Group Of Fungi Research Articles

Mycorrhizal inoculation alters rhizosphere fungal community and root morphology to improve drought tolerance of resource-acquisitive but not resource-conservative Quercus species

The mutualistic association between mycorrhizal fungi and plants is well known to improve plant drought resistance. However, the influence of external inoculants on the interactions between soil microbial communities and plant functional traits and how these interactions improve plant drought tolerance under drought stress remain unclear. We conducted a pot inoculation experiment to assess the effect of two inoculated fungal strains (Clitopolius hobsonii NL-19 and C. sp. HSL-YX-7-A) on morphological traits and rhizosphere fungal communities of eight Quercus species seedlings. Plant and soil fungal traits were measured 2 months after inoculation and then underwent a short-term (33 days) drought rewetting treatment. The biomass of all tree species reduced significantly under drought stress followed by rewetting (drought treatment) compared with that in the control treatment (well-watered); however, inoculated mycorrhizal fungi (drought + mycorrhizal inoculation treatment) increased the biomass of five Quercus species (growth-promoting species (GPS) exhibiting a significant increase in biomass under mycorrhizal inoculation treatment than under the uninoculated treatment during drought stress, characterized by a resource-use acquisitive strategy) and had no effect on the other three Quercus species (non-growth-promoting species (NGPS) exhibiting no significant difference in biomass between mycorrhizal inoculation and uninoculated treatments during drought stress, characterized by a resource-use conservative strategy). The leaf traits of the two species groups (GPS and NGPS) varied little among the three treatments. The values of most root traits (e.g., specific root length and root length) of GPS increased significantly under drought and drought + mycorrhizal inoculation treatments compared with those in the control, whereas relatively minor variations were observed in NGPS among the three treatments. The fungal community composition and functional groups (primary trophic modes) in the drought treatment were altered for NGPS but not for GPS; additionally, they changed in the drought + mycorrhizal inoculation treatment for GPS but not for NGPS when compared with those in the drought treatment. Furthermore, the drought tolerance of GPS was improved directly by fungal functional groups (i.e., Pathotroph-Saprotroph- Symbiotrophs proliferation) and indirectly by root traits (e.g., increased specific root length), whereas NGPS may adapt to drought stress through other pathways (e.g., physiological and biochemical regulation). Overall, drought and mycorrhizal inoculation affected the root traits and fungal community structure of Quercus seedlings, which rely on plant resource-use strategies. Our results provide new insights into the relationship between plant resource-use strategies and soil microbes for improving plant performance under drought stress.

Functional characterization of two survival factor 1 genes in Mucor lusitanicus.

Mucor lusitanicus is a widely used model organism to study various biological processes in the basal fungal group Mucorales. Several members of this group can be agents of mucormycosis, an opportunistic fungal infection, which is associated with high mortality, rapid progression, and wide resistance to the commonly used antifungal agents. Svf1 proteins have so far only been identified in fungi, where they have been involved in pathogenicity and resistance to antifungal agents in many cases. Only a limited number of factors affecting the stress response, antifungal resistance, and virulence of Mucorales fungi have been revealed. Elucidating the function of a fungus-specific protein that may regulate these processes may bring us closer to understanding the pathogenesis of these fungi.

Profiling of the Citrus Leaf Endophytic Mycobiota Reveals Abundant Pathogen-Related Fungal Groups.

Plant endophytic microbial communities consist of many latent plant pathogens and, also, many pathogen-related species with reduced virulence. Though with a long history of co-evolution, the diversity and composition of the endophytic mycobiota, especially the pathogen-related fungal groups, has been under-investigated in Citrus (C.). Based on the amplicon sequencing of fungal internal transcribed spacer (ITS), the leaf endophytic mycobiota were profiled on citrus varieties from different citrus-producing regions. The pomelo variety shared significantly distinctive leaf mycobiota when compared to the mandarin and sweet orange; these conform to their host genetic relationships. In addition, a data set of 241 citrus-related fungi, including 171 (71%) pathogens and potential pathogens, was summarized from previous studies. Under the criteria of local BLAST (covered ITS nucleotide ≥ 150 bp, sequence identity ≥ 99%), a total of 935 fungal operational taxonomic units (OTUs) were assigned to 62 pathogen-related fungal groups, representing 14.9% of the relative abundance in the whole community. Of which, the top groups consisted of Colletotrichum gloeosporioides (mean relative abundance, 4.3%), Co. citricola and Co. karstii (2.7%), Zasmidium citri-griseum (2.4%), and Z. fructigenum (1.4%). At the genus level, the ratio of the pathogen-related fungal groups in 64% of fungal genera (16 out of 25) exceeded 50%, which are the solely or mainly occurring fungi of their genus in citrus. Our study suggests that the leaf endophytic compartment may be an important place for the growth of latent pathogens.

