Plant Pathogenic Fungi Research Articles

Purine metabolism in plant pathogenic fungi.

In eukaryotic cells, purine metabolism is the way to the production of deoxyribonucleic acid (DNA) and ribonucleic acid (RNA) and plays key roles in various biological processes. Purine metabolism mainly consists of de novo, salvage, and catabolic pathways, and some components of these pathways have been characterized in some plant pathogenic fungi, such as the rice blast fungus Magnaporthe oryzae and wheat head blight fungus Fusarium graminearum. The enzymatic steps of the de novo pathway are well-conserved in plant pathogenic fungi and play crucial roles in fungal growth and development. Blocking this pathway inhibits the formation of penetration structures and invasive growth, making it essential for plant infection by pathogenic fungi. The salvage pathway is likely indispensable but requires exogenous purines, implying that purine transporters are functional in these fungi. The catabolic pathway balances purine nucleotides and may have a conserved stage-specific role in pathogenic fungi. The significant difference of the catabolic pathway in planta and in vitro lead us to further explore and identify the key genes specifically regulating pathogenicity in purine metabolic pathway. In this review, we summarized recent advances in the studies of purine metabolism, focusing on the regulation of pathogenesis and growth in plant pathogenic fungi.

Ant handling changes myrmecochore seed coat microbiomes and alters diversity of seed‐borne plant pathogenic fungi

Abstract The putative benefits to seeds in myrmecochory (ant‐mediated seed dispersal) are often cast in a reward context. However, microbes have been mostly overlooked as seed mortality agents in myrmecochory, as have potential treatments provided by ant‐handling. We investigated the effects of ant handling on the diversity of seed coat fungal communities of three myrmecochorous plant species. Ant‐handling altered measures of both alpha and beta diversity of fungal communities. Ant‐handled seeds harboured different overall fungal communities and plant pathogen communities than non‐ant‐handled seeds. The myrmecochore pathogenic fungal community showed high dissimilarity (high pairwise community turnover) between ant‐handled and control seeds, while beta diversity measures for ant‐handled seeds and seeds with manually removed elaiosomes were less dissimilar. Ant handling may offer an additional benefit to myrmecochorous seeds via the reduction in the seed coat pathogenic community, which may be driven by elaiosome removal or as a by‐product of ant cleaning behaviours and chemical secretions. Read the free Plain Language Summary for this article on the Journal blog.

The in vivo impact of pomegranate peel application, individually or in combination, on plant pathogenic fungi

The in vivo impact of pomegranate peel application, individually or in combination, on plant pathogenic fungi

DFT and Molecular Docking Studies of Two Heterocyclic Chalcone Derivatives

AbstractThe newly synthesized heterocyclic chalcone derivatives 3‐(5‐methyl furan‐2‐yl)‐1‐phenyl prop‐2‐en‐1‐one (MFPP) and 1‐(4‐chlorophenyl)‐3‐(5‐methylfuran‐2‐yl) prop‐2‐en‐1‐one (CPMFP) are recently being recognized for their cytotoxicity and anti‐plant pathogenic fungi activities. The quantum chemical calculations for the above‐mentioned compounds have been performed using B3LYP/6‐311++G (d,p) level of theory to get perceptive information about the molecules. After verifying the drug‐likeness of the title compounds, chemical reactivity has been analyzed through frontier molecular orbital analysis. The quantitative and qualitative description of activity at various sites has been investigated through conceptual DFT approach and molecular electrostatic potential surface analyses, respectively. In‐silico bioactivity studies of these compounds with the main protease (6LU7) present in SARS‐CoV‐2 causing COVID‐19, human breast cancer cell line (6VJ3), plant pathogenic fungi R. Solani (4G9N), and G. Zeae (2L2F) have exposed a reasonable binding affinity and inhibition constant with all these targets.

