Full-sib Mating Research Articles

Inbred lines of mice derived from long-term growth selected lines: unique resources for mapping growth genes.

Lines of mice selected for many generations for high or low growth in several laboratories around the world have been collected, and from these, inbred lines are being developed by recurrent full-sib mating in Edinburgh. There are seven high selected lines and four low lines (each low line is from the same base population as one of the high lines), and the histories of each are summarized. Mean body weight of males at 70 days of age in the Edinburgh laboratory in the heaviest inbred line (77 g) is 4.8-fold higher than in the lightest line (16 g), and 1.9-fold higher than in the least extreme high line (41 g). Litter size, food intake, and fat content also differ substantially. These inbred extreme selected lines are a uniquely valuable resource for QTL or gene mapping, candidate gene identification, and elucidation of epistatic effects.

Comparison among Inbreeding Systems in Maize

The use of less severe inbreeding systems than self-fertilization has been suggested as a means of developing more vigorous maize lines (Zea mays L.). To compare different inbreeding systems, nine traits were evaluated in inbred lines developed by full-sib mating (F=0.5), self-fertilization (F=0.5), half-sib mating (F= 0.305), from the following populations: BR 105, a synthetic variety, and ESALQ-PB 4 , which is a composite of wide genetic base. The means and genetic parameters comparisons showed no important advantages of full-sib crosses over selfing. The inbreeding depression values for grain yield were similar between these groups of lines and inferior for half-sib lines. The inbreeding depression rates / 1% of expected homozigosity were similar among the three inbreeding systems. We conclude, in view of large inbreeding depression showed by tropical populations of maize in Brazil, that it is more reasonable to allocate resources and time in breeding source populations than to use milder forms of inbreeding.

Temporal changes in allele frequency, genetic variation and inbreeding depression in small populations of the guppy, Poecilia reticulata.

We established three closed lines of N = 10 for the guppy Poecilia reticulata, to evaluate the relationships among temporal changes in allele frequency, genetic variation and inbreeding depression for a fitness-related trait in small populations. Genetic variation at the allozyme loci, expressed by the proportion of polymorphic loci, number of alleles per locus and heterozygosity, decreased somewhat in two closed lines but it increased in one closed line over six generations. Effective population size (Ne) at each generation was estimated from the standardized variance in the allele frequencies. The average Ne was 24.4, 10.3 and 10.0 in the three closed lines. The inbreeding coefficient calculated from the Ne increased to 0.186, 0.321 and 0.414, respectively. As an index of the amount of inbreeding depression, changes in salinity tolerance were examined, because this trait is strongly sensitive to inbreeding depression and decreases linearly with an increase in inbreeding coefficient. The mean value of the salinity tolerance significantly decreased to 82.5%, 71.7% and 67.6% in the three closed lines during the six generations, suggesting inbreeding depression for salinity tolerance. Although a significant correlation was not observed between the amount of inbreeding depression and the genetic variation, the amount of inbreeding depression correlated with the inbreeding coefficient calculated from Ne. The regression line indicated an 8.4% decrease in the mean per 10% increase in the inbreeding coefficient and was similar to that obtained directly from full-sib matings. These results indicate that the temporal changes in the allele frequencies can provide an estimation of the amount of inbreeding depression during successive generations in small populations.

Full-Sib Mating Can Reduce Deleterious Effects Associated With Residual Sperm Inheritance In Gynogenotes

Fertilization of Oreochromis aureus eggs with UV-irradiated sperm from the closely related species O. niloticus, followed by diploidy restoration, produced offspring with lower embryo viability and higher skeletal deformation rates than siblings generated with sperm from a genetically distant species (Tilapia zillii). Results showed that: (a) deleterious effects due to O. niloticus sperm accu- mulate in gynogenetic fish over generations; (b) such effects are eliminated when using T. zillii sperm to fertilize eggs from gynogenetic mothers produced by full-sib matings. These results sug- gest that: (a) deleterious effects are associated with residual male DNA fragments which may be passed on to descendent offspring; (b) such fragments are significantly purged following full-sib mating. These findings suggest that biparental reproduction may play an important role in the con- trol of genome integrality by purging supernumerary chromosome fragments.

