Abstract When planning bioenergy production from biomass, planners should take into account each and every stakeholder along the biomass supply chains, e.g. biomass resources suppliers, transportation, conversion and electricity suppliers. Also, the planners have to consider social concerns, environmental and economical impacts related with establishing the biomass systems and the specific difficulties of each country. To overcome these problems in a sustainable manner, a robust decision support system is required. For that purpose, a two levels general Bioenergy Decision System (gBEDS) for bioenergy production planning and implementation was developed. The core part of the gBEDS is the information base, which includes the basic bioenergy information and the detailed decision information. Basic bioenergy information include, for instance, the geographical information system (GIS) database, the biomass materials’ database, the biomass logistic database and the biomass conversion database. The detailed decision information considers the parameters’ values database with their default values and the variables database, values obtained by simulation and optimization. It also includes a scenario database, which is used for demonstration to new users and also for case based reasoning by planners and executers. Based on the information base, the following modules are included to support decision making: the simulation module with graph interface based on the unit process (UP) definition and the genetic algorithms (GAs) methods for optimal decisions and the Matlab module for applying data mining methods (fuzzy C-means clustering and decision trees) to the biomass collection points, to define the location of storage and bioenergy conversion plants based on the simulation and optimization model developed of the whole life cycle of bioenergy generation. Furthermore, Matlab is used to set up a calculation model with crucial biomass planning parameters (e.g. costs, CO2 emissions), over the predefined biomass supply chains. The GIS based interface allows visualization of all bioenergy conversion plants and storage data to support the users’ decision based on quantifiable outputs. With the help of the graphical interface, the users can define easily the feasible biomass supply chains, take decisions and evaluate them according to their own interests, might they be environmental, economical, social or others. Therefore, the gBEDS supports biomass energy planners in both national and regional levels to assess the options (technically and economically) of biomass utilization and plan for bioenergy generation in a competent and sustainable way.