Oomycetes as damping‐off pathogens and functional plant traits associated with the susceptibility of west Australian native plant species

AbstractDamping‐off oomycete and fungal plant pathogens reduce the germination, emergence, and survival of seedlings. In agricultural systems, this poses a significant problem as it may reduce productivity; in contrast, the impact is more subtle in natural ecosystems and may be essential for maintaining the structure and diversity of plant communities. The oomycete genus Phytophthora is frequently detected in natural plant communities causing disease in mature plants, but it is rarely assessed as a damping‐off pathogen. A pathogenicity experiment was established with five oomycete treatments, three putatively native Phytophthora species, the invasive P. cinnamomi, and Pythium irregulare, to determine the damping‐off host range in selected plant species from a hyper‐diverse Mediterranean‐type ecosystem. Additionally, plant and seed traits were analysed to determine if they were correlated with susceptibility to pre‐emergent damping‐off. Phytophthora arenaria was the only putatively native generalist damping‐off pathogen, causing 12 of 19 plant species to experience significantly reduced seedling emergence or survival relative to the control treatment. Pythium irregulare and the introduced P. cinnamomi caused significant damping‐off for 12 and 13 plant species, respectively. Plant species that were slowest to germinate and emerge were the most susceptible to pre‐emergence damping‐off caused by P. arenaria. These results suggest native and invasive Phytophthora may substantially influence the structure and diversity of natural plant communities through damping‐off. While mature plant species are the most common focus in Phytophthora research, our study indicates damping‐off should be considered to determine the full impact of these soil‐borne plant pathogens.

A study on the potential of Bacillus thuringiensis AK08 to control pathogenic fungi associated with chili plant

Colletotrichum sp. and Fusarium sp. are significant fungal plant pathogen that affect chili plants. Various techniques are employed to manage the plant pathogens, including the application of biological agents such as Bacillus thuringiensis (Bt). This study aims to evaluate the efficacy of Bt AK08 in managing Colletotrichum sp. and Fusarium sp. Bt AK08 was subjected to dual-culturing experiments with the pathogens individually. Positive controls were employed in this study, consisting of Colletotrichum sp. and Fusarium sp. that were cultivated separately on pure potato dextrose agar. Propineb supplemented growth medium was serves as a negative control. The study involved the assessment of colony diameter of Colletotrichum sp. and Fusarium sp., as well as the evaluation of the antagonism activity exhibited by Bt AK08 through antibiosis activity and hyphal lysis. The findings indicated that Bt AK08 did not exhibit any antibiosis action since it did not result in a reduction in the colony diameter of the plant pathogenic fungus. However, we observed the breakdown of the hypha of the fungi. The present discovery suggests that Bt AK08 has promise as a potential agent for the management of Colletotrichum sp. and Fusarium sp. Hence, additional investigation is necessary to maximize its potential.

Soil microbial communities along elevational gradients in the Madrean Sky Islands.

The Madrean Sky Islands are mountain ranges isolated by a 'desert sea'. This area is a biodiversity hotspot currently threatened by climate change. Here, we studied soil microbial communities along elevational gradients in eight Madrean Sky Islands in southeastern Arizona (USA). Our results showed that while elevational microbial richness gradients were weak and not consistent across different mountains, soil properties strongly influenced microbial community composition (overall composition and the abundance of key functional groups) along elevational gradients. In particular, warming is associated with a higher abundance of soil-borne fungal plant pathogens that concomitantly might facilitate upward elevational shifts of plant species released from negative plant-soil feedbacks. Furthermore, projected warming and drought in the area aggravated by anthropogenic nitrogen deposition on mountain tops (and thus, decreasing nitrogen limitation) can enhance a shift from ectomycorrhizal to arbuscular mycorrhizal fungi. Overall, these results indicate that climate change effects on plant-soil interactions might have profound ecosystem consequences.

Plant community diversity alters the response of ecosystem multifunctionality to multiple global change factors.

