Genetic Phylogeny Research Articles

Multi-Omics Approach Reveals the Potential Core Vaccine Targets for the Emerging Foodborne Pathogen Campylobacter jejuni.

Campylobacter jejuni is a leading cause of bacterial gastroenteritis in humans around the world. The emergence of bacterial resistance is becoming more serious; therefore, development of new vaccines is considered to be an alternative strategy against drug-resistant pathogen. In this study, we investigated the pangenome of 173 C. jejuni strains and analyzed the phylogenesis and the virulence factor genes. In order to acquire a high-quality pangenome, genomic relatedness was firstly performed with average nucleotide identity (ANI) analyses, and an open pangenome of 8,041 gene families was obtained with the correct taxonomy genomes. Subsequently, the virulence property of the core genome was analyzed and 145 core virulence factor (VF) genes were obtained. Upon functional genomics and immunological analyses, five core VF proteins with high antigenicity were selected as potential core vaccine targets for humans. Furthermore, functional annotations indicated that these proteins are involved in important molecular functions and biological processes, such as adhesion, regulation, and secretion. In addition, transcriptome analysis in human cells and pig intestinal loop proved that these vaccine target genes are important in the virulence of C. jejuni in different hosts. Comprehensive pangenome and relevant animal experiments will facilitate discovering the potential core vaccine targets with improved efficiency in reverse vaccinology. Likewise, this study provided some insights into the genetic polymorphism and phylogeny of C. jejuni and discovered potential vaccine candidates for humans. Prospective development of new vaccines using the targets will be an alternative to the use of antibiotics and prevent the development of multidrug-resistant C. jejuni in humans and even other animals.

DNA isolation and amplification of Dryobalanops oblongifolia DREY and Dryobalanops lanceolata BURCK

Dryobalanops belong to a member of Dipterocarpaceae, which has a high economic value. Due to illegal harvesting for its wood, the population tends to decrease every year, so rapid conservation effort was needed. D. oblongifolia and D. lanceolata were important members of dryobalanops, which have listed as endangered (EN), according to IUCN. This study aims to provide information on the DNA isolation and amplification process. This data was needed as basic information for further research, such as genetic diversity, population genetics, phylogeny studies, or biogeography aspects. DNA isolation was performed using the CTAB method (Cetyl Trimethyl Ammonium Bromide). The amplification process was performed with three barcode markers those were trnL-trnF, rbcL, and matK. The results of DNA isolation showed quite good DNA yield. Amplified DNA using all primers showed successfully with an annealing temperature of 490C for matK, 500C for trnL-trnF, and 550 C for rbcL.

The complete chloroplast genome of Pluchea pteropoda Hemsl, a mangrove associate plant

Pluchea pteropoda Hemsl is a mangrove associate plant of Asteraceae with medicinal properties such as anti-inflammation and fever-relieving. Here, our study presented the complete chloroplast (cp) genome of Pluchea pteropoda Hemsl. The cp genome of P. pteropoda was 152,300 bp in length, including a large single copy (LSC) region of 84,127 bp, a small single copy (SSC) region of 18,093 bp and a pair of inverted repeats (IR) regions of 25,040 bp. A total of 111 unique genes were found, comprising 79 protein-coding genes, 28 tRNA genes, and 4 rRNA genes. The GC content of the cp genome was 37.5%. Phylogenetic analysis suggested that P. pteropoda nested in Pluchea clade, which was closely related to Ageratina adenophora and Senecio scandens. The work provides beneficial data for following researches on the genetic variation, species delimitation, phylogeny and classification of Pluchea genus.