Inbreeding and extinction: Effects of purging

Deleterious alleles may be removed (purged) bynatural selection in populations undergoinginbreeding. However, there is controversyregarding the effectiveness of purging inreducing the extinction risk due to inbreeding,particularly in conservation contexts. Weevaluated the effects of purging on theextinction risk due to inbreeding in Drosophila melanogaster using two basepopulations, an outbred population (non-purged)and four-way crosses between highly inbredlines derived from the same population(purged). The inbred lines used in the four-waycrosses were previously subjected to 20generations of full-sib mating. The impact offull-sib inbreeding over a further 12generations was compared in 200 populationsfrom each of the two base populations. Therewas a small and non-significant differencebetween the extinction rates at an inbreedingcoefficient of 0.93 in the non-purged (0.74± 0.03) and purged (0.69 ± 0.03)treatments. This is consistent with otherevidence indicating that the effects of purgingare often small. Purging using rapid inbreedingin very small populations cannot be relied uponto eliminate the deleterious effects ofinbreeding.

Two inbred strains of mice with high and low mammary tumor potentials established from the same basal stock of Swiss albino (SHN and SLN): history of mammary tumorigenesis and reproduction after the 30th generation of full-sib mating.

We established SHN and SLN strains of mice with a high and a low mammary tumor potentials from the same basal stock of Swiss albino. The selection history of females (mothers) for subsequent generations, mammary tumorigenesis and reproduction up to recent generations are presented and compared with the results up to F30 published in 1979. The changes with generation of each parameter varied in both strains except the conditions of female (mother) selection for subsequent generations, which were generally constant. However, the fluctuations in parameters up to F30 became generally smaller with advancing generations. Based on the fluctuations from generation to generation of mammary tumorigenic and reproductive parameters, an interdependency between mammary tumor potential and reproductivity is suggested in SLN, but less so in SHN. The pup growth rate was increased and associated with selection for mammary tumorigenesis in SHN; this parameter is usually used as an indicator of mother lactational performance in mice. The significance of selection for mammary tumor potential in association with reproductivity was further discussed.

The effective population size of some age-structured populations

It was shown in a previous paper that if generations are discrete, then the effective population size of a large population can be derived from the theory of multitype branching processes. It turns out to be proportional to the reciprocal of a term that appears in the denominator of expressions for survival probabilities when there is a supercritical positively regular branching process for which the dominant positive eigenvalue of the first moment matrix is slightly larger than 1. If there is an age-structured population with unchanging proportions among sexes and age groups, then the effective population size is shown to be also obtainable from the theory of multitype branching processes. The expression for this parameter has the same form as in the corresponding model for discrete generations, multiplied by an appropriate measure of the average length of a generation. Results are obtained for dioecious random mating populations, populations reproducing partly by selfing, and populations reproducing partly by full-sib mating.

Effects of population structures and selection strategies on the purging of inbreeding depression due to deleterious mutations.

Stochastic simulations were run to compare the effects of nine breeding schemes, using full-sib mating, on the rate of purging of inbreeding depression due to mutations with equal deleterious effect on viability at unlinked loci in an outbred population. A number of full-sib mating lines were initiated from a large outbred population and maintained for 20 generations (if not extinct). Selection against deleterious mutations was allowed to occur within lines only, between lines or equal within and between lines, and surviving lines were either not crossed or crossed following every one or three generations of full-sib mating. The effectiveness of purging was indicated by the decreased number of lethal equivalents and the increased fitness of the purged population formed from crossing surviving lines after 20 generations under a given breeding scheme. The results show that the effectiveness of purging, the survival of the inbred lines and the inbreeding level attained are generally highest with between-line selection and lowest with within-line selection. Compared with no crossing, line crossing could lower the risk of extinction and the inbreeding coefficient of the purged population substantially with little loss of the effectiveness of purging. Compromising between the effectiveness of purging, and the risk of extinction and inbreeding coefficient, the breeding scheme with equal within- and between-line selection and crossing alternatively with full-sib mating is generally the most desirable scheme for purging deleterious mutations. Unless most deleterious mutations have relatively large effects on fitness in species with reproductive ability high enough to cope with the depressed fitness and thus increased risk of extinction with inbreeding, it is not justified to apply a breeding programme aimed at purging inbreeding depression by inbreeding and selection to a population of conservation concern.