Everywhere we look around: Aerial eDNA to capture fungal diversity

AbstractResearch Highlight discussing: Runnel, K., Lõhmus, P., Küngas, K., Marmor‐Ohtla, L., Palo, A., Pütsepp, G., Tamm, H., Tammekänd, I., & Lõhmus, A. (2024). Aerial eDNA contributes vital information for fungal biodiversity assessment. Journal of Applied Ecology, https://doi.org/10.1111/1365‐2664.14691. Fungi play key roles in ecosystems, yet it is not clear how best to capture their diversity or monitor their presence, especially for those species of particular conservation concern. In this issue of the Journal of Applied Ecology Runnel et al. address this problem by comparing different methodologies to estimate the diversity of lichen‐forming fungi and wood‐inhabiting basidiomycetes at a forest stand scale. Pairing aerial eDNA sampling with visual observation‐based surveys better captured the full spectrum of fungal diversity, including cryptic species and those of particular conservation interest. Certain fungal groups that are underrepresented in air samples might be better captured by sampling eDNA directly from wood or soil, but visual surveys should be considered as a more cost‐effective complementary method at least at a local scale. Their results highlight the importance of using multiple methods simultaneously in biodiversity assessments and the need for standardized methods to study and monitor fungal diversity.

Contribution of gut microbiota to biodegradation of polystyrene in Tenebrio molitor larvae: Microbiome under antibiotic suppression of Gram-positive, Gram-negative, and fungal microbes

The discovery of plastic biodegradation by insects such as Tenebrio molitor larvae has been well known, however, understanding of the roles of larval gut microorganisms is still very limited. The contribution of the gut microbes belonging to respective Gram-positive (G+), Gram-negative (G−), and fungal (F) groups remains unclear. In this study, we tested polystyrene (PS) biodegradation by T. molitor larvae under three selective antibiotics i.e., gentamicin sulfate (GMS) against G− bacteria, ampicillin (AMP) against G+ bacteria and nystatin (NS) against fungi. The larvae consumed and biodegraded PS foams with Mn 86.381 kDa and Mw 181.176 kDa under antibiotic suppressions at reduced rates versus control (CK) with a sequence of CK>GMS>AMP>NS group. Specifically, only NS group showed a significant decreased in consumption compared to the control. The gut microbial counts decreased with GMS, AMP, or NS addition during the PS feeding. The respective gut microbial counts decreased by 103 to 104 with GMS, AMP, or NS addition PS feeding. Analyses of DSC, TGA, FTIR confirmed oxidation and biodegradation in the presence of antibiotics. The ingested PS polymers were depolymerized and mass reduction with negative influence in the order of NS<AMP<GMS. The negative impact of antibiotic suppression on PS biodegradation process was as follows: anti-fungi reagent > anti-G+ bacteria > anti- G− bacteria. Changes in chemical functional groups are probably related to certain gut microbes, such as the fungal genus of Candida, and bacterial genera of unclassified Enterobacteriaceae and Lactobacillus. Our findings provided new insights into the mechanisms of the biodegradation of plastics in insects.

A Chimeric ORF Fusion Phenotypic Reporter for Cryptococcus neoformans.

The plethora of genome sequences produced in the postgenomic age has not resolved many of our most pressing biological questions. Correlating gene expression with an interrogatable and easily observable characteristic such as the surrogate phenotype conferred by a reporter gene is a valuable approach to gaining insight into gene function. Many reporters including lacZ, amdS, and the fluorescent proteins mRuby3 and mNeonGreen have been used across all manners of organisms. Described here is an investigation into the creation of a robust, synthetic, fusion reporter system for Cryptococcus neoformans that combines some of the most useful fluorophores available in this system with the versatility of the counter-selectable nature of amdS. The reporters generated include multiple composition and orientation variants, all of which were investigated for differences in expression. Evaluation of known promoters from the TEF1 and GAL7 genes was undertaken, elucidating novel expression tendencies of these biologically relevant C. neoformans regulators of transcription. Smaller than lacZ but providing multiple useful surrogate phenotypes for interrogation, the fusion ORF serves as a superior whole-cell assay compared to traditional systems. Ultimately, the work described here bolsters the array of relevant genetic tools that may be employed in furthering manipulation and understanding of the WHO fungal priority group pathogen C. neoformans.

