Genetic Relationships Research Articles

Protective effects of Marinobacter nauticus strain GH3 exopolysaccharide on the Oreochromis niloticus model for Alzheimer’s disease

AbstractMarinobacter nauticus strain GH3 was isolated from the Red Sea, Sharm Elshiekh, and classified according to cultural attributes, biochemical properties, and the analysis of genetic relationships using 16 S rRNA sequences. A substantial proportion of exopolysaccharides (EPS) in GH3-EPS contained a sulfate content of 25.4%, uronic acid (12.18%), and N-acetylglucosamine (13.6%). The composition of monosaccharides in this fraction consists of glucose, glucoronic acid, arabinose, and xylose by 2:4:3:3, respectively. SEM showed a flower-like shape with white bundles on the GH3-EPS surface. GH3-EPS enhancement of the RAW264.7 macrophage line RAW 264.7 ATTC number J774 cell proliferation via MTT assay for cell viability. GH3-EPS had a high stimulation effect on releasing TNF-alpha and IL-10. Followed by its effect against cyclooxygenase (COX-2) and lipoxygenase (LOX), with IC50s of 14.74 and 19.4 µg/ml, respectively. Antioxidant activity was evaluated for GPx-4, GSS, and MDA with highly significant results, and for DPPH, ABTS, and iron chelating with IC50 (43.51, 31.27, and 84.96 µg/ml, respectively). AChE was inhibited by a mean of 52.92 ± 4.54 and 68.22 ± 5.64 µg/ml. In a fish animal model, GH3-EPS demonstrated a positive treatment effect for AD, supporting biochemical studies, histopathology for some brain parts, and toxicity.

Genetic relationship between Kaili and Pamona languages: a historical comparative linguistics study

Genetic relationship between Kaili and Pamona languages: a historical comparative linguistics study

A new species of Fissidentalium (Scaphopoda: Dentaliidae) in association with an actinostolid anemone from the abyssal Labrador Sea

The benthic biodiversity of the abyssal Labrador Sea was investigated using Agassiz trawl and in situ imagery. A megafaunal scaphopod associated with an epizoic anemone was recovered from soft sediments. Morphological and molecular investigations revealed the scaphopod to be an undescribed species in the dentaliid genus Fissidentalium P. Fischer, 1885. The new scaphopod species is characterised by a large size for the genus, is moderately curved, with numerous narrow, longitudinal ribs (60 ribs at 11 mm diameter ventral aperture), a dentaliid radula, and is described herein as Fissidentalium aurae sp. nov. The new species shows a close genetic relationship to congeners of Fissidentalium and separates from the sister genera Dentalium Linnaeus, 1758 and Antalis H. Adams & A. Adams, 1854. Genetic COI barcoding of the epizoic anemone suggests the species is a member of the family Actinostolidae Carlgren, 1932. The discovered association of a burrowing scaphopod with an epifaunal anemone at abyssal depth is a new record for the region and is indicative of how little is known about symbioses in the deep sea.

Phylogenetic and population genetic analysis of Arunachali Yak (Bos grunniens) using mitochondrial DNA D-loop region.

The Arunachali yak (Bos grunniens) is an important breed native to the northeastern Himalayas of India. Understanding its genetic diversity and evolutionary relationships with other bovine species is crucial for effective conservation and breeding strategies. This study investigates the mitochondrial DNA (mtDNA) D-loop region of Arunachali yak and compares it with other bovines to elucidate these relationships. We collected blood samples from 18 Arunachali yak individuals and isolated genomic DNA. The partial mtDNA D-loop region was amplified using PCR and sequenced. Sequences were compared with those from Bos frontalis, Bos gaurus, Bos indicus, Bubalus bubalis, and Capra hircus available in GenBank. Phylogenetic relationships were assessed through Neighbor-Joining trees and median-joining networks. Genetic diversity indices and neutrality tests were applied to evaluate population genetic characteristics. Phylogenetic analysis identified three distinct clades, with Arunachali yak clustering closely with Bos indicus, and forming a separate branch from other bovine species. Median-joining networks revealed six haplogroups, with Arunachali yak uniquely representing Hap_3. Genetic diversity analysis showed no polymorphism within Arunachali yak, indicating very low genetic variation in the selected animal samples. AMOVA demonstrated significant genetic differentiation among populations (Fst = 0.30053, P < 0.001), with a substantial portion of variation occurring within populations. The Arunachali yak exhibits a close genetic relationship with Bos indicus, reflecting recent divergence. The study underscores the distinct genetic profile of Arunachali yak and highlights its limited genetic variability. These findings enhance our understanding of bovine evolutionary relationships and emphasize the need for targeted conservation measures to preserve the genetic integrity of Arunachali yak.

