Function Of Substrate Concentration Research Articles

Redox cycling and kinetic analysis of single molecules of solution-phase nitrite reductase

Single-molecule measurements are a valuable tool for revealing details of enzyme mechanisms by enabling observation of unsynchronized behavior. However, this approach often requires immobilizing the enzyme on a substrate, a process which may alter enzyme behavior. We apply a microfluidic trapping device to allow, for the first time, prolonged solution-phase measurement of single enzymes in solution. Individual redox events are observed for single molecules of a blue nitrite reductase and are used to extract the microscopic kinetic parameters of the proposed catalytic cycle. Changes in parameters as a function of substrate concentration are consistent with a random sequential substrate binding mechanism.

Analysis of Heterotropic Cooperativity in Cytochrome P450 3A4 Using α-Naphthoflavone and Testosterone

Cytochrome P450 3A4 (CYP3A4) displays non-Michaelis-Menten kinetics for many of the substrates it metabolizes, including testosterone (TST) and α-naphthoflavone (ANF). Heterotropic effects between these two substrates can further complicate the metabolic profile of the enzyme. In this work, monomeric CYP3A4 solubilized in Nanodiscs has been studied for its ability to interact with varying molar ratios of ANF and TST. Comparison of the observed heme spin state, NADPH consumption, and product formation rates with a non-cooperative model calculated from a linear combination of the global analysis of each substrate reveals a detailed landscape of the heterotropic interactions and indicates negligible binding cooperativity between ANF and TST. The observed effect of ANF on the kinetics of TST metabolism is due to the additive action of the second substrate with no specific allosteric effects.

Unraveling the flavin-catalyzed photooxidation of benzylic alcohol with transient absorption spectroscopy from sub-pico- to microseconds

Flavin-mediated photooxidations have been described for applications in synthetic organic chemistry for some time and are claimed to be a route to the use of solar energy. We present a detailed investigation of the involved photophysical and photochemical steps in methoxybenzyl alcohol oxidation on a timescale ranging from sub-picoseconds to tens of microseconds. The results establish the flavin triplet state as the key intermediate for the photooxidation. The initial step is an electron transfer from the alcohol to the triplet state of the flavin catalyst with (3)k(ET)≈ 2 × 10(7) M(-1) s(-1), followed by a proton transfer in ∼6 μs. In contrast, the electron transfer involving the singlet state of flavin is a loss channel. It is followed by rapid charge recombination (τ = 50 ps) without significant product formation as seen when flavin is dissolved in pure benzylic alcohol. In dilute acetonitrile/water solutions of flavin and alcohol the electron transfer is mostly controlled by diffusion, though at high substrate concentrations >100 mM we also find a considerable contribution from preassociated flavin-alcohol-aggregates. The model including a productive triplet channel and a competing singlet loss channel is confirmed by the course of the photooxidation quantum yield as a function of substrate concentration: We find a maximum quantum yield of 3% at 25 mM of benzylic alcohol and significantly smaller values for both higher and lower alcohol concentrations. The observations indicate the importance to perform flavin photooxidations at optimized substrate concentrations to achieve high quantum efficiencies and provide directions for the design of flavin photocatalysts with improved performance.

Structure of Oxalacetate Acetylhydrolase, a Virulence Factor of the Chestnut Blight Fungus

Oxalacetate acetylhydrolase (OAH), a member of the phosphoenolpyruvate mutase/isocitrate lyase superfamily, catalyzes the hydrolysis of oxalacetate to oxalic acid and acetate. This study shows that knock-out of the oah gene in Cryphonectria parasitica, the chestnut blight fungus, reduces the ability of the fungus to form cankers on chestnut trees, suggesting that OAH plays a key role in virulence. OAH was produced in Escherichia coli and purified, and its catalytic rates were determined. Oxalacetate is the main OAH substrate, but the enzyme also acts as a lyase of (2R,3S)-dimethyl malate with approximately 1000-fold lower efficacy. The crystal structure of OAH was determined alone, in complex with a mechanism-based inhibitor, 3,3-difluorooxalacetate (DFOA), and in complex with the reaction product, oxalate, to a resolution limit of 1.30, 1.55, and 1.65 A, respectively. OAH assembles into a dimer of dimers with each subunit exhibiting an (alpha/beta)(8) barrel fold and each pair swapping the 8th alpha-helix. An active site "gating loop" exhibits conformational disorder in the ligand-free structure. To obtain the structures of the OAH.ligand complexes, the ligand-free OAH crystals were soaked briefly with DFOA or oxalacetate. DFOA binding leads to ordering of the gating loop in a conformation that sequesters the ligand from the solvent. DFOA binds in a gem-diol form analogous to the oxalacetate intermediate/transition state. Oxalate binds in a planar conformation, but the gating loop is largely disordered. Comparison between the OAH structure and that of the closely related enzyme, 2,3-dimethylmalate lyase, suggests potential determinants of substrate preference.