Biodiversity is considered important to the mitigation of global change impacts on ecosystem multifunctionality in terrestrial ecosystems. However, potential mechanisms through which biodiversity maintains ecosystem multifunctionality under global change remain unclear. We grew 132 plant communities with two levels of plant diversity, crossed with treatments based on 10 global change factors (nitrogen deposition, soil salinity, drought, plant invasion, simulated grazing, oil pollution, plastics pollution, antibiotics pollution, heavy metal pollution, and pesticide pollution). All global change factors negatively impacted ecosystem multifunctionality, but negative impacts were stronger in high compared with low diversity plant communities. We explored potential mechanisms for this unexpected result, finding that the inhibition of selection effects (i.e., selection for plant species associated with high ecosystem functioning) contributed to sensitivity of ecosystem multifunctionality to global change. Specifically, global change factors decreased the abundance of novel functional plants (i.e., legumes) in high but not low diversity plant communities. The negative impacts of global change on ecosystem multifunctionality were also mediated by increased relative abundance of fungal plant pathogens (identified from metabarcoding of soil samples) and their negative relationship with the abundance of novel functional plants. Taken together, our experiment highlights the importance of protecting high diversity plant communities and legumes, and managing fungal pathogens, to the maintenance of ecosystem multifunctionality in the face of complex global change.

Molecular characterization of a novel narnavirus infecting the phytopathogenic fungus Botryosphaeria dothidea.

Here, a novel mycovirus, Botryosphaeria dothidea narnavirus 5 (BdNV5), was discovered in the plant-pathogenic fungus Botryosphaeria dothidea strain ZM210167-1. The BdNV5 genome sequence is 2,397 nucleotides (nt) in length and contains a putative open reading frame (ORF) encoding an RNA-dependent RNA polymerase (RdRp) with a molecular mass of 72.77 kDa. A BLASTp search using the RdRp amino acid (aa) sequence showed that it was most similar to the RdRp of Botryosphaeria dothidea narnavirus 4 (42.35%). In a phylogenetic tree based on RdRp aa sequences, BdNV5 clustered with members of the family Narnaviridae. BdNV5 is thus a novel member of the family Narnaviridae infecting the phytopathogenic fungus B. dothidea.

Distinct genomic contexts predict gene presence-absence variation in different pathotypes of Magnaporthe oryzae.

Fungi use the accessory gene content of their pangenomes to adapt to their environments. While gene presence-absence variation contributes to shaping accessory gene reservoirs, the genomic contexts that shape these events remain unclear. Since pangenome studies are typically species-wide and do not analyze different populations separately, it is yet to be uncovered whether presence-absence variation patterns and mechanisms are consistent across populations. Fungal plant pathogens are useful models for studying presence-absence variation because they rely on it to adapt to their hosts, and members of a species often infect distinct hosts. We analyzed gene presence-absence variation in the blast fungus, Magnaporthe oryzae (syn. Pyricularia oryzae), and found that presence-absence variation genes involved in host-pathogen and microbe-microbe interactions may drive the adaptation of the fungus to its environment. We then analyzed genomic and epigenomic features of presence-absence variation and observed that proximity to transposable elements, gene GC content, gene length, expression level in the host, and histone H3K27me3 marks were different between presence-absence variation genes and conserved genes. We used these features to construct a model that was able to predict whether a gene is likely to experience presence-absence variation with high precision (86.06%) and recall (92.88%) in M. oryzae. Finally, we found that presence-absence variation genes in the rice and wheat pathotypes of M. oryzae differed in their number and their genomic context. Our results suggest that genomic and epigenomic features of gene presence-absence variation can be used to better understand and predict fungal pangenome evolution. We also show that substantial intra-species variation can exist in these features.

Analysis of five near-complete genome assemblies of the tomato pathogen Cladosporium fulvum uncovers additional accessory chromosomes and structural variations induced by transposable elements effecting the loss of avirulence genes