Host and Viral Factors Influencing Chronic Hepatitis B Infection Across Three Generations in a Family.

Chronic hepatitis B (CHB) infection is influenced by both virological and host factors. A total of 5,920 CHB patients were classified into four groups based on HBV seromarkers: three-generation families (CHB grandmother, mother, and child), two-generation families (CHB mother/child pairs), individuals recovered from HBV infection, and a control group. Serological markers, viral load, liver function tests (LFT), HBV mutations, HLA-DQ variations, cytokine polymorphisms, and liver stiffness measurements (LSM) were analyzed using FibroScan. Point mutations in genes such as core/pre-core (G1896A/G1899A), polymerase (H248N, H267Q, N263D), S (G145R, S143L), and X (C1500T, T1464C) were observed in 30% of three-generation pairs and 20% of two-generation pairs. The three-generation group exhibited the highest mean liver stiffness measurement (LSM) (4.94 ± 1.24kPa), which is considered a predictor for the development of hepatocellular carcinoma (HCC). Subsequent HLA allele analysis identified HLA-DQB105:01 (OR = 0.27) as a risk factor for treatment resistance, while HLA-DQB105 (OR = 0.98), HLA-DQB103 (OR = 0.80), and HLA-DQB104:01 (OR = 0.70) were associated with HBV persistence in both three- and two-generation groups. Higher frequencies of specific polymorphisms, including G/G (TNF-α: 75%; IL-18: 74%), A/A (IL-10: 74.28%), and C/C (IL-1ß: 80%), were significantly linked to persistent infection. Analysis of viral sequences, HLA-DQB1 variations, cytokine polymorphisms, and genetic relationships within the phylogenetic tree revealed that 40% of CHB patients from three-generation families were infected by a shared source of transmission, as indicated by the presence of the same HBV genotype. This study underscores the complex interplay of host and viral factors that influence hepatitis B infection outcomes and suggests potential familial transmission pathways.

Shared genetic associations and etiology between obstructive sleep apnea and CVDs: A genome-wide cross-trait analysis and bidirectional Mendelian randomization analysis.

To investigate the genetic correlations and potential causal relationships between obstructive sleep apnea (OSA) and various cardiovascular diseases (CVDs), aiming to enhance understanding of shared genetic mechanisms and improve recognition and treatment of OSA in patients with CVDs. Utilizing genome-wide association study (GWAS) data, we analyzed shared genetics between OSA and CVDs using linkage disequilibrium score regression (LDSC), multi-trait analysis of GWAS (MTAG), and genotype-tissue expression analysis (GTEx TSEA). We further investigated causal relationships using Bayesian colocalization tests, bidirectional Mendelian randomization (MR), and latent causal variable (LCV) analysis. We found strong associations between OSA and multiple CVDs: coronary artery disease (CAD), heart failure (HF), myocardial infarction (MI), stroke, and atrial fibrillation (AF). Novel SNPs related to CVDs were identified during single-trait MTAG analysis. By applying cross-trait MTAG, we identified 15 shared loci between OSA and CAD, 25 shared loci between OSA and MI, and 7 shared loci between OSA and HF. Shared genes are primarily expressed in the blood, heart, kidney, liver, muscle, and pancreas. MR analysis indicated a significant causal effect of OSA on HF and AF as a causal factor for OSA. LCV analysis suggested that AF was causally associated with OSA, while HF showed partial causality. Our study suggests strong genetic correlations between OSA and several CVDs. Further research is needed on the associations between OSA and CVDs, as well as the mechanisms of the identified loci.