048 Effects of Inbreeding in a “Wisconsin Fast Plants” Brassica rapa Population

Wisconsin Fast Plants (WFP) are small, rapid-cycling Brassica rapa populations that were developed by Paul Williams in the Dept. of Plant Pathology at the Univ. of Wisconsin, to facilitate classroom demonstration of biological principals. WFP exist as heterogenous populations, which have been selected for expression of different mutant phenotypes. Because of self-incompatibility mechanisms, it has been difficult to develop inbred lines of WFP via self-feritilization. Our objective was to inbreed a WFP population through full-sib mating. Genetic diversity was calculated for eight individuals from each of eight different WFF population, using 69 polymorphic RAPD (molecular marker) bands. The eight different WPF populatons were randomly mated (via chain crossing) for two generations. Six cycles of full-sib mating were initiated on 130 random families. After six cycles of full-sib mating, 79 families remain. The loss of families, during the process of inbreeding, may have been due to selection or drift. However, the expectation is that genetic variance will increase. The 79 inbred families express an array of different WFP phenotypes, e.g., anthocyanin pigmentation, yellow cotyledon, plant height, and seed color at different combinations in different inbred lines.

Mate choice in the face of both inbreeding and outbreeding depression in the intertidal copepod Tigriopus californicus

In species vulnerable to both inbreeding and outbreeding depression, individuals might be expected to choose mates at intermediate levels of genetic relatedness. Previous work on the intertidal copepod Tigriopus californicus has repeatedly shown that crosses between populations result in either no effect or hybrid vigor in the first generation, and hybrid breakdown in the second generation. Previous work also shows that mating between full siblings results in inbreeding depression. The present study again found inbreeding depression, with full sibling mating causing significant fitness declines in two of the three populations assayed. In the mate choice assays, a single female was combined with two males. Despite the costs of both inbreeding and outbreeding, mate choice showed clear inbreeding avoidance but no clear pattern of outbreeding avoidance. This lack of outbreeding avoidance may be attributed either to the temporary increase in fitness in the F1 generation or to the absence of selection for premating isolation in wholly allopatric populations with infrequent migration. If this inability to avoid unwise matings is common to other taxa, it may contribute to the problem of outbreeding depression when allopatric populations are mixed together.

Male-male competition magnifies inbreeding depression in wild house mice

The detrimental effects of inbreeding on vertebrates are well documented for early stages of the life cycle in the laboratory. However, the consequences of inbreeding on long-term survival and reproductive success (Darwinian fitness) are uncertain for vertebrates in the wild. Here, we report direct experimental evidence for vertebrates that competition increases the harmful effects of inbreeding on offspring survival and reproduction. We compared the fitness of inbred (from full-sib matings) and outbred wild house mice (Mus domesticus) in large, seminatural enclosures. Inbred males sired only one-fifth as many surviving offspring as outbred males because of their poor competitive ability and survivorship. In laboratory conditions, inbreeding had relatively minor effects on male reproductive success and no effect on survivorship. Seminatural conditions did not increase inbreeding depression for females, probably because females were not competing for any critical resources. The overall reduction in fitness from inbreeding was 57%, which is 4.5 times as great as previous estimates from the laboratory. These results have important implications for medicine, conservation, evolutionary biology, and functional genomics.

Male-male competition magnifies inbreeding depression in wild house mice.

The detrimental effects of inbreeding on vertebrates are well documented for early stages of the life cycle in the laboratory. However, the consequences of inbreeding on long-term survival and reproductive success (Darwinian fitness) are uncertain for vertebrates in the wild. Here, we report direct experimental evidence for vertebrates that competition increases the harmful effects of inbreeding on offspring survival and reproduction. We compared the fitness of inbred (from full-sib matings) and outbred wild house mice (Mus domesticus) in large, seminatural enclosures. Inbred males sired only one-fifth as many surviving offspring as outbred males because of their poor competitive ability and survivorship. In laboratory conditions, inbreeding had relatively minor effects on male reproductive success and no effect on survivorship. Seminatural conditions did not increase inbreeding depression for females, probably because females were not competing for any critical resources. The overall reduction in fitness from inbreeding was 57%, which is 4.5 times as great as previous estimates from the laboratory. These results have important implications for medicine, conservation, evolutionary biology, and functional genomics.

Temporal uniformity of the spontaneous mutational variance of quantitative traits in Drosophila melanogaster.

Spontaneous mutations were allowed to accumulate over 209 generations in more than 100 lines, all of them independently derived from a completely homozygous population of Drosophila melanogaster and subsequently maintained under strong inbreeding (equivalent to full-sib mating). Traits scored were: abdominal (AB) and sternopleural (ST) bristle number, wing length (WL) and egg-to-adult viability (V). On two occasions--early (generations 93-122) and late (generations 169-209)--ANOVA estimates of the mutational variance and the mutational line x generation interaction variance were obtained. Mutational heritabilities of morphological traits ranged from 2 x 10(-4) to 2 x 10(-3) and the mutational coefficient of variation of viability was 0.01. For AB, WL and V, temporal uniformity of the mutational variance was observed. However, a fluctuation of the mutational heritability of ST was detected and could be ascribed to random genotype x environment interaction.

