Estuarine contamination by Microplastics (MPs) is a mater of serious concern since these areas offer the society valuable ecosystem, economic, and recreational services such as breeding and feeding ground for fish, carbon fixation, nutrients recycling and port development. The Meghna estuary, located along the Bengal delta coast, provides livelihoods for thousands of peoples in Bangladesh, and served as breeding ground for national fish, Hilsha shad. Therefore, knowledge and understanding on any kind of pollution including MPs of this estuary is essential. In this study, the abundance, characteristics and contamination assessment of MPs from the surface water of a Meghna estuary were investigated for the first time. The results demonstrated that MPs were present in all samples and the abundance ranged from 33.33 to 316.67 item/m3 with a mean value of 128.89 ± 67.94 item/m3. Morphological analyses resulted in four types of MPs such as fibers (87%), fragments (6%), foam (4%), and films (3%) with the majority of these being colored (62%) and smaller (<0.5 mm) in size (88%). On the other hand, FTIR analysis for chemical characteristics confirmed five types of polymers, including polythene (PE), polystyrene (PS), polythene terephthalate (PET), polypropylene (PP), and polyvinyl chloride (PVC). The area was determined to be moderately to severely contaminated with MPs based on contamination factor (CF) values (6.18 ± 2.08 to 2.50 ± 1.0) and the pollutant load index (PLI) value (1.94 ± 0.33) as these values were > 3–6 for CF, and >1 for PLI. These results can be utilized to develop policy for the protection of this important environment.