Enhancing Across-Population Genomic Prediction for Maize Hybrids

In crop breeding, genomic selection (GS) serves as a powerful tool for predicting unknown phenotypes by using genome-wide markers, aimed at enhancing genetic gain for quantitative traits. However, in practical applications of GS, predictions are not always made within populations or for individuals that are genetically similar to the training population. Therefore, exploring possibilities and effective strategies for across-population prediction becomes an attractive avenue for applying GS technology in breeding practices. In this study, we used an existing maize population of 5820 hybrids as the training population to predict another population of 523 maize hybrids using the GBLUP and BayesB models. We evaluated the impact of optimizing the training population based on the genetic relationship between the training and breeding populations on the accuracy of across-population predictions. The results showed that the prediction accuracy improved to some extent with varying training population sizes. However, the optimal size of the training population differed for various traits. Additionally, we proposed a population structure-based across-population genomic prediction (PSAPGP) strategy, which integrates population structure as a fixed effect in the GS models. Principal component analysis, clustering, and Q-matrix analysis were used to assess the population structure. Notably, when the Q-matrix was used, the across-population prediction exhibited the best performance, with improvements ranging from 8 to 11% for ear weight, ear grain weight and plant height. This is a promising strategy for reducing phenotyping costs and enhancing maize hybrid breeding efficiency.

Two novel sites determine genetic relationships between CPV-2 and FPV: an epidemiological survey of canine and feline parvoviruses in Changchun, China (2020)

Canine parvovirus (CPV-2) and feline parvovirus (FPV) cause severe hemorrhagic diarrhea disease in dogs, cats, and fur-bearing and wildlife carnivores worldwide, continuing to pose significant threats. In this study, 140 rectal swabs were collected from 70 domestic dogs and 70 cats with clinical diarrhea in veterinary clinics in Changchun during 2020. A total of 64.3% (45/70) of dogs and 55.7% (39/70) of cats tested positive for CPV-2 or FPV using colloidal gold strips. Amino acid (aa) sequence alignment of the VP2 protein from 39 CPV-2 and 36 FPV samples revealed that 79.5% (31/39) were CPV-2c, 17.9% (7/39) were a new CPV-2a, and 2.6% (1/39) were mink enteritis virus (MEV). and 8.3% (3/36) FPV from the cats was infected by CPV-2, which suggested that CPV-2c was the dominant variant in dogs and FPV was the major pathogen in cats in Changchun city. Phylogenetic relationships of VP2 genes showed that 26 parvoviruses were closely related to domestic strains previously published in China; however, 8 FPVs and CPV-JL-15/China/2020 were clustered in the lineage of South Asiatic and European countries, and 7 out of 8 FPVs were close to Italy. In addition to Q247H, I248Y, F544Y, and E/V545V/K, two novel site mutations of N23D or L630P in NS1 protein, associated with viral cross-species transmissions, were first found as a reminder of genetic relationships of CPV-2 variants and FPVs in the same branch. Thus, regular and massive virus surveillance of parvovirus is necessary to cope with its ongoing infection, circulation, mutations, and evolutions to new subtypes with strong survival abilities.

Two Erigeron species comparison based on their ingredient profile by UPLC-PDA-QTOF-MS/MS and discriminant analysis.