The complete chloroplast genome of Strobilanthes biocullata (Acanthaceae)

Strobilanthes biocullata is a plietesial species endemic to China. The complete chloroplast genome (cp genome) of S. biocullata was sequenced for the first time. The cp genome of S. biocullata is 144,012 bp in length. It consists of a large single copy (LSC) region (91,628 bp) and a small single copy (SSC) region (17,666 bp), which are separated by two inverted repeats (IRs, 34,718 bp). It contains 114 unique genes, including 80 protein-coding genes, 30 tRNA genes, and four rRNA genes. The overall GC content is 38.2%. Phylogenetic analysis of 13 species has been conducted. This newly sequenced cp genome will be useful to further genetic diversity, phylogeny, and genomic studies of the genus Strobilanthes.

The genetic variability, phylogeny and functional significance of E6, E7 and LCR in human papillomavirus type 52 isolates in Sichuan, China

BackgroundVariations in human papillomavirus (HPV) E6 and E7 have been shown to be closely related to the persistence of the virus and the occurrence and development of cervical cancer. Long control region (LCR) of HPV has been shown multiple functions on regulating viral transcription. In recent years, there have been reports on E6/E7/LCR of HPV-16 and HPV-58, but there are few studies on HPV-52, especially for LCR. In this study, we focused on gene polymorphism of the HPV-52 E6/E7/LCR sequences, assessed the effects of variations on the immune recognition of viral E6 and E7 antigens, predicted the effect of LCR variations on transcription factor binding sites and provided more basic date for further study of E6/E7/LCR in Chengdu, China.MethodsLCR/E6/E7 of the HPV-52 were amplified and sequenced to do polymorphic and phylogenetic analysis. Sequences were aligned with the reference sequence by MEGA 7.0 to identify SNP. A neighbor-joining phylogenetic tree was constructed by MEGA 7.0, followed by the secondary structure prediction of the related proteins using PSIPRED 4.0. The selection pressure of E6 and E7 coding regions were estimated by Bayes empirical Bayes analysis of PAML 4.9. The HLA class-I and II binding peptides were predicted by the Immune Epitope Database server. The B cell epitopes were predicted by ABCpred server. Transcription factor binding sites in LCR were predicted by JASPAR database.Results50 SNP sites (6 in E6, 10 in E7, 34 in LCR) were found. From the most variable to the least variable, the nucleotide variations were LCR > E7 > E6. Two deletions were found between the nucleotide sites 7387–7391 (TTATG) and 7698–7700 (CTT) in all samples. A deletion was found between the nucleotide sites 7287–7288 (TG) in 97.56% (40/41) of the samples. The combinations of all the SNP sites and deletions resulted in 12 unique sequences. As shown in the neighbor-joining phylogenetic tree, except for one belonging to sub-lineage C2, others sequences clustered into sub-lineage B2. No positive selection was observed in E6 and E7. 8 non-synonymous amino acid substitutions (including E3Q and K93R in the E6, and T37I, S52D, Y59D, H61Y, D64N and L99R in the E7) were potential affecting multiple putative epitopes for both CD4+ and CD8+ T-cells and B-cells. A7168G was the most variable site (100%) and the binding sites for transcription factor VAX1 in LCR. In addition, the prediction results showed that LCR had the high probability binding sites for transcription factors SOX9, FOS, RAX, HOXA5, VAX1 and SRY.ConclusionThis study provides basic data for understanding the relation among E6/E7/LCR mutations, lineages and carcinogenesis. Furthermore, it provides an insight into the intrinsic geographical relatedness and biological differences of the HPV-52 variants, and contributes to further research on the HPV-52 therapeutic vaccine development.

Silica and secondary metabolites as chemophenetic markers for characterization of bamboo species in relation to genetic and morphometric analysis.