Shifts in fungal community diversity and potential function under natural forest succession and planted forest restoration in the Kunyu Mountains, East China.

Soil fungi participate in various ecosystem processes and are important factors driving the restoration of degraded forests. However, little is known about the changes in fungal diversity and potential functions under the development of different vegetation types during natural (secondary forest succession) and anthropogenic (reforestation) forest restoration. In this study, we selected typical forest succession sequences (including Pinus densiflora Siebold & Zucc., pine-broadleaf mixed forest of P. densiflora and Quercus acutissima Carruth., and Q. acutissima), as well as natural secondary deciduous broadleaved mixed forests and planted forests of Robinia pseudoacacia on Kunyu Mountain for analysis. We used ITS rRNA gene sequencing to characterize fungal communities and used the FUNGuild database to predict fungal functional groups. The results showed that forest succession affected fungal β-diversity, but not the α-diversity. There was a significant increase in Basidiomycota and a decrease in Ascomycota in the later successional stage, accompanied by an increase in the functional groups of ectomycorrhizal fungi (ECM). Conversely, planted forests exhibited decreased fungal α-diversity and altered community compositions, characterized by fewer Basidiomycota and more Ascomycota and Mucoromycota. Planted forests led to a decrease in the relative abundances of ECM and an increase in animal pathogens. The TK content was the major factor explaining the distinction in fungal communities among the three successional stages, whereas pH, AP, and NH4 + were the major factors explaining community variations between natural and planted forests. Changes in vegetation types significantly affected the diversity and functional groups of soil fungal communities during forest succession and reforestation, providing key insights for forest ecosystem management in temperate forests.

A Retrospective Analysis of Micafungin Prophylaxis in Children Under 12 Years Undergoing Chemotherapy or Hematopoietic Stem Cell Transplantation.

Literature is limited regarding ideal micafungin dosing in pediatric patients with hematologic malignancies receiving chemotherapy or hematopoietic stem cell transplantation. Micafungin is an intravenous echinocandin with activity against Candida and Aspergillus species and has a favorable safety profile compared with other antifungal classes. Our objective was to evaluate the breakthrough invasive fungal infection (IFI) rate in pediatric patients who received a prophylactic micafungin course at our institution. A single-center, retrospective study was conducted between January 1, 2011, and July 31, 2017, to determine the IFI rate in patients receiving micafungin prophylaxis. Patients with suspected IFI were evaluated for probable or proven infection based on European Organization for Research and Treatment of Cancer/Invasive Fungal Infections Cooperative Group and the National Institute of Allergy and Infectious Diseases Mycoses Study Group Consensus Group invasive fungal disease definitions. Statistical analyses were descriptive. A total of 170 prophylactic micafungin courses from 129 unique patients ages <12 years at a median dose of 3 mg/kg daily were identified. The rate of probable or proven breakthrough IFIs was 2.4% as determined by clinical, radiologic, microbiologic, and histopathologic criteria. A low rate of breakthrough IFI was seen with micafungin prophylaxis that is consistent with prior published adult hematopoietic stem cell transplantation studies. Micafungin was well tolerated, with liver function test elevations being transient in most cases and thought to be related to alternative factors.

Diversity of Fungal Community and Its Constraints in the Yifeng Lithium Mines, Eastern China.

It is well accepted that biodiversity and ecosystem functions are strongly shaped by environmental conditions; however, relatively little is known about how they depend on the mineralogical assemblage of local environments, especially in mines. This study aims to reveal the diversity characteristics of the fungal community in the surface of granite lithium ores and their weathering products sampled from the Yifeng lithium mines in Jiangxi Province, eastern China. According to the analysis of internal transcribed spacer1 (ITS1) high-throughput sequencing, significant differences in fungal community diversity on the surface of lithium ores and their weathering products have been revealed. The operational taxonomic unit (OTU) of the ore surface and its weathering products ranged from 280 to 624, which may depend on the mineral composition as well as the degree of weathering. The community composition of each sample was significantly different at the phylum level, especially between the weathering products in Ascomycota and Basidiomycota. Although Ascomycota and Basidiomycota were the dominant fungal communities in all samples, each sample has its own distinctive fungi. The trophic modes of the fungi were more complex than that of the bacteria. 10 different fungal trophic modes and 25 dominant functional fungal groups were disclosed, and the saprophytic community was found to be the dominant group. These fungi could accelerate the decomposition of environmental organic matter in the environment by producing hydrolases and oxidases. Chytridiomycota with the function of producing and regulating secondary metabolites were the representative fungi in all samples. Our findings would provide theoretical basis and research clues for understanding the relationship between weathering of granite lithium and fungal communities.