Erigeron breviscapus (EB) and Erigeron multiradiatus (EM) are the two species of the genus Erigeron (Asteraceae) with extremely close genetic relationships. They were used as the same "meiduoluomi" for the treatment of plague and epidemics in traditional Tibetan medicine. But in traditional Chinese medicine, only EB is used for treatment of cerebrovascular obstruction, hemiplegia due to stroke, coronary artery obstruction, chest congestion, and angina pectoris. These two Erigeron species show different effects in different traditional medicine systems. Therefore, analyzing the chemical compositions of two species will not only enhance comprehension of their medicinal properties but also foster the advancement and exploration of novel applications. However, to date, there has been no comprehensive and detailed investigation comparing the constituents of EB and EM. A methodology for rapid identification of chemical profiles from two Erigeron species was devised through the integration of ultra-high-performance liquid chromatography coupled with quadrupole time-of-flight tandem mass spectrometry (UHPLC-QTOF-MS/MS) and multivariate statistical analysis. Additionally, a UHPLC-photo-diode array (PDA) method was established to precisely quantify of 11 components. A total of 58 constituents comprising flavonoids, phenolic acids, saponin, and long chain fatty acids were elucidated. Thirteen compounds were identified as potential differentiators in chemical profiles among the two Erigeron species. For quantitative assessment, 11 bioactive compounds were simultaneously quantified across 49 batches of Erigeron species samples utilizing UHPLC-PDA with wavelengths of 325, 254, and 266 nm. The method demonstrated excellent precision, linearity, accuracy, repeatability, stability, and recovery. The findings from this study will serve as a reference for quality control, functional activity exploration, and improved clinical application based on the ingredient profiles of the two species. Furthermore, this inaugural investigation into the ingredient profiles of these two species will enhance the potential and optimal utilization of both EB and EM resources.

Genetic Diversity and Selection Signatures of Lvliang Black Goat Using Genome-Wide SNP Data

Lvliang black goat (LBG) is an excellent local breed resource in China that is known for its black fur, excellent meat quality, and strong adaptability. Studying the genetic mechanism and germplasm characteristics of LBG can provide theoretical and practical basis for the protection of the genetic resources of this breed and help implement conservation and breeding. In this study, the genetic diversity of the LBG population was evaluated using whole-genome SNP data. It was found that the LBG population had a high genetic diversity and a low degree of inbreeding. According to the clustering results of male goats and the relationship between individuals, the LBG population was divided into 13 families. Then, through population structure analysis, it was found that LBG had a close genetic relationship with the Nanjiang goat and Qinggoda goat populations, and they may have the same ancestors. The LBG population has retained some ancient genetic characteristics and is a special population that integrates local genetic characteristics and foreign gene flow. Through four selection signal analyses, we detected multiple candidate genes related to economic traits (CFL2, SCD, NLRP14, etc.) and adaptability (C4BPA, FUT8, PRNP, etc.) in the LBG population. In addition, in a comparative analysis with three commercial breeds (Saanen goat, Boer goat and Angora goat) we also found multiple genes related to physical characteristics (ERG, NRG3, EDN3, etc.). Finally, we performed functional enrichment analysis on these genes and explored their genetic mechanisms. This study provides important data support for the protection and breeding of LBG and provides a new perspective for enriching the genetic diversity of goat populations.

Morpho-molecular Genetic Diversity Analysis of Basmati and Non-basmati Rice (Oryza sativa L.) Germplasm

This study evaluated genetic variability and relatedness among 34 rice genotypes, encompassing basmati and non-basmati varieties using morphological and molecular data. The findings revealed significant variability across all traits assessed. High phenotypic and genotypic coefficients of variation (PCV and GCV) were observed for traits such as days to 50% flowering, days to maturity, biological yield, grain yield, test weight, flag leaf length, and number of effective tillers. Notably, high heritability and genetic advance indicated that these traits are likely influenced by additive gene effects, making them suitable for selection in breeding programs. D2 analysis confirmed substantial genetic diversity among the genotypes and five clusters were formed based on the morphological data. Molecular analysis using 13 SSR primers, out of 13 primers 11 primers are showed the banding pattern, with the highest polymorphism information content (PIC) value recorded at 0.79 for marker HvSSR04-46. Clustering based on Jaccard’s dissimilarity coefficient revealed two distinct clusters. Based on the dendrogram pattern molecular data is divided into two clusters, cluster I and Cluster II, cluster I is subdivided into Cluster Ia and Cluster Ib. This research was conducted at Sardar Vallabhbhai Patel University of Agricultural &amp; Technology, Modipuram, Meerut, Uttar Pradesh, highlights the potential for selecting diverse rice genotypes to enhance breeding programs.