Bamboo is a non-timber forest product and one of the most important grass plants of industrial and domestic use. It is widely distributed in tropical countries including India, China and Southeast Asian countries with wide genetic diversity. The diversity in the available genotypes becomes an important resource for the selection and improvement of the plants for ecological and commercial use. This study investigates eight commercially and ecologically important bamboo species of six genera (Bambusa, Dendrocalamus, Thyrsostachys, Vietnamosasa, Cephalostachyum and Indocalamus) from India, Thailand and Laos. These were evaluated for genetic differences by molecular makers, chemo-morphological variation and ability of silicon accumulation. The genetic cluster analyses of eight RAPD primers revealed genetic similarities in the ranges of 24-55%. The total silica content varied from 18.34 to 40.08ppm in leaves of different bamboo species. Chemical analysis of the silicon content by ICP-OES and secondary metabolite profiling on TLC depicted the prominent distinction among the species. The PCA analysis of quantitative morphological data grouped the species in two major clusters and found to correlate with chemical pattern and genetic similarity to some extent. This is the first report that summarizes species-specific variability of leaf silica content, secondary metabolites, and quantitative morphological data towards delineation of genetic phylogeny of bamboo species.

DArTseq-derived SNPs for the genus Psidium reveal the high diversity of native species

In this study, we characterized DArTseq-derived SNPs for species of Psidium, an important Neotropical genus within the family Myrtaceae. Nine Psidium species were used for the identification and characterization of an interspecific set of SNPs. The samples chosen represented a wide range of variation regarding agronomic traits and geographical origin. The samples were genotyped using the DarTseq methodology. This approach, associated with annotation analysis, generated a set of conserved, polymorphic, and possibly functional SNPs. Most of the SNPs in coding regions of Psidium were annotated for the gene ontology classes. We observed high interspecific diversity among species and considerable intraspecific genetic diversity in native species (P. cattleyanum, P. myrtoides, P. acidum, and P. oblongatum). Psidium guajava, a cultivated species, shows low diversity and shares genetic similarities with the tetraploid P. guineense. The group of markers selected in this study will contribute to the development of a panel of interspecific SNPs for Psidium. Our investigation will support further studies regarding genetic variability, diversity, phylogeny, cytogenetics, and other relationships among Psidium species, constituting essential information for the creation, conservation, management, and use of genetic resources in breeding programs.

Morphological and genetic evaluation of the thumbprint emperor, Lethrinus harak (Forsskål, 1775) in the Pacific and Indian Oceans

Background: The Lethrinidae (emperors) include many important food fish species. Accurate determination of species and stocks is important for fisheries management. The taxonomy of the genus Lethrinus is problematic, for example with regards to the identification of the thumbprint emperor Lethrinus harak. Little research has been done on L. harak diversity in the Pacific and Indian Oceans. This study aimed to evaluate the morphometric and genetic characters of the thumbprint emperor, L. harak (Forsskål, 1775) in the Pacific and Indian Oceans. Methods: This research was conducted in the Marine Biology Laboratory, Faculty of Marine Science and Fisheries, Hasanuddin University, and Division of Fisheries Science, University of Miyazaki. Morphometric character measurements were based on holotype character data, while genetic analysis was performed on cytochrome oxidase subunit I (COI) sequence data. Morphometric data were analysed using principal component analysis (PCA) statistical tests in MINITAB, and genetic data were analysed in MEGA 6. Results: Statistical test results based on morphometric characters revealed groupings largely representative of the Indian and Pacific Oceans. The Seychelles was separated from other Indian Ocean sites and Australian populations were closer to the Pacific than the Indian Ocean group. The genetic distance between the groups was in the low category (0.000 - 0.042). The phylogenetic topology reconstruction accorded well with the morphometric character analysis, with two main L. harak clades representing Indian and Pacific Ocean, and Australia in the Pacific Ocean clade. Conclusions: These results indicate that the morphological character size of L. harak from Makassar and the holotype from Saudi Arabia have changed. Genetic distance and phylogeny reconstruction are closely related to low genetic distance.

