Functioning Of Coastal Ecosystems Research Articles

Overcoming Shifting Baselines: Paleo-Behaviour Reveals Industrial Revolution as Tipping Point.

Human activities have significantly altered coastal ecosystems worldwide. The phenomenon of shifting baselines syndrome (SBS) complicates our understanding of these changes, masking the true scale of human impacts. This study investigates the long-term ecological effects of anthropogenic activities on New Zealand's coastal ecosystems over 800 years using fish otolith microchemical profiling and dynamic time warping across an entire stock unit. Results reveal a shift in snapper (Chrysophrys auratus; Sparidae) habitat-use behaviour, transitioning from low-salinity estuarine environments to higher-salinity habitats, correlating with ongoing land-use changes. This shift coincided with New Zealand's localised Industrial Revolution, which served as a tipping point for widespread ecosystem transformation. By comparing current coastal fish movement profiles with historical baselines, we provide evidence to address SBS and guide conservation strategies. Re-establishing pre-industrial habitat-use behaviours in snapper will indicate successful habitat restoration, promoting overall ecosystem connectivity and resilience. Our findings enable more effective habitat restoration measures and sustainable management practices, informing policies for maintaining coastal biodiversity and ecosystem function.

Influence of Rivers, Tides, and Tidal Wetlands on Estuarine Carbonate System Dynamics

Variations in estuarine carbonate chemistry can have critical impacts on marine calcifying organisms, yet the drivers of this variability are difficult to quantify from observations alone, due to the strong spatiotemporal variability of these systems. Terrestrial runoff and wetland processes vary year to year based on local precipitation, and estuarine processes are often strongly modulated by tides. In this study, a 3D-coupled hydrodynamic-biogeochemical model is used to quantify the controls on the carbonate system of a coastal plain estuary, specifically the York River estuary. Experiments were conducted both with and without tidal wetlands. Results show that on average, wetlands account for 20–30% of total alkalinity (TA) and dissolved inorganic carbon (DIC) fluxes into the estuary, and double-estuarine CO2 outgassing. Strong quasi-monthly variability is driven by the tides and causes fluctuations between net heterotrophy and net autotrophy. On longer time scales, model results show that in wetter years, lower light availability decreases primary production relative to biological respiration (i.e., greater net heterotrophy) resulting in substantial increases in CO2 outgassing. Additionally, in wetter years, advective exports of DIC and TA to the Chesapeake Bay increase by a factor of three to four, resulting in lower concentrations of DIC and TA within the estuary. Quantifying the impacts of these complex drivers is not only essential for a better understanding of coastal carbon and alkalinity cycling, but also leads to an improved assessment of the health and functioning of coastal ecosystems both in the present day and under future climate change.

Hydrographic shifts in coastal waters reflect climate-driven changes in hydrological regimes across Northwestern Patagonia

Climate-driven changes in freshwater inputs have been shown to affect the structure and function of coastal ecosystems. We evaluated changes in the influence of river runoff on coastal systems of Northwestern Patagonia (NWP) over recent decades (1993–2021) by combined analysis of long-term streamflow time series, hydrological simulation, satellite-derived and reanalysis data on sea surface conditions (temperature, turbidity, and salinity). Significant decreases in minimum streamflow across a zone spanning six major river basins were evident at weekly, monthly, and seasonal scales. These changes have been most pronounced in mixed-regime northern basins (e.g., Puelo River) but appear to be progressing southward to rivers characterised by a nival regime. In the adjacent two-layer inner sea, reduced freshwater input corresponds with a shallower halocline and increased surface temperatures across northern Patagonia. Our results underscore the rapidly evolving influence of rivers on adjacent estuarine and coastal waters in NWP. We highlight the need for cross-ecosystem observation, forecasting, mitigation and adaptation strategies in a changing climate, together with corresponding adaptive basin management of systems that supply runoff to the coastal marine waters.

Responses of coastal phytoplankton communities to seasonal herbicide inputs: Tolerance or degeneration?

