering of the whole brain tractogram and examined the impact of age and APOE allelic variation on cognitive abilities and bundle properties including texture e.g., mean fractional anisotropy, variability, and geometric properties including streamline length, volume, and shape, as well as asymmetry. We found that the third level subdivision in the bundle hierarchy provided the most sensitive ability to detect age and genotype differences associated with risk factors. Our results indicate that frontal bundles were a major age predictor, while the occipital cortex and cerebellar connections were important risk predictors that were heavily genotype dependent, and showed accelerated decline in fractional anisotropy, shape similarity, and increased asymmetry. Cognitive metrics related to olfactory memory were mapped to bundles, providing possible early markers of neurodegeneration. In addition, physiological metrics such as diastolic blood pressure were associated with changes in white matter tracts. Our novel method for a data driven analysis of sensitive changes in tractography may differentiate populations at risk for AD and isolate specific vulnerable networks.

Genotypic differences in soybean (Glycine max L.) in yield response to phosphorus fertilizer are associated with difference in biomass and phosphorus content

The soybean seed yield response to phosphorus (P) fertilizer has significantly increased during soybean breeding but the underlying mechanisms remain elusive. In this study, we used two soybean cultivars with high (Andou 8 (AD8)) and low (Qiandou 5 (QD5)) seed yield response to P fertilizer to compare their yield and yield components, biomass accumulation and partitioning, P content and partitioning and P-use efficiency in Shiqian (SQ) and Dafang (DF) during the growing season in 2020 under 0 (P0) and 35 (P35) kg P ha−1 supply. The results show that AD 8 had a greater seed yield, pod biomass, filled-pod number, seed number, pod P content and P partitioning to pods, and P-use efficiency based on seed yield (PUESY) but lower P-use efficiency based on biomass (PUEB) than QD5 at two experimental sites. The seed number was positively correlated with total biomass and P content, especially with greater pod biomass accumulation and its partition to pods which showed a positive correlation with seed number. Seed number was negatively correlated with stem dry weight and its partitioning to stem, and stem P partition. We conclude (1) different yield response to P fertilizer are explained by different biomass and P content and their partitioning to pod; (2) high biomass and P-conversion efficiency increased the seed number, which accounted for a high yield response to P fertilizer. Our results highlight that soybean breeding increased biomass and nutrient content and their conversion efficiency to achieve high seed yield with P-fertilizer supply.

Генотипни различия в растежната активност на семената от сортове зимен ечемик

At the Institute of Agriculture - Karnobat, Bulgaria, laboratory research was conducted on 5 varieties of two-row and 5 varieties of multi-row winter barley. The aim of the research is to determine the genotypic differences in the initial growth of winter barley varieties. The varieties were studied in a laboratory experiment using the roll method. Number of indicators number of roots (number), length of roots (cm), length of the first leaf (cm) were recorded. 20 seeds of each variety were placed on filter paper in 3 replicates. The rolls are immersed in water and after 10 days the length of the first leaf, the number of roots and their length are counted. The results of the analysis show that Zahir and Alexan varieties form the largest number of roots. The Lardeya and Bozhin varieties form the smallest number of roots. The Kuber and Siela varieties have the longest root length and the first leaf. The varieties Zahir and Achinora have the smallest root length, and Lardea and Zemela have the smallest length of the first leaf. To improve the length of the first leaf, good combinations are expected when crossing the varieties Daria, Bozhin with Alexan, Achinora. Siela, Zemela, Alexan and Achinora varieties are genetically the most distant from Lardea, Kuber and Zahir in terms of length and number of roots. It is recommended to use them for crosses in order to create a better root system.