The complete mitochondrial genome of Scorpiops tibetanus (Scorpionida; Euscorpiidae Laurie)

This study is the first to sequence and analyze the mitochondrial genome of Scorpiops tibetanus . The results showed that the total length of mitochondrial genome of Scorpiops tibetanus was 14,825 bp, including 13 protein-coding genes, 22 tRNAs, 2 rRNAs, and 1 control region. According to the complete mitochondrial genome, the phylogenetic tree was established by the Scorpiops tibetanus and six closely related species. Phylogenetic tree analysis showed that the Scorpiops tibetanus is sister species to Heterometrus longimanus. This study provides theoretical references for further exploring the genetic diversity and phylogeny of scorpion.

Y chromosome analysis for common surnames in the Japanese male population.

For many years of Japan's long history, Japanese surnames have been handed down patrilineally. This study investigated relations between major surnames and Y chromosomal polymorphism among the Japanese male population. To analyze genetic phylogeny in namesakes, the Y-single nucleotide polymorphism (SNP) plus Y-short tandem repeat (STR) approach was employed. A haplogroup based on SNPs and haplotypes at 17 STR loci were typed in 567 unrelated volunteers recruited in Kanagawa, Japan. Samples covered 27 common surnames such as Satoh and Suzuki, each name having 10-55 bearers. Significant difference was found for SNP haplogroup compositions and a multidimensional scaling plot using STR haplotypes in several surname groups. By contrast, these common surnames displayed wide diversity with phylogenetic networks, suggesting that no genetic drift event has occurred in their history. In all, 22 descent clusters were found, as judgcriteria ed by ad hoc of groups within five mutational steps in the 15 STR loci with the same haplogroup. The times of the most recent common ancestor ranged from 279 to over 2577 years. According to the approximate millennium span of Japanese surname history, descent criteria are expected to be reasonable for grouping within four step-neighbors. High heterogeneity of common surnames resembles that observed for England and Spain, but not for Ireland. Our results highlight that common Japanese surnames consist of descent clusters and many singletons, reflecting a mixture of long-term bearers and short-term bearers among the population. The genetic study of this population revealed characteristic features of Japanese surnames.

Molecular characterization of endangered Iranian terrestrial orchids using ISSR markers and association with floral and tuber-related phenotypic traits.

The online version of this article (10.1007/s12298-020-00920-0) contains supplementary material, which is available to authorized users.

Cytochrome Oxidase C Subunit I (COI) for Identification and Genetic Variation of Loaches (Nemacheilus fasciatus)

Nemacheilus fasciatus is an Indonesian freshwater fish species that can be found in river waters on Java. This fish has a morphological similarity between species. This study aims to identify species of samples found and know their genetic kinship. This study used the Cytochrome Oxidase subunit I (COI) gene as a molecular marker, and then the results were analyzed using MEGA X software. The genetic structure and phylogeny of N. fasciatus sequences were combined with outgroup species from GenBank and analyzed using Maximum Likehood (ML), Pairwise Genetic Distance and Bootstrapping Phylogeny Model of Kimura 2 Parameters. The results showed that the primary pairs of LCO1490 and HCO2198 used to amplify the sample N. fasciatus with COI as a marker. The nucleotide frequencies of these loaches are A=26.5%, T=23.8%, C=19.9% and G=29.9%. The estimated Transition/Transversion bias (R) is 0.60. The number of haplotype diversity (Hd) was 0.972, and nucleotide (Pi) diversity was 0.05115. The kinship of N. fasciatus compared to the outgroup is closer to N. pallidus than N. chrysolaimos. Research needs to be conducted with a larger sample size for the genetic diversity of N. fasciatus in Indonesia.

Genetic Evaluation of the Breeds of Reindeer (Rangifer tarandus) and Their Wild Ancestor Using a New Panel of STR Markers

To study the genetic differentiation and phylogeny of the breeds and populations of reindeer (Rangifer tarandus L.), a test system based on multiplex PCR analysis of 16 highly polymorphic STR markers (Rt6, BMS1788, Rt30, Rt1, Rt9, FCB193, Rt7, BMS745, С143, Rt24, OheQ, С217, С32, NVHRT16, T40 and C276) was developed. Using this test system, 397 animals from 11 samples were studied. Four of these samples belonged to the wild forms of reindeer, while the rest of the samples represented the Nenets, Even, and Evenk breeds reared in different climatic zones of the Russian Federation. For 16 microsatellite loci, 204 alleles were identified, some of which could be considered breed-specific. It was demonstrated that more than 70% of the unique allele pool was concentrated in wild populations of reindeer. Statistical analysis of microsatellite data showed that the developed test system was an effective tool for identifying domesticated and wild forms of reindeer, testing the breed assignment, and determining the migration flows of a species over the vast territory of its distribution.

