Orchids are endangered due to their extremely high ornamental and medicinal values, and their growth and development are closely related to root fungal communities. Therefore, the study of fungi in orchid roots helps in the protection and population restoration of orchids. This study compared the specificity and composition of the fungal community in the roots of the greater butterfly-orchid Platanthera chlorantha under three precipitation conditions (400–500 mm, L; 700–800 mm, M; and 1000–1100 mm, H). The results showed that non-mycorrhizal fungi accounted for >92% of the root fungal community of P. chlorantha. The proportion of non-mycorrhizal fungi Trichoderma in L (12.84%) and M (25.26%) conditions was significantly higher than that in H (2.57%), indicating that with an increase in precipitation, they play important roles in improving plant drought resistance and growth and development. The only mycorrhizal fungus Ceratobasidiaceae, which accounted for >1% of the total sequences, was significantly reduced under high precipitation habitats, indicating that it is more likely to survive in low precipitation habitats. Chao 1 and ACE index increased significantly with increased precipitation; however, there was no significant difference in Simpson and Shannon index, indicating that precipitation affects the structure of the root symbiotic fungal community of P. chlorantha, although the fungal community only revolves around some key species changes. This study provides a reference for the in-depth analysis of the relationship between fungal communities and environmental factors in orchid roots, and a theoretical basis for the protection and ecological restoration of orchid populations.
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