BackgroundFungal plant pathogens have dynamic genomes that allow them to rapidly adapt to adverse conditions and overcome host resistance. One way by which this dynamic genome plasticity is expressed is through effector gene loss, which enables plant pathogens to overcome recognition by cognate resistance genes in the host. However, the exact nature of these loses remains elusive in many fungi. This includes the tomato pathogen Cladosporium fulvum, which is the first fungal plant pathogen from which avirulence (Avr) genes were ever cloned and in which loss of Avr genes is often reported as a means of overcoming recognition by cognate tomato Cf resistance genes. A recent near-complete reference genome assembly of C. fulvum isolate Race 5 revealed a compartmentalized genome architecture and the presence of an accessory chromosome, thereby creating a basis for studying genome plasticity in fungal plant pathogens and its impact on avirulence genes.ResultsHere, we obtained near-complete genome assemblies of four additional C. fulvum isolates. The genome assemblies had similar sizes (66.96 to 67.78 Mb), number of predicted genes (14,895 to 14,981), and estimated completeness (98.8 to 98.9%). Comparative analysis that included the genome of isolate Race 5 revealed high levels of synteny and colinearity, which extended to the density and distribution of repetitive elements and of repeat-induced point (RIP) mutations across homologous chromosomes. Nonetheless, structural variations, likely mediated by transposable elements and effecting the deletion of the avirulence genes Avr4E, Avr5, and Avr9, were also identified. The isolates further shared a core set of 13 chromosomes, but two accessory chromosomes were identified as well. Accessory chromosomes were significantly smaller in size, and one carried pseudogenized copies of two effector genes. Whole-genome alignments further revealed genomic islands of near-zero nucleotide diversity interspersed with islands of high nucleotide diversity that co-localized with repeat-rich regions. These regions were likely generated by RIP, which generally asymmetrically affected the genome of C. fulvum.ConclusionsOur results reveal new evolutionary aspects of the C. fulvum genome and provide new insights on the importance of genomic structural variations in overcoming host resistance in fungal plant pathogens.

Monitoring the phenology of plant pathogenic fungi: why and how?

Phenology is a key adaptive trait of organisms, shaping biotic interactions in response to the environment. It has emerged as a critical topic with implications for societal and economic concerns due to the effects of climate change on species' phenological patterns. Fungi play essential roles in ecosystems, and plant pathogenic fungi have significant impacts on global food security. However, the phenology of plant pathogenic fungi, which form a huge and diverse clade of organisms, has received limited attention in the literature. This diversity may have limited the use of a common language for comparisons and the integration of phenological data for these taxonomic groups. Here, we delve into the concept of 'phenology' as applied to plant pathogenic fungi and explore the potential drivers of their phenology, including environmental factors and the host plant. We present the PhenoFun scale, a phenological scoring system suitable for use with all fungi and fungus-like plant pathogens. It offers a standardised and common tool for scientists studying the presence, absence, or predominance of a particular phase, the speed of phenological phase succession, and the synchronism shift between pathogenic fungi and their host plants, across a wide range of environments and ecosystems. The application of the concept of 'phenology' to plant pathogenic fungi and the use of a phenological scoring system involves focusing on the interacting processes between the pathogenic fungi, their hosts, and their biological, physical, and chemical environment, occurring during the life cycle of the pathogen. The goal is to deconstruct the processes involved according to a pattern orchestrated by the fungus's phenology. Such an approach will improve our understanding of the ecology and evolution of such organisms, help to understand and anticipate plant disease epidemics and their future evolution, and make it possible to optimise management models, and to encourage the adoption of cropping practices designed from this phenological perspective.

Emerging roles of plant microRNAs during Colletotrichum spp. infection.

This review provides valuable insights into plant molecular regulatory mechanisms during fungus attacks, highlighting potential miRNA candidates for future disease management. Plant defense responses to biotic stress involve intricate regulatory mechanisms, including post-transcriptional regulation of genes mediated by microRNAs (miRNAs). These small RNAs play a vital role in the plant's innate immune system, defending against viral, bacterial, and fungal attacks. Among the plant pathogenic fungi, Colletotrichum spp. are notorious for causing anthracnose, a devastating disease affecting economically important crops worldwide. Understanding the molecular machinery underlying the plant immune response to Colletotrichum spp. is crucial for developing tools to reduce production losses. In this comprehensive review, we examine the current understanding of miRNAs associated with plant defense against Colletotrichum spp. We summarize the modulation patterns of miRNAs and their respective target genes. Depending on the function of their targets, miRNAs can either contribute to host resistance or susceptibility. We explore the multifaceted roles of miRNAs during Colletotrichum infection, including their involvement in R-gene-dependent immune system responses, hormone-dependent defense mechanisms, secondary metabolic pathways, methylation regulation, and biosynthesis of other classes of small RNAs. Furthermore, we employ an integrative approach to correlate the identified miRNAs with various strategies and distinct phases of fungal infection. This study provides valuable insights into the current understanding of plant miRNAs and their regulatory mechanisms during fungus attacks.