Petroleum evolution and its genetic relationship with the associated Jinding Pb[sbnd]Zn deposit in Lanping Basin, Southwest China

The spatial association of hydrocarbons with metalliferous ore deposits is found worldwide and is particularly common to MVT PbZn deposits. Heavy oil and bitumen are found in the Jinding PbZn deposit within the Lanping Basin, South China. However, the temporal and genetic associations between hydrocarbons and the deposit are still controversial. To this end, integrating Raman analysis, ReOs geochronology and transmission electron microscopy analysis of the bitumen and in situ S isotope analyses of the sulfide, the petroleum evolution of the Jinding reservoir and its genetic relationship with the PbZn deposits were discussed. Bitumen ReOs data from this study and published works indicate that the late Triassic shales underwent two distinct oil-generation events before mineralisation (~25 Ma), with initial oil generation occurring during the early Cretaceous (~116 Ma) and the second during the early Paleogene (ca. 68–59 Ma). These two ages agree with the modelled thermal history of the Jinding reservoir. Combining the oil-before-ore timing sequence, high metal abundance of the bitumen, two negative sulfur isotope peaks of the sulfide and high S/C atomic ratio of the bitumen from the Jinding deposit, the oil-containing aqueous solutions were considered as one metal carrier during the hydrocarbon migration and accumulation; further, bacterial sulfate reduction and thermo-chemically induced sulfate reduction processes could have participated in the supply of reduced sulfur for the PbZn deposit precipitation.

The Middle-Late Permian Yakshawa and Late Cretaceous Daresard bauxite deposits, western Iran: Elemental deportment, parental affinities and genesis of REY minerals

The Middle-Late Permian Yakshawa bauxite deposit in the Sanandaj-Sirjan Zone and the Late Cretaceous Daresard bauxite deposit in the Zagros Fold-Thrust Belt have bauxite ores with different textures and mineralogical compositions. The presence of detrital and authigenic REY-phosphates, fluorocarbonates of the bastnasite group, and cerianite with diverse generations reflect an intricate formation process of the REY-bearing minerals in these two deposits. This clearly shows that the studied deposits have a multi-stage evolution including diagenetic and/or low-grade metamorphic, in situ fluid-assisted dissolution–reprecipitation reactions, and later bauxitization. The high abundance of monazite, textural relationships, and its LREE pattern indicate this mineral is the main LREE reservoir in the studied bauxite ores whereas xenotime, both authigenic and detrital, is the main host for HREE. The R-mode factor analyses indicates that the bauxitization process induces, at large, similar interelemental relationships in the studied deposits involving the attitude of Al oxyhydroxides, Ti oxides, and Fe oxyhydroxides to concentrate critical metals and the capability of REY-phosphate of being the main reservoir of REE + Y. As for provenance, the Eu/Eu*, Sm/Nd, and Nb/Ta proxies suggest that the bauxite ores of the Yakshawa deposit have a genetic relationship with Middle-Late Permian mafic volcanic rocks, whereas the ores of the Daresard deposit show parental affinity with the underlying fine-grained clayey limestone of the Sarvak Formation.

In-situ zircon and cassiterite LA-ICP-MS geochronology and implications for granite-hosted Sn deposit models and exploration: Insights from the Cameroon Line