Biogeographic and co-occurrence network differentiation of fungal communities in warm-temperate montane soils

Studying the biogeographic patterns of fungal communities across altitudinal and soil depth gradients is essential for understanding how environmental variations shape the diversity and functionality of these complex ecological assemblages. Here, we evaluated the response and assembly patterns of fungal communities to altitude and soil depth, and the co-occurrence patterns influencing soil fungal metabolic preferences on Dongling Mountain. We observed significant variations in fungal β-diversity, driven by elevation and soil depth, with climatic parameters (MAT and MAP) and nutrient concentrations (TOC, TP, and TN) serving as prominent influencers. Additionally, we found that the multiple substrate-induced respiration rate of fungi degrading various carbon substrates was diminished in high-altitude and subsurface soils compared to low-altitude and surface soils. Stochastic processes play a more important role in controlling fungal community assembly than deterministic processes, with dispersal limitation emerging as the main driver of community assembly. While greater network complexity was evident in the topsoil compared to the subsoil, both layers harbored altitude-sensitive OTUs (asOTUs) that belonging to distinct modules. Moreover, fungal groups sensitive to the same altitude exhibited similar metabolic preferences. The asOTUs designated for lower altitude areas favored unstable carbon substrates (glucose and sucrose), while those designated as higher altitude areas exhibited a preference for recalcitrant carbon (xylan and lignin). This evidence suggests that soil fungal communities respond to environmental changes by trading off their life strategies and metabolic characteristics.

Climate regulates the effect of land‐use change on the diversity of soil microbial functional groups and soil multifunctionality

Abstract Although studies have explored how soil microbial diversity and soil multifunctionality respond to land‐use change at local scales, they have rarely been explored at larger scales and across different climatic and soil environmental conditions. By sampling 40 paired sites of land‐use change from natural forests to agricultural lands (including croplands and orchards) along the middle and lower Yangtze River, combined with a global meta‐analysis, we investigated the effects of land‐use change and climate on the alpha and beta diversity of soil bacterial and fungal functional groups (FGs) and their associated soil multifunctionality at a regional scale. Our results showed that land‐use change strongly changed the diversity of soil bacterial and fungal FGs and decreased multifunctionality, which was supported by our meta‐analysis at a global scale. Direct effects of land‐use change and climate and their interaction, together with changes in soil environmental variables, were the main determinants of the land‐use change‐induced changes in the diversity of soil bacterial or fungal FGs. The land‐use change‐induced decrease in multifunctionality was mainly associated with the direct effect of forest conversion, soil fertility and diversity of fungal FGs. Furthermore, climate also regulated the effects of land‐use change on multifunctionality by affecting soil fertility and fungal FGs diversity along the Yangtze River. Synthesis and applications. Taken together, our findings highlight the important effects of land‐use change, climate and their interactions on microbial diversity and multifunctionality and suggest that effective land‐use management and climate change mitigation strategies should be adopted to protect biodiversity and ecosystem function in the Yangtze River Basin.

Airborne DNA reveals predictable spatial and seasonal dynamics of fungi

Fungi are among the most diverse and ecologically important kingdoms in life. However, the distributional ranges of fungi remain largely unknown as do the ecological mechanisms that shape their distributions1,2. To provide an integrated view of the spatial and seasonal dynamics of fungi, we implemented a globally distributed standardized aerial sampling of fungal spores3. The vast majority of operational taxonomic units were detected within only one climatic zone, and the spatiotemporal patterns of species richness and community composition were mostly explained by annual mean air temperature. Tropical regions hosted the highest fungal diversity except for lichenized, ericoid mycorrhizal and ectomycorrhizal fungi, which reached their peak diversity in temperate regions. The sensitivity in climatic responses was associated with phylogenetic relatedness, suggesting that large-scale distributions of some fungal groups are partially constrained by their ancestral niche. There was a strong phylogenetic signal in seasonal sensitivity, suggesting that some groups of fungi have retained their ancestral trait of sporulating for only a short period. Overall, our results show that the hyperdiverse kingdom of fungi follows globally highly predictable spatial and temporal dynamics, with seasonality in both species richness and community composition increasing with latitude. Our study reports patterns resembling those described for other major groups of organisms, thus making a major contribution to the long-standing debate on whether organisms with a microbial lifestyle follow the global biodiversity paradigms known for macroorganisms4,5.

