Gas-phase IR Research Articles

Molecular structure, thermodynamic and spectral characteristics of chloroboron(III) subphthalocyanine and its dodecafluorinated derivative

A comprehensive study of the structural, spectral and energetic properties of chloroboron(III) complexes of subphthalocyanine (H[Formula: see text]SubPc, for the first time) and dodecafluorosubphthalocyanine (F[Formula: see text]SubPc, reinvestigation) was performed by mass-spectroscopy (MS), gas-phase electron diffraction (GED), IR spectroscopy and quantum-chemical (QC) calculations. A synchronous GED/MS method showed that at T = 630 K and T = 540 K, thermally stable H[Formula: see text]SubPc and F[Formula: see text]SubPc molecular forms are present in the gas phase. The geometric structure of free molecules has been determined, in which the N3-B-Cl fragment has the structure of a distorted tetrahedron, and the phthalocyanine skeleton has a dome shape. QC calculations of the geometry agree well with the GED results. The similarities and differences of the molecular structure in the gas and solid phases were discussed. It is shown, that despite the similarity of most geometric parameters, the H[Formula: see text]SubPc and F[Formula: see text]SubPc have significant differences in electronic characteristics, which determines the differences in their physicochemical properties. The interpretation of the experimental IR spectra was carried out. The distribution of potential energy of normal vibrations over the internal vibrational coordinates has been analyzed. The sublimation enthalpies of H[Formula: see text]SubPc ([Formula: see text]H[Formula: see text](589 K) = 135(5) kJ ⋅ mol[Formula: see text] and F[Formula: see text]SubPc ([Formula: see text]H[Formula: see text](516 K) = 189(3) kJ ⋅ mol[Formula: see text] were determined by the mass spectrometric Knudsen effusion method. The obtained data is important for designing processes employed in fabricating optoelectronic devices based on subphthalocyanines by PVD. Experimental geometric parameters for free molecules and vibrational frequencies can be used to calculate the thermodynamic functions of gaseous H[Formula: see text]SubPc and F[Formula: see text]SubPc.

Pyrolysis of Automotive Shredder Residue (ASR): Thermogravimetry, In-Situ Synchrotron IR and Gas-Phase IR of Polymeric Components.

This article reports the characterisation of pyrolysis of automotive shredder residue using in situ synchrotron IR, gas-phase IR, and thermal analyses to explore if the automotive shredder residue can be converted into value-added products. When heating to ~600 °C at different heating rates, thermal analyses suggested one- to two-stage pyrolysis. Transformations in the first stage, at lower temperatures, were attributed to the degradation of carbonyl, hydroxyl, or carboxyl functional stabilisers (aldehyde and ether impurities, additives, and stabilisers in the ASR). The second stage transformations, at higher temperatures, were attributed to the thermal degradation of the polymer char. Simultaneous thermal analyses and gas-phase IR spectroscopy confirmed the evolution of the gases (alkanes (CH4), CO2, and moisture). The synchrotron IR data have demonstrated that a high heating rate (such as 150 °C/min) results in an incomplete conversion of ASRs unless sufficient time is provided. The thermogravimetry data fit the linearised multistage kinetic model at different heating rates. The activation energy of reactions varied between 24.98 and 124.94 kJ/mol, indicating a surface-controlled reaction exhibiting high activation energy during the initial stages and a diffusion and mass transfer control showing lower activation energy at the final stages. The corresponding frequency factors were in the range of 3.34 × 1013-5.68 × 101 mg-1/min for different pyrolysis stages. The evolution of the functional groups decreased with an increase in the heating rate.

Combining Experimental with Computational Infrared and Mass Spectra for High-Throughput Nontargeted Chemical Structure Identification.