Abstract Tin mineralization of significant economic importance occurs across the continental portion of the Cameroon Line (CL). Tin deposits therein occur as both primary and secondary (residual and alluvial) ore. Though the temporal and, by inference, the genetic link between Sn mineralization and the host granite had long been modeled and widely accepted worldwide, in the CL, however, the age of the granite hosting cassiterite is poorly constrained, preventing a robust assessment of the temporal and genetic relationship between the Sn mineralization and its host rock. Here, we present in-situ zircon and cassiterite laser ablation inductively coupled mass spectrometry (LA-ICP-MS) U-Pb data in order not only to constrain the age of the granitic rock hosting the primary Sn ore but also to bracket the time frame of Sn mineralization, with respect to the magmatic-hydrothermal evolution of the parental magma of the host granite. Zircon from two greisen-altered, cassiterite-bearing granite samples yield overlapping and concordant ages of 64.21 ± 0.59 Ma and 65.46 ± 0.95 Ma, respectively, which are also overlapping with regional granite magmatism in the CL (ca. 65–30 Ma). On the other hand, cassiterite, which is spatially associated with the Paleocene zircon, yields Lower Eocene ages of 54.99 ± 0.35 Ma and 56.08 ± 0.46 Ma. The ca. 10 Myr time gap between zircon and cassiterite suggests that the granite is a passive host not genetically related to the Sn mineralization, which may be linked to a younger, concealed intrusion of ca. 55 Ma. This finding contrasts with the most widely accepted petrogenetic model of tin granite, according to which Sn mineralization and the host granite are cogenetic.

Elucidating genetic variability between randomly bred domestic cats and Persian domestic cats from different geographical locations using microsatellite markers.

The domestic cat (Felis catus) is a newly evolved species in the family Felidae that has developed some great features among mammals. It is critical to conserve these species and prevent inbreeding from reducing their genetic diversity by understanding their genetic relationships and applying the information to breeding management. The diverse population was an excellent choice for studying genetic diversity and inbreeding phenomena. To conduct this research, 128 individuals from 8 populations, including Azerbaijan, Persian, Ahar, Uermia, Tehran, Karaj, Turkish and Shop cat (both genders), were randomly selected from different geographical regions. We selected eight STR markers with different chromosomal locations based on polymorphism and observed allele numbers in the next step. DNA extraction was performed using tail hair root, PCR and electrophoresis, and gel staining was performed according to routine laboratory protocol. For statistical analysis, CONVERT versions POPGENE, ARLEQUIN GenAlEx and R script analysis. Remarkably, our results showed that 23 alleles were identified in 128 samples. The highest number of alleles belonged to the FCa096 locus (eight alleles) in the Persian population, followed by FCa045 (seven alleles) in the Persian and Ahar populations. Another new finding is that the lowest number of alleles belonged to the 35 and FCa77 locus (two alleles). In addition, pairwise differentiation between and within populations was examined using the genetic distance index. Overall, the results showed that the degree of differentiation within the population is high in the Turkish population compared to other population groups and lower in the Azerbaijan population. In addition, principal component discriminant analysis-based analysis based on the ADAGENET package shows the distribution of samples by geographical location. The results show that genetic mixing between populations is high. On this basis, we conclude that randomly bred domestic cats have a higher level of diversity than Persian domestic cats. This is an interesting topic for future work.

A new process for preparing ultrafine WC-Co cemented carbide by doping yttrium within the ammonium metatungstate solution

Ultrafine WC-Co cemented carbide has superior performance of high strength and high hardness, which is widely used in industrial fields. In the traditional process, high temperature carburization method is used to prepare tungsten carbide, and solid-phase mechanical milling method is used to mix grain growth inhibitor (Cr3C2) and tungsten carbide, which easily lead to large WC particle size and uneven WC grain size distribution in WC-Co cemented carbide, thus affecting mechanical properties of the alloy. In the new process, based on the genetic relationship between the particle size of ammonium paratungstate and tungsten carbide, ultrafine ammonium paratungstate uniformly doped with yttrium was firstly obtained by adding a certain amount of ammonia and yttrium oxide into the ammonium metatungstate solution. Then the ammonium paratungstate was calcined to obtain yttrium-doped tungsten trioxide, which was then converted into yttrium-doped ultrafine tungsten carbide powders by introducing carbon monoxide at a low temperature. Finally, the ultrafine WC-Co cemented carbide was prepared by pressure sintering. During the neutralization and crystallization process of ammonium metatungstate solution, the yttrium-doped ultrafine ammonium paratungstate (Fischer particle size 8.4 μm) with narrow particle size distribution and regular morphology was prepared. The yttrium-doped ammonium paratungstate was calcined at 500 °C for 90 min in air atmosphere to obtain yttrium-doped tungsten trioxide powder with a Fischer particle size of 4.5 μm and narrow size distribution. Then the yttrium-doped tungsten trioxide and carbon monoxide gas were reacted at 920 °C for 3h to obtain yttrium-doped ultrafine tungsten carbide powder with a Fischer particle size of 0.32 μm and a specific surface area of 4.44 m2/g, and ultrafine WC-Co cemented carbide with tungsten carbide grain size of 0.28 μm was obtained by pressure sintering. The yttrium uniform distributed effectively inhibited the abnormal growth of tungsten carbide grains. Compared with the WC-Co cemented carbide prepared by solid-phase mechanically mixing tungsten carbide powder and chromium carbide, the yttrium-doped WC-Co cemented carbide had a smaller average tungsten carbide grain size and a more homogeneous microstructure. The prepared yttrium-doped WC-Co cemented carbide had a hardness (HRA) of 94.6, a bending strength of 4841 M, and a coercive force of 42.3 KA/c.