Quantification of α-galactosidase activity in intact leukocytes

Mutations of the α-galactosidase (α-Gal) A gene in Fabry disease lead to a severe disturbance in glycosphingolipid catabolism. The atypical clinical picture of Fabry disease hampers diagnosis, resulting in a delayed start of therapy. Current tests utilize leukocyte lysates to evaluate the activity of α-Gal A. It has never been investigated whether cell homogenisation is necessary. Isolated leukocyte subsets were incubated with the α-Gal substrate methylumbelliferyl-α-D galactopyranosid (MU-Gal) and substrate conversion was measured by fluorimetry. Specificity of the reaction was evaluated using the α-Gal inhibitor deoxygalactonojirimycin (DGJ). The novel procedure was compared to the standard method. A reference population and Fabry patients were tested. Substrate conversion in intact leukocytes was a function of substrate concentration, cell number and time and could be inhibited by DGJ. Monocytes showed the highest enzyme activity among leukocyte populations. The novel procedure highly correlated with the standard method. Both Fabry hemizygotes and heterozygotes showed reduced substrate conversion. We here present a novel sensitive, fast and simple procedure for the evaluation of α-Gal activity suitable to identify enzyme deficiencies in Fabry patients. Furthermore, we show for the first time that leukocyte subtypes have different α-Gal activities.

Mechanism and regulation of folate uptake by pancreatic acinar cells: effect of chronic alcohol consumption

Folate plays an essential role in one-carbon metabolism, and a relationship exists between methyl group metabolism and pancreatic exocrine function. Little, however, is known about the mechanism(s) and regulation of folate uptake by pancreatic acinar cells and the effect of chronic alcohol use on the process. We addressed these issues using the rat-derived pancreatic acinar cell line AR42J and freshly isolated primary rat pancreatic acinar cells as models. We found [(3)H]folic acid uptake to be 1) temperature and pH dependent with a higher uptake at acidic than at neutral/alkaline pH; 2) saturable as a function of substrate concentration at both buffer pH 7.4 and 6.0; 3) inhibited by folate structural analogs and by anion transport inhibitors at both buffer pH 7.4 and 6.0; 4) trans-stimulated by unlabeled folate; 5) adaptively regulated by the prevailing extracellular folate level, and 6) inhibited by modulators of the cAMP/PKA-mediated pathway. Both the reduced folate carrier (RFC) and the proton-coupled folate transporter (PCFT) were found to be expressed in AR42J and in primary pancreatic acinar cells, as well as in native human pancreas with expression of RFC being higher than PCFT. Chronic alcohol feeding of rats (4 wk; 36% of calories from ethanol) led to a significant decrease in folate uptake by freshly isolated primary pancreatic acinar cells compared with cells from pair-fed controls; this effect was associated with a parallel decrease in the level of expression of RFC and PCFT. These studies reveal that folate uptake by pancreatic acinar cells is via a regulated carrier-mediated process which may involve RFC and PCFT. In addition, chronic alcohol feeding leads to a marked inhibition in folate uptake by pancreatic acinar cells, an effect that is associated with reduction in level of expression of RFC and PCFT.

Modulation of the Human Glucuronosyltransferase UGT1A Pathway by Splice Isoform Polypeptides Is Mediated through Protein-Protein Interactions

This study investigated the molecular mechanisms underlying the regulatory effect of the newly discovered 45-kDa enzymatically inactive UGT1A spliced polypeptides, named isoform i2, upon UGT1A-mediated glucuronidation. Initially, using an inducible system that mimics the relative abundance of isoforms 1 and 2 of UGT1A1 in human tissues, the rates of formation of glucuronides were significantly reduced. We then used a heterologous system constitutively expressing both isoforms i1 and i2 for an in-depth investigation of the presence of spliced i2 on glucuronidation kinetics. UGT1A1, UGT1A7, and UGT1A8 were selected as candidates for these studies. In all cases, co-expression of i1 and i2 in HEK293 cells leads to a significant reduction of the velocity of the glucuronidation reaction without affecting the affinity (K(m) (app)) for all substrates tested and the K(m) for the co-substrate, UDP-glucuronic acid. The data are consistent with a dominant-negative model of inhibition but do not sustain with an UGT1A_i2-mediated inhibition by competitive binding for substrate or the co-substrate. In contrast, the data from the co-immunoprecipitation experiments are indicative of the existence of a mixture homo-oligomeric (i1-i1 or i2-i2) and hetero-oligomeric (i1-i2) complexes in which the i2-i2 and i1-i2 subunits would be inactive. Thus, protein-protein interactions are likely responsible for the inhibition of active UGT1A_i1 by i2 spliced polypeptides. This new regulatory mechanism may alternatively modulate cellular response to endo/xeno stimulus.