Novel Pyrazole Acyl(thio)urea Derivatives Containing a Biphenyl Scaffold as Potential Succinate Dehydrogenase Inhibitors: Design, Synthesis, Fungicidal Activity, and SAR.

As part of a program to discover novel succinate dehydrogenase inhibitor fungicides, a series of new pyrazole acyl(thio)urea compounds containing a diphenyl motif were designed and synthesized. Their structures were confirmed by 1H NMR, HRMS, and single X-ray crystal diffraction analysis. Most of these compounds possessed excellent activity against 10 fungal plant pathogens at 50 μg mL-1, especially against Rhizoctonia solani, Alternaria solani, Sclerotinia sclerotiorum, Botrytis cinerea, and Cercospora arachidicola. Interestingly, compounds 3-(difluoromethyl)-1-methyl-N-((3',4',5'-trifluoro-[1,1'-biphenyl]-2-yl)carbamoyl)-1H-pyrazole-4-carboxamide (9b, EC50 = 0.97 ± 0.18 μg mL-1), 1,3-dimethyl-N-((3',4',5'-trifluoro-[1,1'-biphenyl]-2-yl)carbamoyl)-1H-pyrazole-4-carboxamide (9a, EC50 = 2.63 ± 0.41 μg mL-1), and N-((4'-chloro-[1,1'-biphenyl]-2-yl)carbamoyl)-1,3-dimethyl-1H-pyrazole-4-carboxamide (9g, EC50 = 1.31 ± 0.15 μg mL-1) exhibited activities against S. sclerotiorum that were better than the commercial fungicide bixafen (EC50 = 9.15 ± 0.05 μg mL-1) and similar to the positive control fluxapyroxad (EC50 = 0.71 ± 0.11 μg mL-1). These compounds were not significantly phytotoxic to monocotyledonous and dicotyledonous plants. Structure-activity relationships (SAR) are discussed by substituent effects/molecular docking, and density functional theory analysis indicated that these compounds are succinate dehydrogenase inhibitors.

An Efficient Homologous Recombination-Based In Situ Protein-Labeling Method in Verticillium dahliae.

Accurate determination of protein localization, levels, or protein-protein interactions is pivotal for the study of their function, and in situ protein labeling via homologous recombination has emerged as a critical tool in many organisms. While this approach has been refined in various model fungi, the study of protein function in most plant pathogens has predominantly relied on ex situ or overexpression manipulations. To dissect the molecular mechanisms of development and infection for Verticillium dahliae, a formidable plant pathogen responsible for vascular wilt diseases, we have established a robust, homologous recombination-based in situ protein labeling strategy in this organism. Utilizing Agrobacterium tumefaciens-mediated transformation (ATMT), this methodology facilitates the precise tagging of specific proteins at their C-termini with epitopes, such as GFP and Flag, within the native context of V. dahliae. We demonstrate the efficacy of our approach through the in situ labeling of VdCf2 and VdDMM2, followed by subsequent confirmation via subcellular localization and protein-level analyses. Our findings confirm the applicability of homologous recombination for in situ protein labeling in V. dahliae and suggest its potential utility across a broad spectrum of filamentous fungi. This labeling method stands to significantly advance the field of functional genomics in plant pathogenic fungi, offering a versatile and powerful tool for the elucidation of protein function.