Temporal Variations in Community Structure and Function of Root-associated Fungi Associated with Pinus sylvestris var. mongholica Plantations in the Mu Us Sandy Land

To illuminate the temporal variations in the structure and functional groups of the root-associated fungal community associated with Mongolian pine Pinus sylvestris var. mongholica plantations in the Mu Us Sandy Land, P. sylvestris var. mongholica plantations with different stand ages （23, 33, and 44 a） were targeted. The community compositions and main drivers of root-associated fungi at different months and stand ages were identified using the Illumina high-throughput sequencing method. The results indicated that： ① There was a distinct temporal distribution in the root-associated fungal community, the sampling month had a significant effect on the diversity of root-associated fungi （P<0.05）, and the values were higher in May and July. The stand age had no significant effect on the diversity of root-associated fungi （P&gt;0.05） and decreased gradually with increasing stand age. ② The dominant phylum of the root-associated fungal community was Ascomycota. The relative abundance of fungal function groups was different within each month and stand age, and the dominant groups were saprotroph-symbiotroph, undefined saprotroph, and ectomycorrhizal fungi. The indicator genera of ectomycorrhizal fungi in May, July, and September were Melanoleuca, Amphinema, and Tricholoma, respectively. ③ The temporal distribution of the root-associated fungal community was significantly affected by annual relative humidity, annual precipitation, soil porosity, ammonia nitrogen, annual sunshine duration, annual temperature, and soil water content （P<0.05）. Soil organic carbon content, soil porosity, annual precipitation, and annual relative humidity were the main factors that significantly affected the indicator genus of the root-associated fungal community. Our results demonstrated that the temporal distribution of the root-associated fungal community was shaped by climate and soil properties, whereas stand age contributed less. This improved information will provide a theoretical basis for the sustainable management of P. sylvestris var mongholica plantations.

Enhanced biodegradation of benzo[a]pyrene with Trametes versicolor stimulated by citric acid.

Polycyclic aromatic hydrocarbons (PAHs) are a class of persistent organic pollutants with carcinogenic, mutagenic and teratogenic effects. The white-rot fungi in the fungal group have significant degradation ability for high molecular weight organic pollutants. However, exogenous fungi are easily antagonized by indigenous microorganisms. Low molecular weight organic acids, a small molecular organic matter secreted by plants, can provide carbon sources for soil microorganisms. Combining organic acids with white rot fungi may improve the nutritional environment of fungi. In this study, immobilized Trametes versicolor was used to degrade benzo[a]pyrene in soil, and its effect on removing benzo[a]pyrene in soil mediated by different low molecular weight organic acids was investigated. The results showed that when the degradation was 35days, the removal effect of the experimental group with citric acid was the best, reaching 43.7%. The degradation effect of Trametes versicolor on benzo[a]pyrene was further investigated in the liquid medium when citric acid was added, and the effects of citric acid on the biomass, extracellular protein concentration and laccase activity of Trametes versicolor were investigated by controlling different concentrations of citric acid. In general, citric acid can act as a carbon source for Trametes versicolor and promote its extracellular protein secretion and laccase activity, thereby accelerating the mineralization of benzo[a]pyrene by Trametes versicolor. Therefore, citric acid can be used as a biostimulant in the remediation of PAHs contaminated soil with Trametes versicolor.