The inability to identify the structures of most metabolites detected in environmental or biological samples limits the utility of nontargeted metabolomics. The most widely used analytical approaches combine mass spectrometry and machine learning methods to rank candidate structures contained in large chemical databases. Given the large chemical space typically searched, the use of additional orthogonal data may improve the identification rates and reliability. Here, we present results of combining experimental and computational mass and IR spectral data for high-throughput nontargeted chemical structure identification. Experimental MS/MS and gas-phase IR data for 148 test compounds were obtained from NIST. Candidate structures for each of the test compounds were obtained from PubChem (mean = 4444 candidate structures per test compound). Our workflow used CSI:FingerID to initially score and rank the candidate structures. The top 1000 ranked candidates were subsequently used for IR spectra prediction, scoring, and ranking using density functional theory (DFT-IR). Final ranking of the candidates was based on a composite score calculated as the average of the CSI:FingerID and DFT-IR rankings. This approach resulted in the correct identification of 88 of the 148 test compounds (59%). 129 of the 148 test compounds (87%) were ranked within the top 20 candidates. These identification rates are the highest yet reported when candidate structures are used from PubChem. Combining experimental and computational MS/MS and IR spectral data is a potentially powerful option for prioritizing candidates for final structure verification.

Characterization and Fate of a Septanosyl Ferrier Cation in the Gas and Solution Phases.

Ferrier reactions follow a mechanistic pathway whereby Lewis acid activation of a cyclic enol ether facilitates departure of an allylic leaving group to form a glycosyl Ferrier cation. Attack on the Ferrier cation provides a new acetal linkage concurrent with the transposition of the alkene moiety. The idiosyncratic outcomes of Ferrier reactions of seven-membered ring carbohydrate-based oxepines prompted an investigation of its corresponding septanosyl Ferrier cation. Experiments that characterized the ion, including gas-phase cryogenic IR spectroscopy matched with density functional theory-calculated spectra of candidate cation structures, as well as product analysis from solution-phase Ferrier reactions, are reported here. Results from both approaches revealed an inclination of the seven-membered ring cation to contract to five-membered ring structures. Gas-phase IR spectra matched best to calculated spectra of structures in which five-membered dioxolenium formation opened the oxepine ring. In the solution phase, an attack on the ion by water led to an acyclic enal that cyclized to a C-methylene-aldehydo arabinofuranoside species. Attack by allyl trimethylsilane, on the other hand, was diastereoselective and yielded a C-allyl septanoside.

Can Copper(I) and Silver(I) be Hydrogen Bond Acceptors?

Gold(I) centers can form moderately strong (Au⋅⋅⋅H) hydrogen bonds with tertiary ammonium groups, as has been demonstrated in the 3AuCl+ (3+ =1-(tert-butyl)-3-phenyl-4-(2-((dimethylammonio)methyl)phenyl)-1,2,4-triazol-5-ylidene) complex. However, similar hydrogen bonding interactions with isoelectronic silver(I) or copper(I) centers are unknown. Herein, we first explored whether the Au⋅⋅⋅H bond originally observed in 3AuCl+ can be strengthened by replacing Cl with Br or I. Experimental gas-phase IR spectra in the ∼3000 cm-1 region showed only a small effect of the halogen on the Au⋅⋅⋅H bond. Next, we measured the spectra of 3AgCl+ , which exhibited significant differences compared to its 3AuX+ counterparts. The difference has been explained by DFT calculations which indicated that the Ag⋅⋅⋅H interaction is only marginal in this complex, and a Cl⋅⋅⋅H hydrogen bond is formed instead. Calculations predicted the same for the 3CuCl+ complex. However, we noticed that for Ag and Cu complexes with less flexible ligands, such as dimethyl(2-(dimethylammonio)phenyl)phosphine (L7 H+ ), the computations predict the presence of the respective Ag⋅⋅⋅H and Cu⋅⋅⋅H hydrogen bonds, with a strength similar to the Au⋅⋅⋅H bond in 3AuCl+ . We, therefore, propose possible complexes where the presence of (Ag/Cu)⋅⋅⋅H bonds could be experimentally verified to broaden our understanding of these unusual interactions.