ANTAGONISTIC ACTIVITY OF ENDOPHYTIC FUNGI ISOLATED FROM ALOE VERA LEAVES AGAINST SOME PLANT PATHOGENIC FUNGI

The present study was aimed to test the antagonistic activity of endophytic fungi isolated from Aloe vera leaves against a number of plant-pathogenic fungi. The results showed that the highest antagonistic activity was exerted by Penicillium chermesinum against the pathogenic fungus Rhizoctonia solani, with an inhibition rate of 78.57%. Also, Talaromyces verruculosus and P. chermesinum showed their highest antagonistic activities against pathogenic fungus Fusarium 1 with inhibition rates of 61.79% and 61.53%, respectively, while T. verruculosus showed an inhibition rate of 62.91% against the pathogenic fungus Fusarium 2. Most of the endophytic fungi showed the least percentage of inhibition against Macrophomina phaseolina compared to the rest of the pathogenic fungi. The fungal filtrates showed a concentration-dependent inhibition rate against the plant pathogens, with a range of 0.00-48.13%. The highest inhibitory activity of Aspergillus niger was recorded at a concentration of 60% against Fusarium 2, R. solani, and Fusarium 1, with rates of 48.13, 37.39, and 36.66%, respectively. The results also showed the ineffectiveness of all fungal filtrates against the pathogenic fungus M. phaseolina. Chemical analysis of the filtrates of the endophytic fungi which showed antagonistic activity against pathogenic fungi was also conducted by using GC-MS. The results showed the presence of effective compounds with biological effects, such as Pentadecanoic acid, Oleic Acid, Limonene, cis-Vaccenic acid, Hexanedioic acid, bis(2-ethylhexyl) ester, Cycloheptasiloxane, and tetracamethyl-.

Codon Optimization Enables the Geneticin Resistance Gene to Be Applied Efficiently to the Genetic Manipulation of the Plant Pathogenic Fungus Botrytis cinerea.

Botrytis cinerea can infect almost all of the important horticultural crops and cause severe economic losses globally every year. Modifying candidate genes and studying the phenotypic changes are among the most effective ways to unravel the pathogenic mechanism of this crop killer. However, few effective positive selection markers are used for B. cinerea genetic transformation, which limits multiple modifications to the genome, especially genes involving redundant functions. Here, we optimized a geneticin resistance gene, BcNPTII, based on the codon usage preference of B. cinerea. We found that BcNPTII can greatly increase the transformation efficiency of B. cinerea under G418 selection, with approximately 30 times higher efficiency than that of NPTII, which is applied efficiently to transform Magnaporthe oryzae. Using the gene replacement method, we successfully knocked out the second gene BOT2, with BcNPTII as the selection marker, from the mutant ΔoahA, in which OAHA was first replaced by the hygromycin resistance gene HPH in a field strain. We obtained the double knockout mutant ΔoahA Δbot2. Our data show that the codon-optimized BcNPTII is an efficient positive selection marker for B. cinerea transformation and can be used for various genetic manipulations in B. cinerea, including field wild-type strains.

Effects of microplastic polystyrene, simulated acid rain and arbuscular mycorrhizal fungi on Trifolium repens growth and soil microbial community composition

Microplastic pollution is a global and ubiquitous environmental problem in the oceans as well as in the terrestrial environment. We examined the fate of polystyrene (PS) beads in experimental soil in the presence and absence of symbiotic arbuscular mycorrhizal fungi (AMF) and simulated acid rain to determine whether combinations of these three factors interact to alter growth of the white clover Trifolium repens. We found that PS, simulated acid rain or AMF added singly to soil did not alter T. repens growth or yields. In contrast, PS and AMF together significantly reduced shoot biomass while simulated acid rain and PS together significantly reduced available soil phosphorus independent of AMF presence. PS, AMF and simulated acid rain together significantly reduced soil NO3–-N. AMF added singly also enriched for beneficial soil bacteria of the genus Solirubrobacter while PS combined with AMF significantly enriched the potential plant pathogenic fungus Spiromastix spp. AMF innoculated with PS increased the abundance of soil hydrocarbon degraders independent of the presence of simulated acid rain. In addition, the abundance of soil nitrate reducers was increased by the presence of PS especially in the presence of AMF and simulated acid rain. Moreover, the latter increased the abundance of soil pathogens within the fungal community including antibiotic producers. These findings indicate that the coexistence of microplastics, acid rain and AMF may exacerbate the adverse effects of microplastics on soil and plant health.