Altitude shapes gut microbiome composition accounting for diet, thyroid hormone levels, and host genetics in a subterranean blind mole rat

The animal gut microbiome acts as a crucial link between the host and its environment, playing a vital role in digestion, metabolism, physiology, and fitness. Using 16S rRNA metabarcoding, we investigated the effect of altitude on the microbiome composition of Anatolian Blind Mole Rats (Nannospalax xanthodon) across six locations and three altitudinal groups. We also factored in the host diet, as well as host microsatellite genotypes and thyroid hormone levels. The altitude had a major effect on microbiome composition, with notable differences in the relative abundance of several bacterial taxa across elevations. Contrary to prior research, we found no significant difference in strictly anaerobic bacteria abundance among altitudinal groups, though facultatively anaerobic bacteria were more prevalent at higher altitudes. Microbiome alpha diversity peaked at mid-altitude, comprising elements from both low and high elevations. The beta diversity showed significant association with the altitude. Altitude had a significant effect on the diet composition but not on its alpha diversity. No distinct altitude-related genetic structure was evident among the host populations, and no correlation was revealed between the host genetic relatedness and microbiome composition nor between the host microbiome and the diet. Free thyroxine (FT4) levels increased almost linearly with the altitude but none of the bacterial ASVs were found to be specifically associated with hormone levels. Total thyroxine (TT4) levels correlated positively with microbiome diversity. Although we detected correlation between certain components of the thyroid hormone levels and the microbiome beta diversity, the pattern of their relationship remains inconclusive.

Diversity and morpho-chemo correlations of Cinnamon (Cinnamomum verum J. Presl) bark oil from Sri Lanka

The wide natural variation of Cinnamomum verum morphology in Sri Lanka suggests the chemo-diversity, which must be revealed for efficient utilization in a vast scope of industries. This study was carried out to determine the variation of essential oil constituents of cinnamon bark from major growing areas of Sri Lanka, morphological markers for oil constituents and genetic relationships for the correlations among major chemical constituents. E-Cinnamaldehyde (CM), (E)-Cinnamyl acetate (CA), Eugenol (EU), Benzyl benzoate (BB), linalool (LN) and β-caryophyllene (CR) were the highest abundant six out of 188 constituents reported through GC-MS analysis of bark essential oil. The mean values and 95% confidence intervals of CM, CA, EU, BB, LN and CR were 65.10±2.4 (60.15, 70.05), 15.93 ±2.14 (11.51, 20.34), 4.07±0.42 (3.19, 4.95), 3.21±0.52 (2.15, 4.28), 1.44 ± 0.16 (1.09,1.79) and 1.31±0.10 (1.11,1.53) respectively. CM was the highest abundant in 29/30 accessions, while CA was the highest abundant only in 1/30. CM varied with growing district. CM was negatively correlated with CA, (r=0.81) at the 0.01% level of significance irrespective of the growing district. The correlation between EU and BB was significant (r=0.49) at 0.01% level of significance. Chemical constituents were linked with the morphological characters: The leaf width (LW) was correlated with EU, (r=0.37) at 0.05% level of significance and the bark thickness (BT) was in a correlation with CR, (r=0.54) at 0.01% level of significance. Gene network model analysis identifying two pathways for CM, CA and BB biosynthesis, and two pathways for EU biosynthesis explained the correlations between major constituents.