IR/UV Double Resonance Study of the 2-Phenylallyl Radical and its Pyrolysis Products.

Isolated 2-phenylallyl radicals (2-PA), generated by pyrolysis from a nitrite precursor, have been investigated by IR/UV ion dip spectroscopy using free electron laser radiation. 2-PA is a resonance-stabilized radical that is considered to be involved in the formation of polycyclic aromatic hydrocarbons (PAH) in combustion, but also in interstellar space. The radical is identified based on its gas-phase IR spectrum. Furthermore, a number of bimolecular reaction products are identified, showing that the self-reaction as well as reactions with unimolecular decomposition products of 2-PA form several PAH efficiently. Possible mechanisms are discussed and the chemistry of 2-PA is compared with the one of the related 2-methylallyl and phenylpropargyl radicals.

S-H···O Hydrogen Bond Can Win over O-H···S Hydrogen Bond: Gas-Phase Spectroscopy of 2-Fluorothiophenol···H2O Complex.

Study of sulfur (S) centered hydrogen bonding (SCHB) interactions in the literature is mostly limited to the molecular systems where S acts as a hydrogen-bond acceptor. It has been found that this unconventional SCHB is similar in strength to any conventional hydrogen bonding interaction involving electronegative atoms. However, SCHB involving S as a hydrogen-bond donor is not explored much in the literature. Herein, we have studied the nature and strength of an unconventional S-H···O hydrogen bond in a 1:1 complex of 2-fluorothiophenol (2-FTP) and H2O using gas-phase electronic and IR spectroscopy in combination with quantum chemistry calculations. Both of the two conformers of 2-FTP···H2O observed in the experiment are found to be stabilized primarily by S-H···O hydrogen bonding interaction. O-H···S hydrogen-bonded conformers of the complex, which are higher in energy, are not observed in the experiment. There is a nice agreement between the theoretical and experimental IR spectra of the two observed conformers. The observed IR red-shift of 25-30 cm-1 in the S-H stretching frequency of both the conformers of the complex with respect to that of the 2-FTP monomer bespeaks that the S-H···O hydrogen bond present in 2-FTP···H2O is weak in nature. The present work demonstrates that the S-H···O hydrogen bond can have preference over the O-H···S hydrogen bond depending on the pKa values or proton affinities of the hydrogen bonding partners in a complex.

Encouraging Student Engagement by Using a POGIL Framework for a Gas-Phase IR Physical Chemistry Laboratory Experiment

Encouraging Student Engagement by Using a POGIL Framework for a Gas-Phase IR Physical Chemistry Laboratory Experiment

Investigations into the gas-phase photolysis and OH radical kinetics of nitrocatechols: implications of intramolecular interactions on their atmospheric behaviour