Kinetics of Catalytic Reactions on Nanoclusters

Kinetics of heterogeneous catalytic reactions on nanoclusters is considered. The size of organic molecules used in various catalytic transformations is often ca. 0.5-1 nm, whereas nanoparticles in the range 2-4 nm are used in supported heterogeneous catalysts. Proposed quantitative treatment of a heterogeneous catalytic mechanism with two kinetically significant steps assumes that a finite number of molecules per a single metal cluster can be adsorbed. A general equation with polynomial terms in the numerator and the denominator is derived for nonideal (nonuniform) surfaces when all kinetic and adsorption constants depend on the spatial arrangements of reacting molecules. A simplified case of a two-step catalytic cycle is discussed, with the first step being adsorption on nanoclusters and the second one being further transformation of absorbed species. The corresponding kinetic equations are derived and numerically analyzed for the case of ideal (uniform) surfaces as well as the presence of induced nonuniformity, when contrary to the ideal case there are lateral interactions between adsorbed species. The form of kinetic equations allows not only saturation, typical for Eley-Rideal kinetics, but also positive cooperativity, i.e., S-shaped behavior of the reaction rate as a function of substrate concentration. Comparison with experimental data on hydrodechlorination of dichlorobenzenes is given.

Heterologous expression of an esterase from Thermus thermophilus HB27 in Saccharomyces cerevisiae

In this work, a system for high-level secretion by Saccharomyces cerevisiae of the Thermus thermophilus HB27 putative esterase YP_004875.1 was constructed. The recombinant protein was purified and partially characterised. Its lipolytic activity dropped abruptly when the acyl chain length of the substrate increased from 12 to 18 carbon atoms, and variation of the reaction rate as function of substrate concentration followed Michaelis–Menten kinetics. These results suggested that the enzyme was an esterase. The recombinant enzyme was N-glycosylated and both the glycosylated and non-glycosylated forms showed activity. Compared to the native enzyme, thermal stability (half-life of 4.3 h at 85 °C) was higher, optimum temperature (40 °C) was lower and optimum pH (7.5–8.5) was similar. These characteristics support potential biotechnological applications of the recombinant esterase.

The Gcn5 Bromodomain of the SAGA Complex Facilitates Cooperative and Cross-tail Acetylation of Nucleosomes

Bromodomains are acetyl lysine binding modules found in many complexes that regulate gene transcription. In budding yeast, the coactivator complex SAGA (Spt-Ada-Gcn5-acetyl-transferase) predominantly facilitates transcription of stress-activated genes and requires the bromodomain of the Gcn5 subunit for full activation of a number of these genes. This bromodomain has previously been shown to promote retention of the complex to H3 and H4 acetylated nucleosomes. Because the SAGA complex mediates histone H3 acetylation, we sought to determine to what extent the Gcn5 bromodomain directly modulates histone acetylation activity. Kinetic analysis of SAGA-mediated acetylation of nucleosomal substrates reveals that this bromodomain: 1) is required for the cooperative acetylation of nucleosomes, 2) enhances acetylation of an H3 histone tail when the other H3 tail within a nucleosome is already acetylated, and 3) augments the acetylation turnover of nucleosomes previously acetylated at lysine 16 of the histone H4 tails. These results indicate that the Gcn5 bromodomain promotes the establishment of nucleosome acetylation through multiple mechanisms and more generally show how chromatin recognition domains can modulate the enzymatic activity of chromatin modifying complexes.

