Electron Transfer Function Research Articles

Multifunctional Cytochrome c: Learning New Tricks from an Old Dog.

Cytochrome c (cyt c) is a small soluble heme protein characterized by a relatively flexible structure, particularly in the ferric form, such that it is able to sample a broad conformational space. Depending on the specific conditions, interactions, and cellular localization, different conformations may be stabilized, which differ in structure, redox properties, binding affinities, and enzymatic activity. The primary function is electron shuttling in oxidative phosphorylation, and is exerted by the so-called native cyt c in the intermembrane mitochondrial space of healthy cells. Under pro-apoptotic conditions, however, cyt c gains cardiolipin peroxidase activity, translocates into the cytosol to engage in the intrinsic apoptotic pathway, and enters the nucleus where it impedes nucleosome assembly. Other reported functions include cytosolic redox sensing and involvement in the mitochondrial oxidative folding machinery. Moreover, post-translational modifications such as nitration, phosphorylation, and sulfoxidation of specific amino acids induce alternative conformations with differential properties, at least in vitro. Similar structural and functional alterations are elicited by biologically significant electric fields and by naturally occurring mutations of human cyt c that, along with mutations at the level of the maturation system, are associated with specific diseases. Here, we summarize current knowledge and recent advances in understanding the different structural, dynamic, and thermodynamic factors that regulate the primary electron transfer function, as well as alternative functions and conformations of cyt c. Finally, we present recent technological applications of this moonlighting protein.

Prediction of Reduction Potentials of Copper Proteins with Continuum Electrostatics and Density Functional Theory.

Blue copper proteins, such as azurin, show dramatic changes in Cu2+/Cu+ reduction potential upon mutation over the full physiological range. Hence, they have important functions in electron transfer and oxidation chemistry and have applications in industrial biotechnology. The details of what determines these reduction potential changes upon mutation are still unclear. Moreover, it has been difficult to model and predict the reduction potential of azurin mutants and currently no unique procedure or workflow pattern exists. Furthermore, high‐level computational methods can be accurate but are too time consuming for practical use. In this work, a novel approach for calculating reduction potentials of azurin mutants is shown, based on a combination of continuum electrostatics, density functional theory and empirical hydrophobicity factors. Our method accurately reproduces experimental reduction potential changes of 30 mutants with respect to wildtype within experimental error and highlights the factors contributing to the reduction potential change. Finally, reduction potentials are predicted for a series of 124 new mutants that have not yet been investigated experimentally. Several mutants are identified that are located well over 10 Å from the copper center that change the reduction potential by more than 85 mV. The work shows that secondary coordination sphere mutations mostly lead to long‐range electrostatic changes and hence can be modeled accurately with continuum electrostatics.

Activation Thermodynamics and H/D Kinetic Isotope Effect of the Hox to HredH+ Transition in [FeFe] Hydrogenase.

Molecular complexes between CdSe nanocrystals and Clostridium acetobutylicum [FeFe] hydrogenase I (CaI) enabled light-driven control of electron transfer for spectroscopic detection of redox intermediates during catalytic proton reduction. Here we address the route of electron transfer from CdSe→CaI and activation thermodynamics of the initial step of proton reduction in CaI. The electron paramagnetic spectroscopy of illuminated CdSe:CaI showed how the CaI accessory FeS cluster chain (F-clusters) functions in electron transfer with CdSe. The Hox→HredH+ reduction step measured by Fourier-transform infrared spectroscopy showed an enthalpy of activation of 19 kJ mol-1 and a ∼2.5-fold kinetic isotope effect. Overall, these results support electron injection from CdSe into CaI involving F-clusters, and that the Hox→HredH+ step of catalytic proton reduction in CaI proceeds by a proton-dependent process.