Abstract. The Environmental Simulation Chamber made of Quartz from the University “Alexandru Ioan Cuza” (ESC-Q-UAIC), at Iasi, Romania, was used to investigate the gas-phase reaction rate coefficients for four nitrocatechols toward OH radicals under simulated atmospheric conditions. Employing relative rate techniques at a temperature of 298 ± 2 K and a total air pressure of 1 atm, the obtained rate coefficients (in 10−12 cm3 s−1) were as follows: k3NCAT = (3.41 ± 0.37) for 3-nitrocatechol and k5M3NCAT = (5.55 ± 0.45) for 5-methyl-3-nitrocatechol at 365 nm, using CH3ONO photolysis as OH radicals source and dimethyl ether and cyclohexane as reference compounds, and k4NCAT = (1.27 ± 0.19) for 4-nitrocatechol and k4M5NCAT = (0.92 ± 0.14) for 4-methyl-5-nitrocatechol at 254 nm using H2O2 as OH radicals source and dimethyl ether and methanol as reference compounds. The photolysis rates in the actinic region, scaled to atmospheric relevant conditions by NO2 photolysis, were evaluated for 3-nitrocatechol and 5-methyl-3-nitrocatechol: J3NCAT = (3.06 ± 0.16) × 10−4 s−1 and J5M3NCAT = (2.14 ± 0.18) × 10−4 s−1, respectively. The photolysis rate constants at 254 nm were measured for 4-nitrocatechol and 4-methyl-5-nitrocatechol and the obtained values are J4NCAT = (6.7 ± 0.1) × 10−5 s−1 and J4M5NCAT = (3.2 ± 0.3) × 10−5 s−1. Considering the obtained results, our study suggests that photolysis may be the main degradation process for 3-nitrocatechol and 5-methyl-3-nitrocatechol in the atmosphere, with a photolytic lifetime in the atmosphere of up to 2 h. Results are discussed in terms of the reactivity of the four nitrocatechols under investigation toward OH-radical-initiated oxidation and their structural features. The rate coefficient values of the nitrocatechols are also compared with those estimated from the structure-activity relationship for monocyclic aromatic hydrocarbons and assessed in relation to their gas-phase IR spectra. Additional comparison with similar compounds is also presented, underlining the implications toward possible degradation pathways and atmospheric behaviour.

Formation of the acenaphthylene cation as a common C2H2-loss fragment in dissociative ionization of the PAH isomers anthracene and phenanthrene.

Polycyclic aromatic hydrocarbons (PAHs) are thought to be a major constituent of astrophysical environments, being the carriers of the ubiquitous aromatic infrared bands (AIBs) observed in the spectra of galactic and extra-galactic sources that are irradiated by ultraviolet (UV) photons. Small (2-cycles) PAHs were unambiguously detected in the TMC-1 dark cloud, showing that PAH growth pathways exist even at low temperatures. The processing of PAHs by UV photons also leads to their fragmentation, which has been recognized in recent years as an alternative route to the generally accepted bottom-up chemical pathways for the formation of complex hydrocarbons in UV-rich interstellar regions. Here we consider the C12H8+ ion that is formed in our experiments from the dissociative ionization of the anthracene and phenanthrene (C14H10) molecules. By employing the sensitive action spectroscopic scheme of infrared pre-dissociation (IRPD) in a cryogenic ion trap instrument coupled to the free-electron lasers at the FELIX Laboratory, we have recorded the broadband and narrow line-width gas-phase IR spectra of the fragment ions (C12H8+) and also the reference spectra of three low energy isomers of C12H8+. By comparing the experimental spectra to those obtained from quantum chemical calculations we have identified the dominant structure of the fragment ion formed in the dissociation process to be the acenaphthylene cation for both isomeric precursors. Ab initio molecular dynamics simulations are presented to elucidate the fragmentation process. This result reinforces the dominant role of species containing a pentagonal ring in the photochemistry of small PAHs.

Infrared Spectroscopy of Jet-cooled “GrandPAHs” in the 3–100 μm Region

Abstract Although large polycyclic aromatic hydrocarbons (PAHs) are likely to be responsible for IR emission of gaseous and dusty regions, their neutral experimental high-resolution gas-phase IR spectra—needed to construct accurate astronomical models—have so far remained out of reach because of their nonvolatility. Applying laser desorption to overcome this problem, we report here the first IR spectra of the jet-cooled large PAHs coronene (C24H12), peropyrene (C26H14), ovalene (C32H14), and hexa(peri)benzocoronene (C42H18) in the 3–100 μm region. Apart from providing experimental spectra that can be compared directly to astronomical data, such IR spectra are crucial for assessing the accuracy of theoretically predicted spectra used to interpret interstellar IR emission. Here we use the experimental spectra to evaluate the performance of conventional calculations using the harmonic approximation, as well as calculations with an anharmonic (GVPT2) treatment. The harmonic prediction agrees well with the experiment between 100 and 1000 cm−1 (100 and 10 μm) but shows significant shortcomings in the combination band (1600–2000 cm−1, 6.25–5 μm) and CH-stretch (2950–3150 cm−1, 3.4–3.17 μm) regions. Especially the CH-stretch region is known to be dominated by the effects of anharmonicity, and we find that large PAHs are no exception. However, for the CH out-of-plane region (667–1000 cm−1, 15–10 μm) the anharmonic treatment that significantly improves the predicted spectra for small PAHs leads to large and unrealistic frequency shifts, and intensity changes for large PAHs, thereby rendering the default results unreliable. A detailed analysis of the results of the anharmonic treatment suggests a possible route for improvement, although the underlying cause for the large deviations remains a challenge for theory.