Herbicide-induced phytoplankton inhibition threatens coastal biodiversity and ecosystem function. Although studies employing single-frequence exposure aid in understanding the phytoplankton community's responses to herbicides, it’s difficult to objectively assess their response to cyclic herbicide inputs (long-term low-dose and short-term high-dose) in marine ecosystems. Here, we analyzed the concentration and distribution of herbicides in global coastal waters and simulated this cyclic process through a two-phase atrazine exposure mesocosm experiment and laboratory tests. The results indicated that, the herbicide concentrations (0.82 nmol L−1, 95 % CI 0.55, 1.74) from May to August were significantly higher than that (0.14 nmol L−1, 95 % CI 0.02, 0.38) in the remainder months, and highest concentrations typically emerged in summer; the changes in phytoplankton community composition under environmental concentrations of triazine herbicides could recover in the short term, but sustained inhibition of biomass was produced; the dominant populations were more likely to develop tolerance through preexposure and recover from subsequent impulse of atrazine, but this process was accompanied by the loss of rare groups and a decrease in biodiversity, meanwhile, affected the bacterial community in phycosphere. Consequently, we considered that the cyclic herbicide inputs may cause more detrimental effects than single-frequence exposure, potentially leading to a large-scale decline in coastal primary productivity.

Assessing the ecological response plant and soil to the seawalls in the Laizhou bay coastal wetland, China

Coastal wetlands are extremely vulnerable to both marine damage and human activities. In order to protect these wetlands, many artificial seawalls have been constructed. However, studies are required to understand how coastal wetlands will evolve under the influence of artificial seawalls. Therefore, to understand this succession process of plants and their adaptation to habitats divided by seawalls, two different habitats inside and outside the seawalls were selected in Laizhou Bay, China. The results showed that there were 5 plant species outside the seawalls that were lower than the 13 species inside. Additionally, the dominant plant species were varied between the two habitats, with mostly annual herbs observed outside the seawalls and perennial shrubs inside. Soil salinity was higher outside the seawalls, which was the key impact factor of soil nutrient differences. The distribution of annual and perennial species may be constrained by spatial differences in soil stoichiometry. Therefore, the plants in coastal wetlands vary significantly at a small scale in response to the disturbance of artificial seawalls. The differences in soil and plants between the two habitats divided by the artificial seawalls provide a new insight for evaluating the artificial coastal projects. The only way to reduce the effects of seawalls on natural coastal wetland vegetation and ecosystem functions is to restore connectivity of tidal flow inside and outside the seawalls.

Contrasted trends of intertidal macroalgal communities and sharp decline of canopy-forming species across two decades

Macroalgal communities are essential to coastal ecosystems, yet increasing effects of global change and anthropogenic pressures are leading to their global decline. Investigating the long-term dynamics of these communities across different localities appears crucial to better understand their responses to such pressures, as our knowledge of spatial heterogeneities in macroalgal trajectories remains elusive. To fill this gap, the community trajectory analysis framework provides a set of innovative multivariate metrics to characterize and quantitatively compare the temporal dynamics of different communities. Using long-term monitoring data (2004-2022), this method was applied to intertidal macroalgal communities across 10 locations distributed over more than 500 km of coastline in Brittany, France. Three distinct temporal dynamics were identified. High-shore communities exhibited minimal changes over time, while low-shore communities were characterized by a fluctuating understorey species composition but a general stability pattern. In contrast, the mid-shore community dominated by Ascophyllum nodosum underwent conspicuous changes in composition and structure. Further analysis of the latter community unveiled clear spatial patterns, with a significant deterioration of the structural state attributed to canopy loss in eastern Brittany, negatively impacting understorey species. This decline may ultimately lead to massive changes in coastal ecosystem functioning and services. This study emphasizes the importance of maintaining long-term ecological monitoring as well as the pertinence of temporal trajectories methods to identify and understand community changes at various spatial scales.

Rapid effects of plastic pollution on coastal sediment metabolism in nature

While extensive research has explored the effects of plastic pollution, ecosystem responses remain poorly quantified, especially in field experiments. In this study, we investigated the impact of polyester pollution, a prevalent plastic type, on coastal sediment ecosystem function. Strips of polyester netting were buried into intertidal sediments, and effects on sediment oxygen consumption and polyester additive concentrations were monitored over 72-days. Our results revealed a rapid reduction in the magnitude and variability of sediment oxygen consumption, a crucial ecosystem process, potentially attributed to the loss of the additive di(2-ethylhexyl) phthalate (DEHP) from the polyester material. DEHP concentrations declined by 89% within the first seven days of deployment. However, effects on SOC dissipated after 22 days, indicating a short-term impact and a quick recovery by the ecosystem. Our study provides critical insights into the immediate consequences of plastic pollution on ecosystem metabolism in coastal sediments, contributing to a nuanced understanding of the temporal variation of plastic pollution’s multifaceted impacts. Additionally, our research sheds light on the urgent need for comprehensive mitigation strategies to preserve marine ecosystem functionality from plastic pollution impacts.