(Invited) Resolving Sites for Catalysis in Amorphous Metal Oxide and Molecular Water-Oxidation Catalysts Using in-Situ X-Ray Techniques

A key challenge for the development of materials and technologies for solar-to-fuels energy conversion lies in resolving structure, structural dynamics, and mechanisms underlying solar fuels catalysis, and measuring these structural parameters during functional conditions. This presentation will discuss the resolution of sites for solar-driven catalysis in amorphous cobalt oxide and molecular water-oxidation catalysts using a combination of in-situ high energy X-ray (60 keV) scattering with atomic pair distribution function (PDF) analysis, cobalt L3 edge X-ray absorption spectroscopy, and anomalous wide angle X-ray scattering (AWAXS), with a goal of resolving structure, "one electron at a time", following successive, single-electron, photo-initiated electron transfers. We have extended the in-situ PDF technique by developing 3-D porous electrode architectures that enable structural characterization of interfacial thin films during photo-electrochemistry with 0.2 Å spatial resolution. PDF-electrochemistry measurements for the cobalt borate OEC film, CoBi, poised across the potentials from 0.5 V and 1.4 V vs NHE show lattice contraction of the domains as a result of bond shortening by the accumulation of metal centers in high valence oxidation states. The structural change is associated with increased metal-oxo covalency and charge delocalization. Comparable in-situ PDF measurements for the cobalt phosphate, CoPi, OEC show that charge accumulation leads to similar domain lattice contraction. In addition, for CoPi the CoIICoIII to CoIIICoIII transition is found to be coupled to Co-O peak broadening and amplitude decreases for pairs involving edge O atoms, identifying these as the sites for redox activity. Corresponding changes are seen in the P-O peak. These results provide experimental evidence for a Pi edge-associated model with bond length disorder. The PDF data shows that Pi remains edge-bound at the onset of water oxidation, suggesting the possible positioning of Pi for function in proton-coupled electron transfer. The cobalt OEC are also distinguished by X-ray absorption at the L3 edge, with CoPi showing both octahedral and tetrahedral Co(II) assigned to lattice and edge or extra-domain connecting sites, respectively. Finally, we demonstrate new AWAXS measurements for structure resolution in molecular and mixed metal OEC.

Biological iron-sulfur storage in a thioferrate-protein nanoparticle

Iron–sulfur clusters are ubiquitous in biology and function in electron transfer and catalysis. They are assembled from iron and cysteine sulfur on protein scaffolds. Iron is typically stored as iron oxyhydroxide, ferrihydrite, encapsulated in 12 nm shells of ferritin, which buffers cellular iron availability. Here we have characterized IssA, a protein that stores iron and sulfur as thioferrate, an inorganic anionic polymer previously unknown in biology. IssA forms nanoparticles reaching 300 nm in diameter and is the largest natural metalloprotein complex known. It is a member of a widely distributed protein family that includes nitrogenase maturation factors, NifB and NifX. IssA nanoparticles are visible by electron microscopy as electron-dense bodies in the cytoplasm. Purified nanoparticles appear to be generated from 20 nm units containing ∼6,400 Fe atoms and ∼170 IssA monomers. In support of roles in both iron–sulfur storage and cluster biosynthesis, IssA reconstitutes the [4Fe-4S] cluster in ferredoxin in vitro.

Remote Perturbations in Tertiary Contacts Trigger Ligation of Lysine to the Heme Iron in Cytochrome c.

Perturbations in protein structure define the mechanism of allosteric regulation and biological information transfer. In cytochrome c (cyt c), ligation of Met80 to the heme iron is critical for the protein's electron-transfer (ET) function in oxidative phosphorylation and for suppressing its peroxidase activity in apoptosis. The hard base Lys is a better match for the hard ferric iron than the soft base Met is, suggesting the key role of the protein scaffold in favoring Met ligation. To probe the role of the protein structure in the maintenance of Met ligation, mutations T49V and Y67R/M80A were designed to disrupt hydrogen bonding and packing of the heme coordination loop, respectively. Electronic absorption, nuclear magnetic resonance, and electron paramagnetic resonance spectra reveal that ferric forms of both variants are Lys-ligated at neutral pH. A minor change in the tertiary contacts in T49V, away from the heme coordination loop, appears to be sufficient to execute a change in ligation, suggesting a cross-talk between the different regions of the protein structure and a possibility of built-in conformational switches in cyt c. Analyses of thermodynamic stability, kinetics of Lys binding and dissociation, and the pH-dependent changes in ligation provide a detailed characterization of the Lys coordination in these variants and relate these properties to the extent of structural perturbations. The findings emphasize the importance of the hydrogen-bonding network in controlling ligation of the native Met80 to the heme iron.