The Composition of Saturated Vapor over 1-Butyl-3-methylimidazolium Tetrafluoroborate Ionic Liquid: A Multi-Technique Study of the Vaporization Process.

A multi-technique approach based on Knudsen effusion mass spectrometry, gas phase chromatography, mass spectrometry, NMR and IR spectroscopy, thermal analysis, and quantum-chemical calculations was used to study the evaporation of 1-butyl-3-methylimidazolium tetrafluoroborate (BMImBF4). The saturated vapor over BMImBF4 was shown to have a complex composition which consisted of the neutral ion pairs (NIPs) [BMIm+][BF4−], imidazole-2-ylidene C8N2H14BF3, 1-methylimidazole C4N2H6, 1-butene C4H8, hydrogen fluoride HF, and boron trifluoride BF3. The vapor composition strongly depends on the evaporation conditions, shifting from congruent evaporation in the form of NIP under Langmuir conditions (open surface) to primary evaporation in the form of decomposition products under equilibrium conditions (Knudsen cell). Decomposition into imidazole-2-ylidene and HF is preferred. The vapor composition of BMImBF4 is temperature-depended as well: the fraction ratio of [BMIm+][BF4−] NIPs to decomposition products decreased by about a factor of three in the temperature range from 450 K to 510 K.

Non-Covalent Forces in Naphthazarin—Cooperativity or Competition in the Light of Theoretical Approaches

Non-covalent interactions responsible for molecular features and self-assembly in Naphthazarin C polymorph were investigated on the basis of diverse theoretical approaches: Density Functional Theory (DFT), Diffusion Quantum Monte Carlo (DQMC), Symmetry-Adapted Perturbation Theory (SAPT) and Car-Parrinello Molecular Dynamics (CPMD). The proton reaction paths in the intramolecular hydrogen bridges were studied. Two potential energy minima were found indicating that the proton transfer phenomena occur in the electronic ground state. Diffusion Quantum Monte Carlo (DQMC) and other levels of theory including Coupled Cluster (CC) employment enabled an accurate inspection of Potential Energy Surface (PES) and revealed the energy barrier for the proton transfer. The structure and reactivity evolution associated with the proton transfer were investigated using Harmonic Oscillator Model of Aromaticity - HOMA index, Fukui functions and Atoms In Molecules (AIM) theory. The energy partitioning in the studied dimers was carried out based on Symmetry-Adapted Perturbation Theory (SAPT) indicating that dispersive forces are dominant in the structure stabilization. The CPMD simulations were performed at 60 K and 300 K in vacuo and in the crystalline phase. The temperature influence on the bridged protons dynamics was studied and showed that the proton transfer phenomena were not observed at 60 K, but the frequent events were noticed at 300 K in both studied phases. The spectroscopic signatures derived from the CPMD were computed using Fourier transformation of autocorrelation function of atomic velocity for the whole molecule and bridged protons. The computed gas-phase IR spectra showed two regions with OH absorption that covers frequencies from 2500 cm to 2800 cm at 60 K and from 2350 cm to 3250 cm at 300 K for both bridged protons. In comparison, the solid state computed IR spectra revealed the environmental influence on the vibrational features. For each of them absorption regions were found between 2700–3100 cm and 2400–2850 cm at 60 K and 2300–3300 cm and 2300–3200 cm at 300 K respectively. Therefore, the CPMD study results indicated that there is a cooperation of intramolecular hydrogen bonds in Naphthazarin molecule.