Abstract IA40: Defining precursors in low-grade lymphomas that seed second lymphomas

Abstract Most patients with low-grade lymphoma will achieve a clinical remission (CR) with standard chemoimmunotherapy. Yet, relapse from minimal residual disease (MRD), either as low-grade or high-grade disease, remains the leading cause of death. Several studies have provided consistent evidence showing the strong prognostic value of measurable MRD using flow cytometry, PCR, next-generation sequencing, or other approaches. While MRD includes the malignant cells that remain in a patient who achieves CR, not all MRD cells may have the functional capability to proliferate into relapse. We recently introduced a nomenclature to more precisely distinguish cells included within MRD. In this nomenclature, M-REC (Minimal-RElapsable Cancer) denotes fully transformed cells capable of driving a relapse; MN-REC (Minimal Non-RElapsable Cancer) denotes fully-transformed cells incapable of driving a relapse; and MRP (Minimal Residual Precursors) denotes residual cells that harbor somatic and/or phenotypic alterations but are not fully malignant, such as those causing a dysplastic “field-effect” in cancers like those of the bladder, head and neck, or esophagus. Studies that defined the genetic phylogeny of lymphoma using diagnostic, relapsed, and transformed B-cell lymphomas from the same patients have identified examples where MRPs repeatedly evolve into clinical lymphomas. This conflicts with the traditional model of cancer evolution, in which “relapses” result from M-RECs that persist after therapy. There are two immediate implications to this paradigm-shifting concept: 1) Many “relapses” are actually second lymphomas, and 2) defining and targeting the vulnerabilities of MRPs may be essential for improving lymphoma-free survival among patients who achieve a CR. It is important to note that the vulnerabilities of MRD may differ within the bone marrow, blood, lymph node, and other sites, so sampling of each is essential. To make this possible, we have advanced two strategies. First, we have established xenografts of human follicular lymphoma explants within immunocompromised mice that capture both malignant and nonmalignant cellular components, as well as predictable transformation to large-cell lymphoma in vivo. Second, we have initiated rapid autopsies of patients with disseminated lymphoma to obtain specimens from multiple organs and thereby define the heterogeneity of environmental niches that support the persistence of MRD. Citation Format: Abner Louissaint, David Weinstock. Defining precursors in low-grade lymphomas that seed second lymphomas [abstract]. In: Proceedings of the AACR Virtual Meeting: Advances in Malignant Lymphoma; 2020 Aug 17-19. Philadelphia (PA): AACR; Blood Cancer Discov 2020;1(3_Suppl):Abstract nr IA40.

Genetic diversity and phylogeny of indigenous rhizobia nodulating faba bean (Vicia faba L.) in Greece