A circular economy approach: A new formulation based on a lemon peel medium activated with lactobacilli for sustainable control of post-harvest fungal rots in fresh citrus fruit

The aim of the study was to develop an effective bio-formulation for preventing post-harvest fungal rots in fresh citrus fruit through a multi-step process that includes isolation and characterization of lactic acid bacteria (LABs) from citrus fruit peel, selection of LAB strains with high antifungal activity, chemical characterization of cell free supernatants (CFS), formulation of a lemon peel powdery-based medium (LM) activated with LAB fermentates, chemical characterization of fermented LM, and evaluation of the efficacy of the new bio-formulation against blue mold. Thirteen LABs were recovered from the rind of citrus fruit and identified by the peptide mass fingerprinting method. The antifungal activity of LABs, isolated from citrus fruit, as well as cell free supernatants (CFSs), obtained from their liquid cultures, was tested against diverse plant pathogenic fungi and oomycetes, using the dual-culture overlay and the diffusion agar assays, respectively. Two isolates designated as N3B2 and M2B2, both identified as Lactiplantibacillus plantarum, were selected among the others for their relevant antifungal activity. Both isolates showed a broad spectrum antagonistic activity comprising also major postharvest pathogens of citrus fruit, such as Penicillium digitatum and P. italicum, the causal agents of green and blue moulds, respectively, Alternaria alternata, Colletotrichum gloeosporioides, C. karsti, Phytophthora citrophthora and Ph. nicotianae. The N3B2 and M2B2 isolates were used as starter cultures to ferment a lemon peel powder medium enriched with a nutrient water solution (LM). The two formulations obtained by fermenting LM with the N3B2 and M2B2 isolates showed a strong in vitro inhibitory activity on the same broad range of pathogens used in the preliminary screening of LABs. Moreover, the two LM-based formulations reduced the severity of blue mold infection and inhibited the sporulation of P. italicum on artificially inoculated lemon fruit. The chemical analysis of LM-based bioformulations revealed their antifungal activity was very probably due to the LAB-derived acidic components, including lactic, acetic, DL-3-phenyllactic, 3-4-dihydroxyhydrocinnamic, salicylic acid vanillic acids. These innovative LM-based bioformulations activated with LAB-derived antifungal compounds will be exploited as edible and biodegradable fruit coatings to prolong the shelf-life and prevent post-harvest rots of fresh citrus fruit.

The soil-borne white root rot pathogen Rosellinia necatrix expresses antimicrobial proteins during host colonization.

Rosellinia necatrix is a prevalent soil-borne plant-pathogenic fungus that is the causal agent of white root rot disease in a broad range of host plants. The limited availability of genomic resources for R. necatrix has complicated a thorough understanding of its infection biology. Here, we sequenced nine R. necatrix strains with Oxford Nanopore sequencing technology, and with DNA proximity ligation we generated a gapless assembly of one of the genomes into ten chromosomes. Whereas many filamentous pathogens display a so-called two-speed genome with more dynamic and more conserved compartments, the R. necatrix genome does not display such genome compartmentalization. It has recently been proposed that fungal plant pathogens may employ effectors with antimicrobial activity to manipulate the host microbiota to promote infection. In the predicted secretome of R. necatrix, 26 putative antimicrobial effector proteins were identified, nine of which are expressed during plant colonization. Two of the candidates were tested, both of which were found to possess selective antimicrobial activity. Intriguingly, some of the inhibited bacteria are antagonists of R. necatrix growth in vitro and can alleviate R. necatrix infection on cotton plants. Collectively, our data show that R. necatrix encodes antimicrobials that are expressed during host colonization and that may contribute to modulation of host-associated microbiota to stimulate disease development.