Gas-Phase Structural Analysis of Supramolecular Assemblies.

Ion mobility spectrometry and gas-phase IR action spectroscopy are two structure-sensitive mass-spectrometric methods becoming more popular recently. While ion mobility spectrometry provides collision cross sections as a size and shape dependent parameter of an ion of interest, gas-phase spectroscopy identifies functional groups and is capable of distinguishing different isomers. Both methods have recently found application for the investigation of supramolecular assemblies. We here highlight several aspects.Starting with the characterization of switching states in azobenzene photoswitches as well as redox-switchable lasso-type pseudorotaxanes, structures of isomers can be distinguished and mechanistic details analyzed. Ion mobility mass spectrometry in combination with gas-phase H/D-exchange reactions unravels subtle structural details as described for the chiral recognition of crown ether amino acid complexes. Gas-phase IR spectroscopy allows identification of details of the binding patterns in dimeric amino acid clusters as well as the serine octamer. This research can be extended into the analysis of peptide assemblies that are of medical relevance, for example, in Alzheimer's disease, and into a general hydrophobicity scale for natural as well as synthetic amino acids. The development of ultracold gas-phase spectroscopy that for example makes use of ions trapped in liquid helium droplets provides access to very well resolved spectra. The combination of ion mobility separation of ions with subsequent spectroscopic analysis even permits separation of different isomers and studying them separately with respect to their structure. This represents a great advantage of these gas-phase methods over solution experiments, in which the supramolecular complexes under study typically equilibrate and thus prevent a separate investigation of different isomers. At the end of this overview, we will discuss larger and more complex supramolecules, among them giant halogen-bonded cages and complex intertwined topologies such as molecular knots and Solomon links.

Observation of an Unusually Large IR Red-Shift in an Unconventional S-H···S Hydrogen-Bond.

The S-H···S non-covalent interaction is generally known as an extremely unconventional weak hydrogen-bond in the literature. The present gas-phase spectroscopic investigation shows that the S-H···S hydrogen-bond can be as strong as any conventional hydrogen-bond in terms of the IR red-shift in the stretching frequency of the hydrogen-bond donor group. Herein, the strength of the S-H···S hydrogen-bond has been determined by measuring the red-shift (∼150 cm-1) of the S-H stretching frequency in a model complex of 2-chlorothiophenol and dimethyl sulfide using isolated gas-phase IR spectroscopy coupled with quantum chemistry calculations. The observation of an unusually large IR red-shift in the S-H···S hydrogen-bond is explained in terms of the presence of a significant amount of charge-transfer interactions in addition to the usual electrostatic interactions. The existence of ∼750 S-H···S interactions between the cysteine and methionine residues in 642 protein structures determined from an extensive Protein Data Bank analysis also indicates that this interaction is important for the structures of proteins.

Do Xylylenes Isomerize in Pyrolysis?

We report infrared spectra of xylylene isomers in the gas phase, using free electron laser (FEL) radiation. All xylylenes were generated by flash pyrolysis. The IR spectra were obtained by monitoring the ion dip signal, using a IR/UV double resonance scheme. A gas phase IR spectrum of para‐xylylene was recorded, whereas ortho‐ and meta‐xylylene were found to partially rearrange to benzocyclobutene and styrene. Computations of the UV oscillator strength for all molecules were carried out and provde an explanation for the observation of the isomerization products.