The genetic diversity and phylogeny of fast-growing rhizobia isolated from root nodules of Vicia faba grown in different geographical regions of Greece were assessed. Although Rhizobium leguminosarum sv. viciae is the most common symbiont of Vicia spp. in European soils, there is no available information on native rhizobia nodulating faba bean in Greece. Seventy bacterial strains were isolated and grouped into sixteen distinct profiles based on BOX-PCR fingerprinting. The phylogenetic affiliation was further defined by sequence analysis of the rrs and multilocus sequence analysis (MLSA) of three housekeeping genes (recA, atpD and gyrB). Fifty-eight isolates were affiliated with recently described genospecies gsF-2, represented by R. laguerreae FB206T, whereas six isolates were closely related to gsB and two isolates might belong to gsA. Two isolates assigned to R. hidalgonense and another two non-nodulating strains could not be assigned to any validly defined species and possibly belong to a new rhizobial lineage. Interestingly, R. laguerreae strains were commonly found at all sampling sites, suggesting that they could be the main symbionts of faba beans in Greek soils. According to the phylogenies of two symbiosis-related genes (nodC and nifH), all nodulating isolates belonged to symbiovar (sv.) viciae harboring four distinct nodC gene haplotypes and they were grouped into two clades together with strains assigned to R. laguerreae and genospecies of R. leguminosarum isolated from other countries and continents. This is the first report that R. hidalgonense strains belong to sv. viciae. No correlation was observed between the nodC haplotypes, geographic origin and chromosomal background of the isolates in the study.

Characterization of two complete mitochondrial genomes of Pterocryptis anomala (Siluridae) and its phylogeny and cryptic diversity

Pterocryptis anomala (Siluridae) is an endemic fish species that is distributed in the drainage basins of Southern China. In this study, we reported the complete mitochondrial genomes (mitogenomes) of two P. anomala specimens from different rivers using next-generation sequencing. The gene composition and the structural arrangement of the mitogenomes were similar to those of most other teleosts, although we examined a longer length of control region in these mitogenomes than that in most of published Siluridae mitogenomes. Phylogenetic analyses combining our novel sequences with published mitogenomes and mitochondrial cytochrome c oxidase I (COI) sequences indicated the monophyly of Pterocryptis and a sister relationship between species P. anomala and P. cochinchinensis. However, the monophyly of Pterocryptis was not very robust as a limited number of species were included in our analyses. Additionally, we uncovered that a hidden diversity might occur in P. anomala populations. The likely causes for this cryptic diversity might be the geologic movements of intense uplift of the Qinghai–Tibetan Plateau and evolution of Asian monsoons, as well as low vagility of P. anomala. Our results yielded crucially important insights into the genetic resources, phylogeny and diversity of this endemic species.

Morphological and genetic evaluation of the thumbprint emperor, Lethrinus harak (Forsskål, 1775) in the Pacific and Indian Oceans

Background: The Lethrinidae (emperors) include many important food fish species. Accurate determination of species and stocks is important for fisheries management. The taxonomy of the genus Lethrinus is problematic, for example with regards to the identification of the thumbprint emperor Lethrinus harak. Little research has been done on L. harak diversity in the Pacific and Indian Oceans. This study aimed to evaluate the morphometric and genetic characters of the thumbprint emperor, L. harak (Forsskål, 1775) in the Pacific and Indian Oceans. Methods: This research was conducted in the Marine Biology Laboratory, Faculty of Marine Science and Fisheries, Hasanuddin University, and Division of Fisheries Science, University of Miyazaki. Morphometric character measurements were based on holotype character data, while genetic analysis was performed on cytochrome oxidase subunit I (COI) sequence data. Morphometric data were analysed using principal component analysis (PCA) statistical tests in MINITAB, and genetic data were analysed in MEGA 6. Results: Statistical test results based on morphometric characters revealed groupings largely representative of the Indian and Pacific Oceans. The Seychelles was separated from other Indian Ocean sites and Australian populations were closer to the Pacific than the Indian Ocean group. The genetic distance between the groups was in the low category (0.000 - 0.042). The phylogenetic topology reconstruction accorded well with the morphometric character analysis, with two main L. harak clades representing Indian and Pacific Ocean, and Australia in the Pacific Ocean clade. Conclusions: These results indicate that the morphological character size of L. harak from Makassar and the holotype from Saudi Arabia have changed. Genetic distance and phylogeny reconstruction are closely related to low genetic distance.