Kinetic Activity of the Intact 26S Proteasome in Mice Liver: Selective Regulation of Estrogen on the Core ß2 Subunit

The 26S proteasome complex plays an essential role in intracellular protein degradation. The 26S complex contains one 20S proteolytic core and two 19S regulatory particles. We investigated the kinetic properties of the 26S proteasome and the potential regulation by estrogen in mice liver in control conditions (ovariectomized placebo treated) and after 10 days of estrogen treatment. Livers were homogenized with a low concentration of detergent to preserve proteasome integrity (mM): 50 Tris-HCl, 250 sucrose, 5 MgCl2, 2 ATP, 1 DTT, 0.5 EDTA, and 0.025% digitonin, pH 7.5. The assay buffer contained (mM): 50 Tris-HCl, 40 KCl, 5 MgCl2, 0.5 ATP, 1 DTT, pH 7.5. Activity was measured at 37 oC using three fluorescent substrates, s1, caspase-like (Z-LLE-AMC), s2, trypsin-like (Boc-LSTR-AMC), and s5, chymotrypsin-like (Suc-LLVY-AMC). With all substrates, the proteolytic kinetics showed three phases: 1) a delay reflecting an initial rate-limiting process (binding of the peptide substrates to the 19S regulatory particles and the translocation to the proteolytic core), 2) a linear time-dependent proteolysis (degradation process in the 20S chamber), and 3) a saturation phase. Activity was measured as a function of substrate concentration (10-500μM) at constant total protein (s1, s2 100 μg; β5, 50 μg). Increasing the substrate concentration did not affect the delay phase, while it increased the degradation rate and the saturation level. Increasing the protein concentration with constant substrate s1, s2 and s5 50 μM) seemed to reduce the delay phase, while the linear activity and the saturation levels peaked at 100 μg protein. Estrogen treatment selectively stimulated proteolytic activity of the s2 subunit trypsin-like activity. We conclude that proteasome activity has at least three sequential states with selective modulation by hormones of the proteolytic activity.

Nonlinear Modelling of Kinetic Data Obtained from Photocatalytic Mineralisation of 2,4‐Dichlorophenol on a Titanium Dioxide Membrane

Photomineralisation of 2,4‐dichlorophenol (DCP) in aqueous solutions (10.0–100.0 mg/L of C) was systematically studied at 318 ± 3 K, in an annular laboratory‐scale reactor, by photocatalytic membranes immobilizing titanium dioxide, as a function of substrate concentration, and absorbed power per unit length of membrane. Kinetics of both substrate disappearance, to yield intermediates, and total organic carbon (TOC) disappearance, to yield carbon dioxide, were followed (first series of experiments). At a fixed value of irradiance (1.50 W⋅cm−1), other series of mineralization experiments were repeated (second series of experiments) by carrying out only analyses of chemical oxygen demand (COD), in order to compare modelling results of the two sets of experiments. In both sets of experiments, stoichiometric hydrogen peroxide was used as oxygen donor. For the first series of experiments, a kinetic model was employed, already validated in previous work, from which, by a set of differential equations, four final optimised parameters, k1 and K1, k2 and K2, were calculated. By these parameters, the whole kinetic profile could be fitted adequately. The influence of irradiance on k1 and k2 could be rationalised very well by this four‐parameter kinetic model. Modelling of quantum yields, as a function of irradiance, could also be carried out satisfactorily. As has been found previously for other kinds of substrates, modelling of quantum yields for DCP mineralization is consistent with kinetics of hydroxyl radicals reacting between themselves, leading to hydrogen peroxide, other than with substrate or intermediates leading finally to carbon dioxide, paralleled by a second competition kinetics involving superoxide radical anion. For the second series of experiments, on the contrary, the Langmuir‐Hinshelwood model was employed. Uncertainties of COD analyses, coupled with discrepancies of this model and with its inability to reproduce kinetics up to complete mineralization, are underlined.

Biocatalysis in Water-in-Ionic Liquid Microemulsions: A Case Study with Horseradish Peroxidase

In this article we report the first results on the enzymatic activity of horseradish peroxidase (HRP) microencapsulated in water-in-ionic liquid (w/IL) microemulsions using pyrogallol as the substrate. Toward this goal, the system used in this study was composed of anionic surfactant AOT (sodium bis(2-ethyl-1-hexyl)sulfosuccinate)/hydrophobic IL [C(8)mim][Tf(2)N] (1-octyl-3-methyl imidazolium bis(trifluoromethylsulfonyl)amide)/water/1-hexanol. In this system, the catalytic activity of HRP was measured as a function of substrate concentrations, W(0) (molar ratio of water to surfactant), pH, and 1-hexanol content. The curve of the activity-W(0) profile was found to be hyperbolic for the new microemulsion. The apparent Michaelis-Menten kinetic parameters (k(cat) and K(m)) were estimated and compared to those obtained from a conventional microemulsion. Apparently, it was found that HRP-catalyzed oxidation of pyrogallol by hydrogen peroxide in IL microemulsuions is much more effective than in a conventional AOT/water/isooctane microemulsion. The stability of HRP solubilized in the newly developed w/IL microemulsions was examined, and it was found that HRP retained almost 70% of its initial activity after incubation at 28 degrees C for 30 h.