In situ Observation of Direct Electron Transfer Reaction of Cytochrome c Immobilized on ITO Electrode Modified with 11-{2-[2-(2-Methoxyethoxy)- ethoxy]ethoxy}undecylphosphonic Acid Self-assembled Monolayer Film by Electrochemical Slab Optical Waveguide Spectroscopy

To immobilize cytochrome c (cyt.c) on an ITO electrode while keeping its direct electron transfer (DET) functionality, the ITO electrode surface was modified with 11-{2-[2-(2-methoxyethoxy)ethoxy]ethoxy}undecylphosphonic acid (CH3O (CH2CH2O)3C11H22PO(OH)2, M-EG3-UPA) self-assembled monolayer (SAM) film. After a 100-times washing process to exchange a phosphate buffer saline solution surrounding cyt.c and ITO electrode to a fresh one, an in situ observation of visible absorption spectral change with slab optical waveguide (SOWG) spectroscopy showed that 87.7% of the cyt.c adsorbed on the M-EG3-UPA modified ITO electrode remained on the ITO electrode. The SOWG absorption spectra corresponding to oxidized and reduced cyt.c were observed with setting the ITO electrode potential at 0.3 and -0.3 V vs. Ag/AgCl, respectively, while probing the DET reaction between cyt.c and ITO electrode occurred. The amount of cyt.c was evaluated to be about 19.4% of a monolayer coverage based on the coulomb amount in oxidation and reduction peaks on cyclic voltammetry (CV) data. The CV peak current maintained to be 83.4% compared with the initial value for a M-EG3-UPA modified ITO electrode after 60 min continuous scan with 0.1 V/s between 0.3 and -0.3 V vs. Ag/AgCl.

Ultrafast photochemistry of the bc1 complex.

We present a full investigation of ultrafast light-induced events in the membraneous cytochrome bc1 complex by transient absorption spectroscopy. This energy-transducing complex harbors four redox-active components per monomer: heme c1, two 6-coordinate b-hemes and a [2Fe-2S] cluster. Using excitation of these components in different ratios under various excitation conditions, probing in the full visible range and under three well-defined redox conditions, we demonstrate that for all ferrous hemes of the complex photodissociation of axial ligands takes place and that they rebind in 5-7 ps, as in other 6-coordinate heme proteins, including cytoglobin, which is included as a reference in this study. By contrast, the signals are not consistent with photooxidation of the b hemes. This conclusion contrasts with a recent assessment based on a more limited data set. The binding kinetics of internal and external ligands are indicative of a rigid heme environment, consistent with the electron transfer function. We also report, for the first time, photoactivity of the very weakly absorbing iron-sulfur center. This yields the unexpected perspective of studying photochemistry, initiated by excitation of iron-sulfur clusters, in a range of protein complexes.

Effect of circular permutation on the structure and function of type 1 blue copper center in azurin.

Type 1 copper (T1Cu) proteins are electron transfer (ET) proteins involved in many important biological processes. While the effects of changing primary and secondary coordination spheres in the T1Cu ET function have been extensively studied, few report has explored the effect of the overall protein structural perturbation on active site configuration or reduction potential of the protein, even though the protein scaffold has been proposed to play a critical role in enforcing the entatic or "rack-induced" state for ET functions. We herein report circular permutation of azurin by linking the N- and C-termini and creating new termini in the loops between 1st and 2nd β strands or between 3rd and 4th β strands. Characterization by electronic absorption, electron paramagnetic spectroscopies, as well as crystallography and cyclic voltammetry revealed that, while the overall structure and the primary coordination sphere of the circular permutated azurins remain the same as those of native azurin, their reduction potentials increased by 18 and 124 mV over that of WTAz. Such increases in reduction potentials can be attributed to subtle differences in the hydrogen-bonding network in secondary coordination sphere around the T1Cu center.

