The saturation of natural gas hydrates is a key parameter for characterizing hydrate reservoirs, estimating hydrate reserves, and developing hydrate as an energy resource. Several methods have been proposed to estimate hydrate saturation, although most of these studies rely on logging and seismic data. However, the methods for estimating hydrate saturation from recovered core sediments have not been thoroughly reviewed, which hinders a deeper understanding, proper application, and the use of these experimental data to integrate geophysical and numerical model results with the actual geological conditions. In this paper, the methods widely used for estimating natural gas hydrate saturation from core sediments, including those based on pore water chemistry (Cl− concentration, δD, and δ18O values), gas volumetric analysis, and temperature anomaly, have been summarized in terms of the principle, estimation strategy, and issues to be considered of each method. The applicability, advantages and disadvantages, and scope of application of each method are also compared and discussed. All methods for estimating gas hydrate saturation have certain limitations. A comprehensive application of results from multiple methods could lead to a better understanding of the amount of gas hydrate in sediments, although the chlorinity of pore water is the most commonly used method of estimation.