Multifaceted biological indicators reveal an effective conservation scheme for marine protected areas

Marine protected areas are set up across the globe to safeguard biodiversity and support coastal ecosystem functioning. In Hong Kong, partially protected marine parks and a no-take marine reserve have been managed under legislation for years, yet a comprehensive evaluation of their conservation impact is still pending despite the region’s reputation for high marine diversity. Most studies assess conservation effectiveness solely in terms of taxonomic diversity, without delving into the contributions of functional and phylogenetic diversity. In this study, we used environmental DNA combined with multifaceted diversity indicators to assess the impact of the level of protection on the fish community in Hong Kong waters. Our results indicated that the marine protected areas significantly contributed to fish community conservation. The no-take marine reserve exhibited the highest taxonomic and phylogenetic diversity, while partially protected marine parks showed the most balanced community composition. No significant increase in fish functional diversity was found in the protected areas. Water quality, hydrological condition, and protection level were the primary factors affecting community variation for taxonomic, functional, and phylogenetic diversity, respectively. Fish species composition significantly varied with different protection levels, and species turnover was the main component of the dissimilarity. Future management of marine protected areas should assess multifaceted biological indicators and establish a rational conservation scheme.

Assessing the combined effects of catchment land use and runoff on estuarine fish assemblages

Connectivity between land and sea through the movement of species, energy and nutrients means that land-based impacts can affect the structure and functioning of nearby coastal ecosystems. As the interface between land and sea, estuaries are often faced with increasing pressures from catchment modifications (e.g. the removal of terrestrial vegetation) which can alter the overall health of estuaries (e.g. the degradation of coastal water quality due to an increase in terrestrial runoff) and change the value of habitat for many marine species. These landscape-scale impacts can, however, be mediated through variations in the context and connectivity of seascapes (e.g. greater extent of vegetated ecosystems help to filter nutrients). We surveyed fish across five estuaries over four years using underwater videography and sought correlations between fish biodiversity and abundance with variables indexing catchment land use, seascape connectivity, and coastal water quality. Fish assemblages were more abundant and diverse at sites which had lower chlorophyll-a concentrations and were nearer to the estuary mouth, in conjunction with catchments containing higher percent of natural land and heterogenous seascapes. Sites with lower concentrations of chlorophyll-a supported indicator species from more diverse functional groups that had greater fisheries values, in comparison to indicator species from sites with high concentrations of chlorophyll-a. This research can help direct coastal management to better prioritise management in coastal ecosystems, thereby enhancing fish richness and abundance, functional group richness and fisheries value.

Biogeographical diet variation within and between the rabbitfishes Siganus corallinus, Siganus doliatus, Siganus trispilos and Siganus virgatus.

Feeding habits of herbivorous fishes play an important role in shaping the form and function of coastal marine ecosystems. Rabbitfishes (Siganidae) are important consumers of macroalgae on Indo-West Pacific coral reefs. However, it is unclear how their diet varies among and within species at biogeographical scales, casting doubt on their precise functional roles across different regions. The present study assessed the inter- and intra-specific diet variation of four rabbitfishes (Siganus trispilos, Siganus corallinus, Siganus virgatus and Siganus doliatus) factored by morphological relatedness among populations from Ningaloo Reef (western Australia), the Great Barrier Reef (GBR, eastern Australia) and the Yaeyama Islands (Okinawa Prefecture, Japan). Results showed that the region had a strong effect on diet, effectively reducing the expected effect of morphologic similitude. While intra-specific differences were only significant when populations inhabited different regions; interspecific differences were not as predicted, with different morphotypes having similar diets when populations inhabited the same regions. Rabbitfishes consumed more corticated and filamentous macroalgae on the GBR, more foliose and membranous macroalgae at the Yaeyama Islands, and more leathery macroalgae at Ningaloo Reef. The findings indicate that rabbitfishes have high diet plasticity, and hence their functional role as mediators of competition between macroalgae and corals can change across biogeographic regions. Local context is therefore important when assessing the diet and functional role of herbivorous fishes. As climate change unfolds, shifts in the distribution, trophic behaviour and function of species are expected, making the study of trophic plasticity more important.