Globin X is a six-coordinate globin that reduces nitrite to nitric oxide in fish red blood cells

The discovery of novel globins in diverse organisms has stimulated intense interest in their evolved function, beyond oxygen binding. Globin X (GbX) is a protein found in fish, amphibians, and reptiles that diverged from a common ancestor of mammalian hemoglobins and myoglobins. Like mammalian neuroglobin, GbX was first designated as a neuronal globin in fish and exhibits six-coordinate heme geometry, suggesting a role in intracellular electron transfer reactions rather than oxygen binding. Here, we report that GbX to our knowledge is the first six-coordinate globin and the first globin protein apart from hemoglobin, found in vertebrate RBCs. GbX is present in fish erythrocytes and exhibits a nitrite reduction rate up to 200-fold faster than human hemoglobin and up to 50-fold higher than neuroglobin or cytoglobin. Deoxygenated GbX reduces nitrite to form nitric oxide (NO) and potently inhibits platelet activation in vitro, to a greater extent than hemoglobin. Fish RBCs also reduce nitrite to NO and inhibit platelet activation to a greater extent than human RBCs, whereas GbX knockdown inhibits this nitrite-dependent NO signaling. The description of a novel, six-coordinate globin in RBCs with dominant electron transfer and nitrite reduction functionality provides new insights into the evolved signaling properties of ancestral heme-globins.

Regulation of Gene Expression in Shewanella oneidensis MR-1 during Electron Acceptor Limitation and Bacterial Nanowire Formation.

In limiting oxygen as an electron acceptor, the dissimilatory metal-reducing bacterium Shewanella oneidensis MR-1 rapidly forms nanowires, extensions of its outer membrane containing the cytochromes MtrC and OmcA needed for extracellular electron transfer. RNA sequencing (RNA-Seq) analysis was employed to determine differential gene expression over time from triplicate chemostat cultures that were limited for oxygen. We identified 465 genes with decreased expression and 677 genes with increased expression. The coordinated increased expression of heme biosynthesis, cytochrome maturation, and transport pathways indicates that S. oneidensis MR-1 increases cytochrome production, including the transcription of genes encoding MtrA, MtrC, and OmcA, and transports these decaheme cytochromes across the cytoplasmic membrane during electron acceptor limitation and nanowire formation. In contrast, the expression of the mtrA and mtrC homologs mtrF and mtrD either remains unaffected or decreases under these conditions. The ompW gene, encoding a small outer membrane porin, has 40-fold higher expression during oxygen limitation, and it is proposed that OmpW plays a role in cation transport to maintain electrical neutrality during electron transfer. The genes encoding the anaerobic respiration regulator cyclic AMP receptor protein (CRP) and the extracytoplasmic function sigma factor RpoE are among the transcription factor genes with increased expression. RpoE might function by signaling the initial response to oxygen limitation. Our results show that RpoE activates transcription from promoters upstream of mtrC and omcA The transcriptome and mutant analyses of S. oneidensis MR-1 nanowire production are consistent with independent regulatory mechanisms for extending the outer membrane into tubular structures and for ensuring the electron transfer function of the nanowires. Shewanella oneidensis MR-1 has the capacity to transfer electrons to its external surface using extensions of the outer membrane called bacterial nanowires. These bacterial nanowires link the cell's respiratory chain to external surfaces, including oxidized metals important in bioremediation, and explain why S. oneidensis can be utilized as a component of microbial fuel cells, a form of renewable energy. In this work, we use differential gene expression analysis to focus on which genes function to produce the nanowires and promote extracellular electron transfer during oxygen limitation. Among the genes that are expressed at high levels are those encoding cytochrome proteins necessary for electron transfer. Shewanella coordinates the increased expression of regulators, metabolic pathways, and transport pathways to ensure that cytochromes efficiently transfer electrons along the nanowires.