Kinetics and Mechanism of Ruthenacycle-Catalyzed Asymmetric Hydrogen Transfer

The mechanism of asymmetric hydrogen transfer catalyzed by a ruthenacycle has been studied. Ruthenium-hydride intermediates have been characterized by 1H NMR and IR. These hydride complexes appeared as a diastereomeric mixture (de = 64%) responsible for the enantiomeric excess of the hydrogen transfer reaction (ee = 60%). Kinetic measurements have been performed as a function of substrate concentration and temperature. Michaelis−Menten kinetics were observed indicating substrate−catalyst complex formation (thermodynamic data for the complexation reaction: ΔG0 = −13 kJ mol−1 at 273 K, ΔH0 = −58 kJ mol−1, ΔS0 = −170 J K−1 mol−1). The complexation process is accomplished prior to an intracomplex chemical reaction. As the substrate is still bound to the catalyst, pericyclic hydrogen transfer is deduced with an activation energy Ea = 83 kJ mol−1. On the basis of these data, a mechanism is proposed for the overall hydrogen transfer reaction.

A Kinetic Model for Suspended and Attached Growth of a Defined Mixed Culture

Kinetic experiments were carried out in a semicontinuous wastewater treatment process called self-cycling fermentation (SCF) using a defined mixed culture and various concentrations of synthetic brewery wastewater. The same consortium, which had been previously identified as Acinetobacter sp., Enterobacter sp., and Candida sp., were used in these experiments. The overall rate of substrate removal was attributable to both suspended microbes and the biofilm that formed during the treatment process. A rate expression was developed for the SCF system for a range of synthetic wastewaters containing glucose and various initial concentrations of ethanol and maltose. The data indicated that substrate removal by the suspended cells was directly related to the biomass concentration. However, substrate removal by the biofilm was apparently not affected by the biofilm thickness and was a function of substrate concentration only.

Inorganic and organic nitrogen uptake by the toxigenic diatom Pseudo-nitzschia australis (Bacillariophyceae)

The nitrogen uptake capabilities of the toxigenic diatom Pseudo-nitzschia australis (Frenguelli), freshly isolated from Monterey Bay California, were examined in unialgal laboratory cultures at saturating photosynthetic photon flux densities (100 μmol photons m −2 s −1) and 15 °C. The kinetics of nitrogen (nitrate, ammonium, urea and glutamine) uptake as a function of substrate concentration were estimated from short (20.5 min) incubations using the 15N-tracer technique. Based on the estimated maximum specific uptake rates and measures of N affinity (the initial slope of the uptake versus nutrient concentration curve), nitrate is the preferred nitrogen substrate, followed by glutamine and ammonium, which are equivalent. Rates of urea uptake by P. australis did not saturate at concentrations as high as 36 μg-at N L −1, and urea uptake as a function of concentration could not be described by Michaelis–Menten kinetics over the concentration gradient tested. Although there is a clear preference for nitrate at equivalent concentrations (compared to ammonium, urea, and glutamine), these laboratory results demonstrate the capability of this pennate diatom to utilize both inorganic and organic forms of nitrogen, supporting field observations that P. australis blooms during both upwelling and non-upwelling conditions off the west coast of North America. Substantial differences in the nitrogenous nutrition of P. australis can be expected in these environments, and anthropogenic inputs of N substrates such as ammonium and urea can support its growth, and may contribute significantly to both harmful diatom blooms and the maintenance of seed populations at non-bloom abundances, particularly during periods of reduced or absent upwelling.

Reagentless pH-stat for Microliter Fluid Specimens

pH-stating is a common technique for monitoring kinetics of various biochemical reactions that involve the generation of hydrogen or hydroxyl ions. In this work, we describe a reagentless electrochemical micro-pH-stat where the titrant of acid or base is produced by water electrolysis on the rotating sample system (RSS) platform. RSS originated from the authors' laboratory as a convective platform to support different analytical techniques in microliter-sized samples. As water electrolysis induces no volume change and the current that generates the reagent can be precisely measured even at low levels, very small samples in the microliter range become accessible for pH-stating: a reduction of more than an order of magnitude in specimen size relative to the most sensitive conventional methods. Nearly 100% current efficiency has been achieved with this system using a 250 microm Pt minidisc working electrode for electrolysis. The developed micro-pH-stat has been validated by the determination of the activity of erythrocyte acetylcholinesterase as a function of substrate concentration and pH. The optimal pH and activity profile obtained are in good agreement with those determined with standard techniques. The micro-pH-stat has the potential for applications for enzyme assays, reagentless pH control, acidity/alkalinity, and buffer capacity measurements in very small samples of biomedical and environmental origin.