Response of Soil Fungal Community in Coastal Saline Soil to Short-Term Water Management Combined with Bio-Organic Fertilizer

This study aimed to elucidate the response of soil microbial communities to saline soil amelioration via biological organic fertilizer. A year-long experiment was conducted on coastal saline soil, employing water and fertilizer strategies. Three treatments were compared: dry field (control, CK), paddy field (W), and combined dry and irrigated fields with biological organic fertilizer (BW). Soil DNA was extracted and sequenced using high-throughput methods, revealing significant reductions in soil electrical conductivity (EC) and pH with W and BW treatments. Moreover, the BW treatment notably increased soil organic carbon content by 17.2%, as well as soil urease and alkaline phosphatase activity. Fungal community richness increased, with the BW treatment showing a 36% rise in the ACE index and a 24% increase in the Shannon index, while the Simpson index decreased by 59%. Dominant fungal phyla were Ascomycota, Mortierellomycota, and Basidiomycota, with Basidiomycota prevailing at the genus level. Redundancy analysis (RDA) indicated that soil pH, EC, and organic carbon were key determinants of fungal community distribution, with the BW treatment correlating negatively with pH and salt and positively with soil organic carbon (SOC). Fungal functional groups varied among treatments, with saprophytic fungi predominating, but the BW treatment showed a higher relative abundance of animal pathogenic fungi. In summary, the integration of biological organic fertilizer with flooding ameliorates soil properties and influences the changes in soil fungal community structure and function in the short term. These results could enhance the scientific basis for the efficient utilization and development of saline soil resources in coastal areas.

A Case Series of Eight Mucormycosis Patients during SARS-CoV-2 –Pandemic

The outbreak of opportunistic fungal infections such as mucormycosis has been a critical issue following coronavirus disease 19 (COVID-19). Mucormycosis is happened by the fungal group Mucorales and commonly affects immunocompromised patients. To date, COVID-19-associated mucormycosis (CAM) is being reported in several countries. It should be noted that CAM has been started in patients approximately within two to three weeks after the onset of COVID-19. However, here, in one case, fungal symptoms appeared after just one week. In patients with mucormycosis due to this enigmatic infection, the sinuses were most commonly affected, followed by the orbit, nose, and finally the brain. All cases received glucocorticoids as a part of viral therapy. Diabetes mellitus (DM) was reported in all but one case in which COVID-19 was detected, without complications, and this may be the sole predisposing agent. Therefore, in this manuscript, we reported eight cases of COVID-19-induced mucormycosis. Although one case experienced evacuation of the right eye, others discharge with promising outcomes after receiving surgical debridement and proper anti-fungal treatment including, amphotericin B, caspofungin, and posaconazole.

Performances of phosphate-solubilizing microorganisms on soil chemical properties under different soil characteristics: a meta-analysis

The addition of phosphate-solubilizing microorganisms (PSM) as biofertilizers can improve the quality of soil properties. A meta-analysis study was conducted to analyze the effect of PSM on soil properties. This meta-analysis has analyzed 20 research articles published between 1990 and 2023, which have reported the influence of PSM on soil properties. The value of effect size (ES) Hedges'd of available-P is 3.047 (p&lt;0.001), ES of available K is 2.102 (p&lt;0.001), ES of soil nitrogen (N) is 1.706 (p&lt;0.001), ES of pH is -2.738 (p&lt;0.001), ES of soil organic carbon (SOC) is 1.087 (p=0.004), ES of N-NH4 is 0.636 (p= 0.013), ES of N-NO3 is 2.643 (p&lt; 0.001), ES of phosphatase is 5.001 (p&lt; 0.001), ES of alkaline phosphatase is 22.956 (p&lt;0.001), and ES of acid phosphatase is 23.104 (p&lt;0.001). The results showed that in terms of phosphate solubility, PSM is more effective on alkaline soils with high SOC content, very high P availability, and a sandy loam texture. PSM is more effective for K solubility on acidic soils, with very high SOC content, high P availability, and a loamy texture. PSM is effective in increasing soil N with acid soil characteristics, low SOC content, moderate available P content, and clay texture. According to this study, the Penicillium fungus ranks second in the fungal group in terms of phosphate solubilization capacity after the genus Azotobacter. The genus Peronospora showed the greatest potential in increasing soil N. In contrast, Burkholderia showed the greatest effectiveness in solubilizing K.

Composition and Assembly of the Endophytic Fungal Community of Alpine Rhododendron Hosts Along Elevation Gradients