Developing a new model for non-insulin dependent diabetes mellitus (NIDDM) by using the Philippine wild mouse, Mus musculus castaneus.

The Philippine wild-caught castaneus mouse (Mus musculus castaneus) and laboratory mouse (C57BL/6J: B6) were used to develop a new non-insulin dependent diabetes mellitus (NIDDM) model. Offspring from the cross between a wild male and B6 female were backcrossed to the sire. One male which exhibited highest fasting hyperglycemia (190 mg/dl) among eighty-seven backcross offspring was selected at 10 weeks of age, and crossed with a B6 female to comprise the fundamental stock (F0). Thereafter, full-sib mating was performed to develop a new inbred strain named CBD (Castaneus-B6 diabetic) mouse. Mice with relatively higher fasting hyperglycemia among F0 and F1 generations were selected for breeding. From the F2 generation, mice were defined as diabetic when blood glucose levels exceeded 200 mg/dl at 120 min in intraperitoneal glucose tolerance test (IPGTT) at 10 weeks of age, and have been selectively bred. The incidence of diabetic males from the F3-F6 generation fluctuated 45-75% at 10 weeks of age and 59-72% at 20 weeks of age. Diabetic males had about two-fold higher fasting glucose and insulin levels than B6 males. Glucose-stimulated insulin secretion was impaired in diabetic CBD mice compared to B6 males at 20 weeks. Moreover, diabetic mice had slight obesity compared to B6 mice. These facts indicated that diabetic features of CBD mice resemble NIDDM in humans. The CBD strain, characterized by high incidence and early onset of diabetes with mild obesity would be of value as a new NIDDM model. The method, utilizing wild castaneus mouse of different origin from laboratory mice, maybe useful in the development of other animal models.

Genetic changes in layer breeding: Historical trends and future prospects

SummaryIn commercial egg type chicken breeding three and four way crosses are used to produce commercial layers. The primary breeders are using closed nucleus breeding programmes, with birds kept under maximum biosecurity. All grand parents and parents are produced from a closed nucleus for the world wide demand of commercial layers. The breeding goals have been focused for several decades on increasing number of eggs per hen housed. Additional traits have become more important during the last decade, i.e. feed efficiency, internal and external egg quality and general adaptability. Prior to each selection, weights for individual traits within the selection index are adjusted to meet market demands. Breeding stock and commercial layers have to be bred to perform adequately in a variety of systems ranging from large intensive cage units to free range management under different environmental conditions world-wide.Despite intensive selection for egg production the decrease in genetic variation observed in closed commercial lines is not yet critical. Peak production is approaching the biological limit of one egg a day. During this period genetic and phenotypic variation have been significantly reduced. But for early production (sexual maturity) and late production (persistency) genetic variation is still high. In a mating scheme avoiding full and half sib matings no serious inbreeding depression is observed. To achieve continued future genetic progress, selection pressure will shift to other traits like internal and external egg quality and perhaps behaviour traits which still respond to selection.Primary breeders are responding to this challenge by testing pedigreed cross-line hens in a wide range of environments and housing systems while the pure-line elite stock is kept under conditions of maximum biosecurity. Marker assisted selection is already part of commercial breeding programmes. In the past, blood typing has been used to improve Marek's resistance, whereas today anonymous microsatellites which are linked to traits of economic interest are used for selection. In particular, selection between full sib males can give a major improvement.The whole industry is getting more specialised. While the genetic potential of the birds is improved management and nutrition have also to be adapted to changing demands. The general goal for the future is to breed chickens with the ability to function well within a wider range of production conditions and do not respond to the slightest stress.