Advantages in using non-isothermal bioreactors in bioremediation of water polluted by phenol by means of immobilized laccase from Rhus vernicifera

Laccase from Rhus vernicifera was immobilized on a polypropylene membrane chemically modified with chromic acid. Ethylenediamine and glutaraldehyde were used as spacer and bifunctional coupling agent, respectively. Phenol was used as substrate. To know how the immobilization procedures affected the enzyme reaction rate the catalytic behavior of soluble and insoluble laccase was studied under isothermal conditions as a function of pH, temperature and substrate concentration. From these studies, two main singularities emerged: (i) the narrower pH–activity profile of the soluble enzyme in comparison to that of the insoluble counterpart and (ii) the increase in pH and thermal stability of the insoluble enzyme. The laccase catalytic behavior was also studied in a non-isothermal bioreactor as a function of substrate concentration and size of the applied transmembrane temperature difference. It was found that, under non-isothermal conditions and keeping constant the average temperature of the bioreactor, the enzyme reaction rate linearly increased with the increase of the temperature difference.

Influence of Irradiance, Flow Rate, Reactor Geometry, and Photopromoter Concentration in Mineralization Kinetics of Methane in Air and in Aqueous Solutions by Photocatalytic Membranes Immobilizing Titanium Dioxide

Photomineralization of methane in air (10.0–1000 ppm (mass/volume) of C) at100%relative humidity (dioxygen as oxygen donor) was systematically studied at318±3 K in an annular laboratory-scale reactor by photocatalytic membranes immobilizing titanium dioxide as a function of substrate concentration, absorbed power per unit length of membrane, reactor geometry, and concentration of a proprietary vanadium alkoxide as photopromoter. Kinetics of both substrate disappearance, to yield intermediates, and total organic carbon (TOC) disappearance, to yield carbon dioxide, were followed. At a fixed value of irradiance (0.30 W⋅cm-1), the mineralization experiments in gaseous phase were repeated as a function of flow rate (4–400 m3⋅h−1). Moreover, at a standard flow rate of 300 m3⋅h−1, the ratio between the overall reaction volume and the length of the membrane was varied, substantially by varying the volume of reservoir, from and to which circulation of gaseous stream took place. Photomineralization of methane in aqueous solutions was also studied, in the same annular reactor and in the same conditions, but in a concentration range of 0.8–2.0 ppm of C, and by using stoichiometric hydrogen peroxide as an oxygen donor. A kinetic model was employed, from which, by a set of differential equations, four final optimised parameters,k1andK1,k2andK2, were calculated, which is able to fit the whole kinetic profile adequately. The influence of irradiance onk1andk2, as well as of flow rate onK1andK2, is rationalized. The influence of reactor geometry onkvalues is discussed in view of standardization procedures of photocatalytic experiments. Modeling of quantum yields, as a function of substrate concentration and irradiance, as well as of concentration of photopromoter, was carried out very satisfactorily. Kinetics of hydroxyl radicals reacting between themselves, leading to hydrogen peroxide, other than with substrate or intermediates leading to mineralization, were considered, and it is paralleled by a second competition kinetics involving superoxide radical anion.

A Bacterial Arginine-Agmatine Exchange Transporter Involved in Extreme Acid Resistance

The arginine-dependent extreme acid resistance response of Escherichia coli operates by decarboxylating arginine. AdiC, a membrane antiporter, catalyzes arginine influx coupled to efflux of the decarboxylation product agmatine, effectively exporting a proton in each turnover. Using the adiC coding sequence under control of a tetracycline promoter in an E. coli vector, we expressed and purified the transport-protein with a yield of approximately 10 mg/liter bacterial culture. Glutaraldehyde cross-linking experiments indicate that the protein is a homodimer in detergent micelles and lipid membranes. Purified AdiC reconstituted into liposomes exchanges arginine and agmatine in a strictly coupled, electrogenic fashion. Kinetic analysis yields K(m) approximately 80 microm for Arg, in the same range as its dissociation constant determined by isothermal titration calorimetry.