Genetic diversity of the Pennaria disticha Goldfuss, 1820 (Cnidaria, Hydrozoa) complex: new insights from Brazil

Analyzing the mitochondrial 16S gene from specimens collected along the Brazilian coast, we expanded the current genetic diversity and phylogeny of the Christmas tree hydroid, Pennaria disticha Goldfuss, 1820 complex. A total of seven clades were retrieved, of which three were recovered among the newly added specimens—two were already known from different locations in previous studies and a new one was formed by a specimen collected near an isolated coastal island in the Sao Paulo state—demonstrating that P. disticha also represents a complex of cryptic species in the southwestern Atlantic. Species delimitation analyses recovered three to five clades as separate species within P. disticha; moreover, the haplotype network confirmed the already suggested scenario of multiple invasive trajectories and helped untangle the genetic relationships between clades. The data presented herein, besides broadening P. disticha genetic diversity, reinforce the importance of barcoding analyses of local populations in cryptic species studies.

Phylogenetic, genetic, and phenotypic diversity of Pseudomonas syringae pv. syringae strains isolated from citrus blast and black pit in Tunisia

AbstractCitrus blast and black pit caused by Pseudomonas syringae pv. syringae (Pss) is the only bacterial disease reported in Tunisian Citrus orchards. The phylogenetic relationship between Pss strains was studied based on multilocus sequence analysis (MLSA), using partial sequences of housekeeping genes rpoD, rpoB, gyrB, cts, and pfk for 14 representative Pss Citrus strains, including the reference strain LMG5496. The MLSA revealed that the studied Tunisian Citrus strains are closely related to LMG5496 and cluster in phylogroup 02. Based on the cts gene, the majority of Citrus strains clustered in clades “a” and “b”. However, five strains were placed in a newly defined clade “g”. We describe the presence of six different type III secreted effectors (T3SEs). These were found with frequencies of 100% for the effector hopAN1 and the helper hrpK1, 65% for hopT1‐2, and 14% for hopN1, hopR1, and hopQ1‐2. Investigation of copper resistance showed that 67% of our Pss Citrus strains from Tunisia are resistant to copper sulphate in vitro, and the copper resistance genes copABCDR were detected in 23% of the strains. Our results present new data concerning the genetic diversity and phylogeny, presence of T3SEs, and copper resistance within the Pss populations that affect Citrus in Tunisia.

The mitochondrial genome of Smerinthus planus (Lepidoptera: Sphingidae) and its comparative analysis with other Lepidoptera species.

In the present study, the complete mitochondrial genome of Smerinthus planus Walker (Lepidoptera: Sphingidae) was sequenced and analyzed to add additional traits for expanding our knowledge on systematics and phylogenetics of world-wide studied Sphingidae moths. The mitochondrial genome is a circular double-stranded DNA molecule, 15368 bp in size. It includes 13 protein-coding genes (PCGs), two ribosomal RNA (rRNA) genes, twenty-two transfer RNA (tRNA) genes, and an adenine (A) + thymine (T) rich region. All the PCGs start with the typical ATN start codons, except for the nad5 gene, which initiates with TTA. The codon usage analysis revealed that Phe, Ile, Lys, Leu, Asn, and Tys were the most common amino acids, while Cys and Trp were least common. Among the 13 PCGs, nine genes harbor the complete termination codon TAA, whereas the remaining four genes (nad1, cob, nad4, and nad3) terminate with TAG. The A+T rich region of S. planus is 318 bp. This region displays the highest A+T rich content, accounting for 91.50%, with both AT skew (-0.09) and GC skew (-0.26) are negative. Like other Lepidopterans, the A+T-rich region of the S. planus also contains some conserved regions, including the motif 'ATAGA' followed by an 18 bp poly-T stretch, a microsatellite-like (AT)8 and a poly-A element. Phylogenetic relationships, based on nucleotide sequences from the genomes of 31 species, confirmed that S. planus belong to the Sphingidae family. This study is aimed to improve the mitochondrial genome database of moths and provide valuable information for studying the genetic evolution and phylogeny of Lepidopteran species.