A 120 d feeding study with adult rats was conducted to investigate the effects of amino acid supplementation of casein and gelatin (based on differences in the amino acid profiles of the two protein sources) on blood lipid parameters (total cholesterol, HDL-cholesterol and fatty acid composition of phospholipids). The concentrations of total cholesterol and HDL-cholesterol were significantly (P < 0.05) higher in rats fed on unsupplemented casein diet compared with those fed on the unsupplemented gelatin diet. Supplementation of casein with glycine or glycine+arginine (amino acids present in large amounts in gelatin) significantly (P < 0.05) reduced concentrations of total serum cholesterol. However, supplementation of gelatin with glutamic acid, methionine, phenylalanine or tyrosine or a mixture of these four amino acids (present in large amounts in casein) had no effect on total serum cholesterol. Supplementation of gelatin with a mixture of glutamic acid, methionine, phenylalanine and tyrosine significantly (P < 0.05) reduced the concentration of stearic acid (18: 0) and elevated the concentration of palmitoleic (16:1 n-7) and oleic (18: 1 n-9) acids in blood, suggesting increased formation of these monounsaturates from their precursor fatty acids by promotion of the activity of Δ9 desaturase by the mixture of the supplemental amino acids. However, supplementation of gelatin with a mixture of the four amino acids significantly (P < 0.05) increased the concentration of linoleic acid (18: 2 n-6) and decreased concentrations of arachidonic acid (20:4 n-6) and other C 20 and C 22 n-6 long-chain polyunsaturated fatty acid ( n-6 LC-PUFA) metabolites of linoleic acid, suggesting a slowing of the linoleic acid to n-6 LC-PUFA pathway.