What if the upwelling weakens? Effects of rising temperature and nutrient depletion on coastal assemblages

Surface temperature of the oceans has increased globally over the past decades. In coastal areas influenced by eastern boundary upwelling systems (EBUS), winds push seawater offshore and deep, cold and nutrient-rich seawater rise towards the surface, partially buffering global warming. On the North coast of Portugal, the NW Iberian upwelling system allows extensive kelp forests to thrive in these “boreal-like” conditions, fostering highly diverse and productive communities. However, the warming of the upper layer of the ocean may weaken this upwelling, leading to higher sea surface temperature and lower nutrient input in the coastal areas. The effects of these changes on the structure and function of coastal ecosystems remain unexplored. The present study aimed to examine the combined effects of elevated temperature and nutrient depletion on semi-naturally structured assemblages. The eco-physiological responses investigated included growth, chlorophyll fluorescence and metabolic rates at the levels of individual species and whole assemblages. Our findings showed interactive effects of the combination of elevated temperature with nutrient depletion on the large canopy-forming species (i.e., kelp). As main contributor to community response, those effects drove the whole assemblage responses to significant losses in productivity levels. We also found an additive effect of elevated temperature and reduced nutrients on sub-canopy species (i.e., Chondrus crispus), while turfs were only affected by temperature. Our results suggest that under weakening upwelling scenarios, the ability of the macroalgal assemblages to maintain high productivity rates could be seriously affected and predict a shift in community composition with the loss of marine forests.

Habitat Fragmentation Enhances the Difference between Natural and Artificial Reefs in an Urban Marine Coastal Tract

Coastal urbanization and the consequent proliferation of artificial structures greatly impact rocky reef communities, productive and diverse marine environments that play a crucial role in the functioning of broader coastal ecosystems. This study, conducted along a 7 km stretch of coastline at increasing distance from the port of Genoa (Ligurian Sea), investigated whether the alternating presence of artificial and natural reefs leads to discernible differences in the biota inhabiting these two reef types. The study area is one of the most anthropized areas of the Mediterranean Sea, exhibiting nearly 60% coastal artificialization, which severely impacts coastal ecosystems, favouring the replacement of sensitive species with more tolerant species. Ten reefs (5 natural and 5 artificial) were surveyed by scuba diving at about a 6-m depth, employing quadrats of 50 cm × 50 cm to estimate visually the percent cover of conspicuous sessile organisms. The artificial reefs hosted a similar number of species (18) to their natural counterparts (19) but exhibited a distinct community composition: the former were especially characterized by Jania rubens and filamentous algae, with the latter characterized by Peyssonnelia squamaria and Mesophyllum lichenoides. This difference, however, became negligible where coastal habitat fragmentation (here measured with a purposely devised Fragmentation Index) was minimal. Reducing fragmentation may therefore represent a management strategy to minimize the potential impact of artificial structures on marine biodiversity.

Long term declines in the functional diversity of sharks in the coastal oceans of eastern Australia

Human impacts lead to widespread changes in the abundance, diversity and traits of shark assemblages, altering the functioning of coastal ecosystems. The functional consequences of shark declines are often poorly understood due to the absence of empirical data describing long-term change. We use data from the Queensland Shark Control Program in eastern Australia, which has deployed mesh nets and baited hooks across 80 beaches using standardised methodologies since 1962. We illustrate consistent declines in shark functional richness quantified using both ecological (e.g., feeding, habitat and movement) and morphological (e.g., size, morphology) traits, and this corresponds with declining ecological functioning. We demonstrate a community shift from targeted apex sharks to a greater functional richness of non-target species. Declines in apex shark functional richness and corresponding changes in non-target species may lead to an anthropogenically induced trophic cascade. We suggest that repairing diminished shark populations is crucial for the stability of coastal ecosystems.

Marine predators segregate interspecifically by space and time in a sheltered coastal bay.