Molecular Identification, Histopathology and Antibiotic Susceptibility Profiling of Aeromonas veronii Isolated from Oreochromis niloticus in Bangladesh.

Tilapia (Oreochromis niloticus) is the most widely cultured freshwater fish species in Bangladesh and worldwide. However, commercial tilapia culture systems face increasing challenges from bacterial infections. The objective of this study was to identify the bacterial isolates from infected tilapia inan intensive cage culture farm located along the Shitalakshya River in Bangladesh. Infected fish samples were collected and underwentcomprehensive clinical and post-mortem investigations, followed by phenotypic, biochemical and molecular identification of the bacterial isolates, as well as histopathological and antibiotic susceptibility examinations. Phenotypic and biochemical characterization showed similarities of the -collected isolates with Aeromonas veronii. Moreover, molecular analysis of the bacterial conserved region 16S rRNA also confirmed these isolates as A. veronii. The analysed 16S rRNA sequence (GenBank accession no. PP832815) showed a close relationship (100% identity) with A. veronii from China (GenBank accession no. MT071624) in the NCBI BLAST search, and in the phylogenetic tree, they grouped in a single clade. This close genetic relationship is also supported by the low genetic distance between the isolates. Histopathological analysis revealed gross pathological changes like necrosis, hypertrophy and inflammation in muscle tissues. The isolates were found to be sensitive to multiple antibiotics but resistant to trimethoprim and sulphamethoxazole. This study investigated the presence of A. veronii infection in tilapia (O. niloticus) in an intensive cage culture farm in Bangladesh.

Geochronological and geochemical constraints on the multistage magmatic processes of the Lianhuashan batholith, South China: Implications for the petrogenesis and polymetallic mineralization

The Lianhuashan batholith, which is a composite pluton located in the middle part of a world-class giant tungsten (W) polymetallic belt of South China, hosts a huge reserve of more than 50000 t of W. Despite this great economic significance, the petrogenesis of each phases of the Lianhuashan batholith, as well as its temporal and genetic relationships to the W polymetallic mineralization, is still unclear. To address these questions, we conducted a comprehensive study for the Lianhuashan batholith, including LA-ICP-MS zircon U-Pb dating, whole-rock geochemical and in-situ mineral trace element analyses. Different from previous studies, four main granitic phases (G1 to G4) were identified. The biotite granite (G1) formed from 168.6 to 165.3 Ma, has the lowest Si content and high Al and Fe contents, and is significantly depleted in Ba, Sr, Ti, P, and Nb whereas enriched in U, Hf, Zr, and Y contents. In contrast, the two-mica granite (G2) and fine-grained muscovite granite (G3), formed from 162.8 to 160.5 Ma, exhibit similar characteristics including enrichment in La, Y, Hf, Th, U, and depletion in Ba, Sr, and P. The porphyritic granite (G4) is the latest magmatic phase and formed at 158.3 Ma. It is characterized by high K, Si, Th, U, Zr, Hf contents but low Al, Fe, Sr, P, and Ti contents. These features support that four main phases of the Lianhuashan batholith belong to S-type granites that experienced significant fractional crystallization, and display reduced and low temperature features. Combined with previously published studies, we suggest that the Lianhuashan batholith formed in an intraplate extensional setting triggered by the high-angle rollback subduction of the paleo-Pacific plate. The three early phases (i.e., G1–G3) are in turn more oxidized and are responsible for the transition from Sn- to W-dominated mineralization. In contrast, the G4 granite, characterized by lower oxygen fugacity, is resposible for Pb-Zn-Ag-U polymetallic mineralization.