The interplay of VSCF/VCI calculations and matrix-isolation IR spectroscopy – Mid infrared spectrum of CH3CH2F and CD3CD2F

We present the first matrix-isolation infrared (MI-IR) spectra of CH3CH2F and its isotopologue CD3CD2F in Neon and Argon matrix, together with new gas-phase IR spectra. Extensive vibrational self-consistent field and configuration interaction (VSCF/VCI) calculations are performed, based on an ab initio potential energy surface at ae-CCSD(T)-F12a/cc-pCVTZ-F12 level of electronic structure theory. We encounter an excellent agreement between VCI calculated transitions and the experimental MI-IR and gas-phase IR spectra. Mean absolute deviations are scattering between 1 and 4 cm−1. The interplay of accurate vibrational structure calculations and high-resolution infrared experiments enables unprecedented insights in the CH respectively CD stretch region, providing the first rigorous assignment of the energetically very close ν1,ν12 and ν13 fundamental transitions.

Ion spectroscopy of heterogeneous mixtures: IRMPD and DFT analysis of anomers and conformers of monosaccharides

The gas phase IR spectra of three protonated hexosamines are measured in the 3 μm range using IRMPD spectroscopy and compared with DFT simulation of the IR spectra to identify the ring conformations and the contributions of the α and β anomers to the experimental spectra. We propose an original approach for the deconvolution and quantification of heterogeneous IR spectra based on linear combination of the DFT spectra. The method is applied to the analysis of a two-component anomeric mixture and validated using NMR analysis. Finally, we further estimate the relative populations of a three-component mixture: the anomers and conformers of glucosamine.

The Sequence of Coronene Hydrogenation Revealed by Gas-phase IR Spectroscopy

Abstract Gas-phase coronene cations ( ) can be sequentially hydrogenated with up to 24 additional H atoms, inducing a gradual transition from a planar, aromatic molecule toward a corrugated, aliphatic species. The mass spectra of hydrogenated coronene cations show that molecules with odd numbers of additional hydrogen atoms (n H) are dominant, with particularly high relative intensity for “magic numbers” n H = 5, 11, and 17, for which hydrogen atoms have the highest binding energies. Reaction barriers and binding energies strongly affect the hydrogenation sequence and its site specificity. In this contribution, we monitor this sequence experimentally by the evolution of infrared multiple-photon dissociation (IRMPD) spectra of gaseous with n H = 3–11, obtained using an infrared free electron laser coupled to a Fourier transform ion cyclotron mass spectrometer. For weakly hydrogenated systems (n H = 3, 5) multiple-photon absorption mainly leads to loss of H atoms (and/or H2). With increasing n H, C2H2 loss becomes more relevant. For n H = 9, 11, the carbon skeleton is substantially weakened and fragmentation is distributed over a large number of channels. A comparison of our IRMPD spectra with density functional theory calculations clearly shows that only one or two hydrogenation isomers contribute to each n H. This confirms the concept of hydrogenation occurring along very specific sequences. Moreover, the atomic sites participating in the first 11 steps of this hydrogenation sequence are clearly identified.

Conformational Preferences of Isolated Glycylglycine (Gly-Gly) Investigated with IRMPD-VUV Action Spectroscopy and Advanced Computational Approaches.

In this article, we report the results of gas-phase IR spectroscopy of neutral glycylglycine (Gly-Gly) in the 700-1850 cm-1 frequency range. A combination of laser desorption, jet-cooling, and IR multiple-photon dissociation vacuum-ultraviolet (IRMPD-VUV) action spectroscopy is employed, together with extensive quantum chemical calculations that assist in the analysis of the experimental data. As a result, we determined that the most favorable conformer in the low-temperature environment of the supersonic jet is the nearly planar structure with two C5 hydrogen-bonding interactions. Calculations clearly show that this conformer is favored because of its flexibility (considerable entropy stabilization) as well as efficient conformer relaxation processes in the jet. To gain more understanding into the relative stability of the lowest-energy Gly-Gly conformers, the relative strength of hydrogen bonding and steric interactions is analyzed using the noncovalent interactions (NCI) approach.