Marine predators are vital to the healthy functioning of coastal ecosystems, but to understand their roles, it is necessary to elucidate their movement ecology, particularly in relation to one another. A decade's worth of acoustic telemetry data (2011-2020) from Algoa Bay, South Africa, was investigated to determine how two mesopredatory species (teleosts: dusky kob Argyrosomus japonicus, n = 11, and leervis Lichia amia, n = 16) and two top predatory species (sharks: ragged-tooth sharks Carcharias taurus, n = 45, and white sharks Carcharodon carcharias, n = 31) used and shared this bay ecosystem. Multi-annual seasonal fidelity to the bay was exhibited by all species, but differences in residency were observed among species. Similarly, species used space in the bay differently-the teleosts moved less and had movements restricted to the central and western inshore regions of the bay. Conversely, the sharks roamed more, but detections were concentrated in the western part of the bay for C. taurus and in the eastern part of the bay for C. carcharias. Social network analysis showed that species segregated in space and time on a fine scale. However, there was some interaction observed between C. taurus, L. amia, and A. japonicus, but to varying degrees. This is likely because of strong habitat preferences exhibited by each species and predator-prey relationships between these predatory guilds. Results highlight that the sheltered marine Algoa Bay is a resource-rich environment, supporting multiple predators with different hunting strategies albeit similar prey preferences. Finally, these species are likely afforded some protection by the current Greater Addo Elephant National Park Marine Protected Area in the bay but are vulnerable to fishing pressure when they leave this ecosystem.

Land use change and coastal water darkening drive synchronous dynamics in phytoplankton and fish phenology on centennial timescales

AbstractAt high latitudes, the suitable window for timing reproductive events is particularly narrow, promoting tight synchrony between trophic levels. Climate change may disrupt this synchrony due to diverging responses to temperature between, for example, the early life stages of higher trophic levels and their food resources. Evidence for this is equivocal, and the role of compensatory mechanisms is poorly understood. Here, we show how a combination of ocean warming and coastal water darkening drive long‐term changes in phytoplankton spring bloom timing in Lofoten Norway, and how spawning time of Northeast Arctic cod responds in synchrony. Spring bloom timing was derived from hydrographical observations dating back to 1936, while cod spawning time was estimated from weekly fisheries catch and roe landing data since 1877. Our results suggest that land use change and freshwater run‐off causing coastal water darkening has gradually delayed the spring bloom up to the late 1980s after which ocean warming has caused it to advance. The cod appear to track phytoplankton dynamics by timing gonadal development and spawning to maximize overlap between offspring hatch date and predicted resource availability. This finding emphasises the importance of land–ocean coupling for coastal ecosystem functioning, and the potential for fish to adapt through phenotypic plasticity.

Bivalve tissues as a recorder of multidecadal global anthropogenic and climate‐mediated change in coastal areas

AbstractRecent rapid changes in climate and environmental conditions have significantly impacted coastal ecosystem functioning. However, the complex interplay between global and local effects makes it challenging to pinpoint the primary drivers. In a multi‐ecosystem study, we analyzed pluri‐decadal trends of bivalve‐δ13C as recorder of global environmental changes. These trends were correlated with large‐scale natural and anthropogenic climate proxies to identify whether coastal biota responded to global effects. Our findings revealed decreasing bivalve‐δ13C trends in all sea regions, mainly linked with increased temperature and atmospheric‐CO2 concentrations, the later generating a decrease in atmospheric‐CO2 δ13C values (Suess effect) because of fossil‐fuel burning. After removing the Suess effect from bivalve‐δ13C trends, ongoing global climate variability continues to affect most ecosystems, possibly intensified by combined, interacting regional or local effects. These results highlight the need to consider large‐scale effects to fully understand ecosystem and food web responses to the multiple effects of global change.

Decadal changes of macrofauna community in a semi-enclosed Bay of Yueqing in East China Sea

To reveal the long-term variation of macrofauna community in Yueqing Bay, an aquacultural bay famous for its shellfish culturing in the East China Sea, macrofauna samples were collected in three period from 2002 to 2003 and 2006–2007 to 2020–2021. The results show that macrofaunal community structure in this area has changed significantly (ANOSIM, p < 0.01) in nearly two decades with significant decreases in species number, biodiversity index and average biomass. Meanwhile, the taxa composition also changed significantly as the dominance of annelid increased while that of mollusks, echinoderms and vertebrates decreased. As a consequence of the variation of taxa composition and total biomass, macrofauna community showed a tendency of miniaturization as individuals with smaller body size and lower biomass dominated the community. According to the results of CCA analysis, temperature, salinity and dissolved oxygen content were the main environmental factors that restricted the species composition of macrofauna community. Further studies still needed to reveal the main reasons that cause the variation of macrofauna community. Overall, the results of this study suggest that the present status of Yueqing Bay benthic ecosystem is concerning from a macrobenthos perspective, as the biodiversity index and biomass of macrofauna decreased significantly. Effective measures should be taken in urgently to restrain the safety and function of coastal ecosystems.