Surface-enhanced infrared absorption spectroscopy and electrochemistry reveal the impact of nanoparticles on the function of protein immobilized on mimic biointerface

Study of the interactions between engineered nanoparticles and biomolecules plays an important role in understanding nano-bio effect. However, most of studies focus on the interaction of protein with nanoparticle in bulk phase, the impact of nanoparticle on the function of protein immobilized on the biological interface has been ignored for a long time. In this paper, we study the effect of SiO2 NPs on electron transfer function of cytochrome c (cyt c) adsorbed onto the 11-mercaptoundecanoic acid (MUA) self-assembled monolayer (SAM) by surface-enhanced infrared absorption spectroscopy (SEIRAS) combined with electrochemistry. Our results disclose that instead of inhibiting the electron transfer, exposure of SiO2 NPs enhances the redox reversibility, electron transfer rate, and catalytic performance of adsorbed cyt c, but induces a slight negative shift in the formal potential of the adsorbed cyt c. Interaction of SiO2 NPs slightly induces the structural changes of the β-sheet in the oxidized form and the change of microenvironment surrounding them, which could further change the microenvironment and the orientation of heme, facilitating the hydration of cyt c at the oxidized state. It could be the enhanced hydration of cyt c (Fe3+) and a smaller change in the total hydration from reduced to oxidized state that results in the slight negative shift in the formal potential and promotes the electron transfer capability. Besides, cyt c’s slight conformational change and the disturbance to the microenvironment of heme resulting from the adsorption of SiO2 NPs could also be one of the reason that leads to the enhanced catalytic capability towards the reduction of H2O2.

Integrated bio-electrogenic process for bioelectricity production and cathodic nutrient recovery from azo dye wastewater

Microbial electrochemical treatment (MET) process was designed to evaluate complete mineralization of partially treated dye effluent obtained from anoxically operated Periodic discontinuous batch reactor (PDBR) for simultaneous bioelectricity generation and recovery of nutrients. In MET bioreactor, anode and cathode chambers were fed with designed synthetic wastewater (DSW) and PDBR dye effluents. The dye metabolite (NH4+) will be converted to nitrates by the activity of aerobic biocatalyst present in cathode chamber to be used as biofertilizer. Dye removal of 90.2% was observed with good electrogenic activity (voltage (OCV)/current; 395 mV/1.77 mA). The mineralization of dye and its intermediates were assessed by reduction in overall toxicity from 23% to 4%. Chemical oxygen demand (COD) removal efficiency of 75% (anode) and 88% (cathode) were observed in correspondence to higher azoreductase (18.7 U; 48 h) and dehydrogenase (1.66 μg/ml of toluene; 24 h) enzyme activities which correlated well with metabolic activities of biocatalyst. Bioelectrocatalytic behavior of mixed biocatalyst on the basis of redox catalytic currents and prevalence of redox mediators signified the specific function of electron transfer toward dye mineralization. The results obtained suggest that the use of MET can considerably degrade toxic pollutants and provides nitrate rich solution (biofertilizer). Utilization of recovered nutrients directly to farms without any energy intensive methods is reported in this communication.

Structure and Function of a Bacterial Microcompartment Shell Protein Engineered to Bind a [4Fe-4S] Cluster.

Bacterial microcompartments (BMCs) are self-assembling organelles composed of a selectively permeable protein shell and encapsulated enzymes. They are considered promising templates for the engineering of designed bionanoreactors for biotechnology. In particular, encapsulation of oxidoreductive reactions requiring electron transfer between the lumen of the BMC and the cytosol relies on the ability to conduct electrons across the shell. We determined the crystal structure of a component protein of a synthetic BMC shell, which informed the rational design of a [4Fe-4S] cluster-binding site in its pore. We also solved the structure of the [4Fe-4S] cluster-bound, engineered protein to 1.8 Å resolution, providing the first structure of a BMC shell protein containing a metal center. The [4Fe-4S] cluster was characterized by optical and EPR spectroscopies; it has a reduction potential of -370 mV vs the standard hydrogen electrode (SHE) and is stable through redox cycling. This remarkable stability may be attributable to the hydrogen-bonding network provided by the main chain of the protein scaffold. The properties of the [4Fe-4S] cluster resemble those in low-potential bacterial ferredoxins, while its ligation to three cysteine residues is reminiscent of enzymes such as aconitase and radical S-adenosymethionine (SAM) enzymes. This engineered shell protein provides the foundation for conferring electron-transfer functionality to BMC shells.