Alpine mountain ecosystems are highly sensitive to global warming and threatened by climate change. Elevation gradients are frequently used as space-for-time surrogates for climate change in mountain ecosystems due to their correspondence with climate variables over short geographic distances. However, the distribution patterns of fungal communities in perennial woody plants along elevations in this ecosystem and how elevation and host identity affect them remain unclear. In this work, we used Illumina MiSeq DNA sequencing technology to study the rhizosphere soil fungal community and root and leaf endophytic fungal community assembly of alpine Rhododendron communities across a 3,100- to 4,100-m elevation gradient on Jiaozi Mountain, Southwest China. The abundance and diversity of fungi in different compartments varied among elevation gradients and hosts. The fungal community assembly in each compartment was mainly influenced by stochastic processes. However, the contribution of homogeneous selection, dispersal limitation, and drift varied among host identities and elevations in different compartments. The diversity and composition of rhizosphere soil, root, and leaf guilds and the overall abundance of fungal functional groups tracked the Rhododendron host identity more closely than elevation did. Most indicator taxa of fungi were putative saprotrophs. These findings will improve our understanding of the maintenance of alpine Rhododendron communities along elevation gradients. [Formula: see text] Copyright © 2024 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license .

Soil fungal community structure and function response to rhizoma perennial peanut cultivars

BackgroundCrop-associated microorganisms play a crucial role in soil nutrient cycling, and crop growth, and health. Fine-scale patterns in soil microbial community diversity and composition are commonly regulated by plant species or genotype. Despite extensive reports in different crop or its cultivar effects on the microbial community, it is uncertain how rhizoma peanut (RP, Arachis glabrata Benth.), a perennial warm-season legume forage that is well-adapted in the southern USA, affects soil microbial community across different cultivars.ResultsThis study explored the influence of seven different RP cultivars on the taxonomic composition, diversity, and functional groups of soil fungal communities through a field trial in Marianna, Florida, Southern USA, using next-generation sequencing technique. Our results showed that the taxonomic diversity and composition of the fungal community differed significantly across RP cultivars. Alpha diversity (Shannon, Simpson, and Pielou’s evenness) was significantly higher in Ecoturf but lower in UF_Peace and Florigraze compared to other cultivars (p < 0.001). Phylogenetic diversity (Faith’s PD) was lowest in Latitude compared to other cultivars (p < 0.0001). The dominant phyla were Ascomycota (13.34%), Mortierellomycota (3.82%), and Basidiomycota (2.99%), which were significantly greater in Florigraze, UF_Peace, and Ecoturf, respectively. The relative abundance of Neocosmospora was markedly high (21.45%) in UF_Tito and showed large variations across cultivars. The relative abundance of the dominant genera was significantly greater in Arbrook than in other cultivars. There were also significant differences in the co-occurrence network, showing different keystone taxa and more positive correlations than the negative correlations across cultivars. FUNGuild analysis showed that the relative abundance of functional guilds including pathogenic, saprotrophic, endophytic, mycorrhizal and parasitic fungi significantly differed among cultivars. Ecoturf had the greatest relative abundance of mycorrhizal fungal group (5.10 ± 0.44), whereas UF_Peace had the greatest relative abundance of endophytic (4.52 ± 0.56) and parasitic fungi (1.67 ± 0.30) compared to other cultivars.ConclusionsOur findings provide evidence of crop cultivar’s effect in shaping fine-scale fungal community patterns in legume-based forage systems.Graphical abstract

Disease Occurrence and Climatic Factors Jointly Structure Pomelo Leaf Fungal Succession in Disturbed Agricultural Ecosystem.

For perennial plants, newly emerged organs are fresh hot spots for environmental microbes to occupy and assemble to form mature microbial communities. In the microbial community, some commensal fungi can play important roles in microbial succession, thus significantly improving host plant growth and disease resistance. However, their participating patterns in microbial assembly and succession remain largely unknown. In this study, we profiled the fungal community and found a similar fungal succession pattern of spring-emerged leaves from March to October in two pomelo orchards. Specifically, the fungal species, tracked on the old leaves, dominated the spring leaves after emergence and then decreased in relative abundance. This reduction in priority effects on the spring leaves was then followed by an increase in the number of observed species, Shannon and phylogenetic diversity indices, and the pathogen-associated fungal groups. In addition, we found that the temporal fungal succession on the spring leaves highly correlated with the disease occurrence in the orchards and with the temperature and precipitation variation from spring to summer. Of the pathogen-associated fungal groups, an increase in the relative abundance of Mycosphaerellaceae, hosting the causal agent of citrus greasy spot, correlated with the occurrence of the disease, while the relative abundance of Diaporthaceae, hosting the causal agent of melanose, was extremely low during the fungal succession. These results confirm that the two kinds of pathogen-associated fungal groups share different lifestyles on citrus, and also suggest that the study of temporal fungal succession in microbial communities can add to our understanding of the epidemiology of potential plant pathogens.