Revealing the Spatial-Temporal Evolution and Obstacles of Ecological Security in the Xiamen-Zhangzhou-Quanzhou Region, China

Climate change and human activities have caused various ecological risks to coastal urban agglomerations. Ecological security refers to the state of health of an ecosystem and its integrity. An objective and comprehensive evaluation of ecological security is significant for protecting the structure and function of coastal ecosystems. The driving force–pressure–state–impact–response (DPSIR) model was used to construct a dynamic simulation model of ecological security in the Xiamen–Zhangzhou–Quanzhou region (XZQR), located on the eastern coast of China. The ecological security level (ESL) characteristics of the spatial and temporal patterns were evaluated by calculating the ecological security index (ESI). Obstacle factors were analyzed as well. The results show the following: (1) From 2011 to 2021, the average ESI rose from 0.238 to 0.686 and went through a relatively insecure stage (2011–2015), a critical stage (2016–2019), and a relatively secure stage (2020–2021). (2) The ESI level in Quanzhou was higher in the early stage, and the level of ecological security in Zhangzhou showed a significant rising trend, increasing by 0.541. Its increase depended on increases in the impact layer. (3) The impact layer is the main obstacle layer affecting the ESL, and the main obstacles include CO2 emissions (0.117), annual rainfall (0.091), general public budget expenditures (0.082), GDP growth rates (0.082), and green coverage in built-up areas (0.075). Therefore, we recommend promoting the complementary advantages of the XZQR and implementing ecological restoration projects.

Developing a Redox Network for Coastal Saltmarsh Systems in the PFLOTRAN Reaction Model

AbstractCoastal ecosystems have been largely ignored in Earth system models but are important zones for carbon and nutrient processing. Interactions between water, microbes, soil, sediments, and vegetation are important for mechanistic representation of coastal processes and ecosystem function. To investigate the role of these feedbacks, we used a reactive transport model (PFLOTRAN) that has the capability to be connected to the Energy Exascale Earth System Model (E3SM). PFLOTRAN was used to incorporate redox reactions and track chemical species important for coastal ecosystems as well as define simple representations of vegetation dynamics. Our goal was to incorporate oxygen flux, salinity, pH, sulfur cycling, and methane production along with plant‐mediated transport of gases and tidal flux. Using porewater profile and incubation data for model calibration and evaluation, we were able to create depth‐resolved biogeochemical soil profiles for saltmarsh habitat and use this updated representation to simulate direct and indirect effects of elevated CO2 and temperature on subsurface biogeochemical cycling. We found that simply changing the partial pressure of CO2 or increasing temperature in the model did not fully reproduce observed changes in the porewater profile, but the inclusion of plant or microbial responses to CO2 and temperature manipulations was more accurate in representing porewater concentrations. This indicates the importance of characterizing tightly coupled vegetation‐subsurface processes for developing predictive understanding and the need for measurement of plant‐soil interactions on the same time scale to understand how hotspots or moments are generated.

Linking Resource Quality and Biodiversity to Benthic Ecosystem Functions Across a Land-to-Sea Gradient

Benthic macrofauna modifies carbon and nutrient retention and recycling processes in coastal habitats. However, the contribution of benthic consumers to carbon and nutrient storage and recycling shows variation over spatial scales, as the benthic community composition changes in response to differences in environmental conditions. By sampling both shallow sandy and deep muddy sediments across a land-to-sea gradient in the northern Baltic Sea, we explored if benthic community composition, stoichiometry and process rates change in response to alterations in environmental conditions and food sources. Our results show that benthic faunal biomass, C, N, and P stocks, respiration rate and secondary production increase across the land-to-sea gradient in response to higher resource quality towards the open sea. The seston δ13C indicated terrestrial runoff and δ15N sewage input at the innermost study sites, whereas more fresh marine organic matter towards the open sea boosted benthic faunal carbon storage, respiration rate, and secondary production, that is, the generation of consumer biomass, which are essential processes for carbon turnover in this coastal ecosystem. Also, biological factors such as increasing species richness and decreasing biomass dominance of the clam Macoma balthica were significant in predicting benthic faunal C, N, and P stocks and process rates, especially at sandy sites. Interestingly, despite the variation in food sources, the benthic faunal C:N:P ratios remained stable across the gradient. Our results prove that human activities in the coastal area can influence the important links between biodiversity, structure, and process rates of benthic communities by modifying the balance of available resources, therefore hampering the functioning of coastal ecosystems.