First principles design of a core bioenergetic transmembrane electron-transfer protein

Here we describe the design, Escherichia coli expression and characterization of a simplified, adaptable and functionally transparent single chain 4-α-helix transmembrane protein frame that binds multiple heme and light activatable porphyrins. Such man-made cofactor-binding oxidoreductases, designed from first principles with minimal reference to natural protein sequences, are known as maquettes. This design is an adaptable frame aiming to uncover core engineering principles governing bioenergetic transmembrane electron-transfer function and recapitulate protein archetypes proposed to represent the origins of photosynthesis. This article is part of a Special Issue entitled Biodesign for Bioenergetics — the design and engineering of electronic transfer cofactors, proteins and protein networks, edited by Ronald L. Koder and J.L. Ross Anderson.

An unusual electrochemical oxidation of phenothiazine dye to phenothiazine-bi-1,4-quinone derivative (a donor-acceptor type molecular hybrid) on MWCNT surface and its cysteine electrocatalytic oxidation function

Phenothiazine (PTZ), a thiazine class heterocyclic compound, is a well-known electron donating system and has been widely used as a starting compound to prepare various phenothiazine dyes and pharmaceutically important compounds. Quinones and its derivatives are constituents of biologically active molecules serve as excellent electron-acceptor systems. Oxidation of PTZ by chemical and electrochemical methods often resulted into monohydroxylation of benzene ring moiety, S-oxidized and polymerized compounds as end products. Electrochemical oxidation of PTZ on a multiwalled carbon nanotube (MWCNT) modified glassy carbon electrode in pH 7 phosphate buffers solution (PBS) has been investigated in this work. A highly redox active surface confined PTZ-bi-1,4-quinone derivative (PTZ-biQ) on MWCNT modified glassy carbon electrode, designated as GCE/MWCNT@PTZ-biQ, as a product was unusually observed. The GCE/MWCNT@PTZ-biQ showed well-defined redox peaks at E1/2=−0.07 and +0.29V vs Ag/AgCl corresponding to surface confined electron-transfer behavior of the bi-quinone (acceptor) and PTZ-cationic radical species (donor) respectively. No such electrochemical characteristics were noticed when unmodified GCE was subjected to the electrochemical oxidation of PTZ. Existence of PTZ-biQ was confirmed by XRD, Raman spectroscopy, FT-IR and GC-MS (methanolic extract of the active layer) analyses. Position of biQ in PTZ-biQ as 1,4-quinone isomer was confirmed by observation of absence of copper-complexation with 1,4-quinone and H2O2 electrochemical reduction reactions at −0.1V vs Ag/AgCl unlike to the specific copper-complexation and H2O2 reduction with 1,2-quinone isomer in pH 7. Cysteine (CySH) oxidation was studied as a model system to understand the electron-transfer function of the MWCNT@PTZ-biQ. A highly selective electrocatalytic oxidation and sensing by amperometric i-t and flow injection analysis of CySH at low oxidation potential, 0.3V vs Ag/AgCl in pH 7 PBS with detection limit values (signal-to-noise ratio=3) of 11.10μM and 110nM respectively, without any interference from other biochemicals like uric acid, dopamine, nitrite, citric acid and H2O2, unlike the conventional chemically modified electrodes with serious interference's, have been demonstrated.

Noble-metal-free NiSnxOy decorated graphene cocatalyst for highly efficient reduction of water to hydrogen

Nickel tin composite oxides decorated graphene nanohybrid (NiSnxOy/G) cocatalyst was synthesized by in-situ chemical deposition and followed photoreduction reaction. The structure of NiSnxOy/G was characterized by transmission electron microscopy (TEM), X-ray diffraction (XRD) and X-ray photoelectron spectroscopy (XPS). The photocatalytic activity of NiSnxOy/G sensitized by Eosin Y (EY) for hydrogen evolution were evaluated under visible light irradiation (λ ＞ 420 nm) using triethanolamine (TEOA) as sacrificial donor. The results indicated that the large amounts of NiSnxOy adhered on the surface of graphene sheet as active sites for hydrogen production. NiSnxOy/G showed higher photocatalytic performance than Ni/G under visible light irradiation (λ ≥ 420 nm) due to the higher photocatalytic activities of NiSnxOy and the electron transfer function of graphene sheets. The highest apparent quantum efficiency (AQE) of 36.2% over EY-NiSnxOy/G was achieved at 430 nm.