Linkage Analysis and Mapping of Three Sex-Linked Color Pattern Genes in the Guppy, Poecilia reticulata

Abstract Three phenotypic color pattern genes of the guppy (Poecilia reticulata), i.e., black caudalpeduncle (Bcp), red tail (Rdt) and variegated tail patterning (Var), were genetically analyzed and mapped. Crosses between the Tuxedo (TUX) and Green Variegated (GV) guppy strains commercially cultured in Singapore were used to determine the gene control of these color patterns. F1 progenies were produced by single-pair reciprocal crossing between TUX and GV, while the F2 generation was obtained from full-sib mating between F1 males and females. F1 and F2 data were segregated according to color phenotypes and sex, and tested by chi-square analyses. The Bcp, Rdt and Var color pattern genes, located at different loci on the X- and Y-chromosomes, showed single gene inheritance and dominant expression in both sexes. Their corresponding recessive alleles, Bcp+, Rdt+ and Var+, do not produce any color patterns. Genotypes of Tuxedo males are proposed to be XBcp,Rdt,Var+YBcp,Rdt,Var+ (type I), XBcp+,Rdt,Var+YBcp,Rd...

Effect of selection against deleterious mutations on the decline in heterozygosity at neutral loci in closely inbreeding populations.

Transition matrices for selfing and full-sib mating were derived to investigate the effect of selection against deleterious mutations on the process of inbreeding at a linked neutral locus. Selection was allowed to act within lines only (selection type I) or equally within and between lines (type II). For selfing lines under selection type I, inbreeding is always retarded, the retardation being determined by the recombination fraction between the neutral and selected loci and the inbreeding depression from the selected locus, irrespective of the selection coefficient (s) and dominance coefficient (h) of the mutant allele. For selfing under selection type II or full-sib mating under both selection types, inbreeding is delayed by weak selection (small s and sh), due to the associative overdominance created at the neutral locus, and accelerated by strong selection, due to the elevated differential contributions between alternative alleles at the neutral locus within individuals and between lines (for selection type II). For multiple fitness loci under selection, stochastic simulations were run for populations with selfing, full-sib mating, and random mating, using empirical estimates of mutation parameters and inbreeding load in Drosophila. The simulations results are in general compatible with empirical observations.

Sex-Linkage of the Black Caudal-Peduncle and Red Tail Genes in the Tuxedo Strain of the Guppy, Poecilia reticulata

Abstract Two color patterns of the Tuxedo guppy strain commercially cultured in Singapore were subjected to genetic analyses. Gene control of the black caudal-peduncle and red tail color patterns was elucidated by reciprocal crosses between the Tuxedo (TUX) strain and wild-type (WT) stock. F1 progenies were produced by single-pair crossing between TUX and WT, while the F2 generation was obtained from full-sib mating between F1 males and females. F1 and F2 data were segregated according to phenotypes and sex, and tested by chi-square analyses. Both color patterns show single gene inheritance, and are dominantly expressed in both sexes, sex-linked and determined by different loci on the X- and Y-chromosomes. Alleles for the black caudal-peduncle (Bcp) and red tail (Rdt) loci, are dominant over that of the wild-type, Bcp+ and Rdt+, which do not display these color patterns. The typical genotypes for TUX guppies are proposed to be XBcp,RdtYBcp,Rdt for males and XBcp,RdtXBcp,Rdt for females. Heterozygous TUX m...

A COMPARISON OF INBREEDING DEPRESSION IN LIFE-HISTORY AND MORPHOLOGICAL TRAITS IN ANIMALS.

The current study tests the hypothesis that life-history traits (closely related to fitness) show greater inbreeding depression than morphological traits (less closely related to fitness). The mean and median slope of the standardized coefficient of inbreeding depression (the slope of the linear relationship between F and the trait value) for life-history and morphological traits were compared. Slopes for life-history traits were higher than those for morphological traits. At F = 0.25 (full-sibling mating), life-history traits experienced a median reduction of 11.8% in trait value, whereas morphological traits showed a depression in trait value of approximately 2.2%.

Genetic Basis of the Variegated Tail Pattern in the Guppy, Poecilia reticulata

Abstract Variegated patterns on the caudal fin are a common and popular trait in guppy strains commercially cultured in Singapore. Gene control of this highly variable mosaic pattern of black spots and patches of different shapes and sizes on a brightly colored tail fin was elucidated by reciprocal crosses between the Green Variegated (GV) strain and wild-type (WT) stock. F1 progenies were produced by single-pair crossing between GV and WT, while the F2 generation was obtained from full-sib mating between F1 males and F1 females. Data for the F1 and F2 generations were segregated according to phenotypes and sex, and tested by chi-square analyses. Inheritance of variegated tail patterns appears to be determined by a single locus on the X- and Y-chromosomes. Genotypes of males and females of the GV strain are proposed to be X VarYVar and XVarXVar, respectively. The allele for variegated tail patterning, Var, is dominant over that of the wild-type, Var+, which does not exhibit these patterns. Recombination f...