Solution structure of the NDH-1 complex subunit CupS from Thermosynechococcus elongatus

The cyanobacterial multi-subunit membrane protein complex NDH-1 is both structurally and functionally related to Complex I of eubacteria and mitochondria. In addition to functions in respiration and cyclic electron transfer around photosystem I (PSI), the cyanobacterial NDH-1 complex is involved in a unique mechanism for inorganic carbon concentration. Although the crystal structures of the similar respiratory Complex I from Thermus thermophilus and Escherichia coli are known, atomic structural information is not available for the cyanobacterial NDH-1 complex yet. In particular, the structures of those subunits that are not homologous to Complex I will help to understand their distinct functions. The 15.7kDa protein CupS is a small soluble subunit of the complex variant NDH-1MS, which is thought to play a role in CO2 conversion.Here, we present the NMR structure of CupS from Thermosynechococcus elongatus, which is the very first structure of a specific cyanobacterial NDH-1 complex subunit. CupS shares a structural similarity with members of the Fasciclin protein superfamily. The structural comparison to Fasciclin type proteins based on known NMR structures and protein sequences of human TGFBIp, MPB70 from Mycobacterium bovis, and Fdp from Rhodobacter sphaeroides, together with a virtual docking model of CupS and NdhF3, provide first insight into the specific binding of CupS to the NDH-1MS complex at atomic resolution.

Electrochemically-Induced Radical Cation Diels-Alder Reactions Assisted By "Redox Tag Strategy"

Diels-Alder (DA) reaction is among the most important reaction for constructing carbon-carbon bond in organic chemistry. The mechanisms into it are well understood; diene and dienophile should have complementary electronic characters for smooth reaction. In the situation where both substrates are electron-rich, significantly higher temperature or longer time are required. One of the most effective solution for such electronically-mismatched DA is umpolung process, which can give highly electrophilic radical cation from otherwise nucleophilic electron-rich starting substrates by one electron oxidation. Namely, the radical cations generated from electron-rich olefins can readily afford the DA adduct with nucleophilic electron rich dienes.1 Since electrochemical method has proven to be the simplest approach for the umpolung reaction, anodic method has been developed for the radical cation-mediated DA (rDA).2 Our group have been focused on the anodically-induced C-C bond forming reactions using lithium perchlorate nitromethane electrolyte solution system.3 In particular, [2 + 2] cycloaddition reaction4 between enol ether and unactivated terminal olefin is initiated by one electron oxidation of enol ether to give corresponding radical cation. The reaction allow for the mechanistic study of radical cation species, providing information, for example, intramolecular electron transfer properties5 and functionality of aromatic radical cation intermediates.6 In the talk to be presented, anodically-induced rDA (Scheme 1) will be reported especially to electrochemical condition, scope and limitations, and new design of the rDA based on the previous study of radical cation properties.

Computational study of interaction of alkali metals with C3N nanotubes

Interaction of the alkali metals (AMs) like lithium (Li), sodium (Na), and potassium (K) with defective and non-defective (8,0) C3N nanotubes (C3NNT) have been investigated using the first-principles study. In addition to structural properties, we have also studied the electronic properties, charge transfer, and work function of the AM-C3NNT complexes. AMs are adsorbed on hollow sites, regardless of the initial positions. Upon the adsorption of AMs, the structures exhibit semiconducting behavior. Furthermore, interaction of Li atom can be explained by Dewar model, whereas for the other atoms there are different explanations. For all metal adsorbates, the direction of the charge transfer is from adsorbate to adsorbent, because of their high surface reactivity. The results showed that the nanotube with carbon vacancy is the most favorite adsorbent. Our findings also indicated that the enhancement in absolute adsorption energy is in order of Li > K > Na. It is noteworthy that clustering of AM atoms on the nanotubes with and without defects is not expected. It is worthy that C3NNT is a better adsorbent for AM atoms than CNT, graphene, C60, and B80.