Frequency Of Sexual Reproduction Research Articles

High genotypic diversity of the reef-building coral <i>Porites lobata</i> (Scleractinia: Poritidae) in Isla del Coco National Park, Costa Rica

The isolated Isla del Coco experiences periodic, extreme disturbances which devastate coral reefs surrounding the island. Scleractinian corals build the physical structure of the reef therefore ecosystem recovery relies on coral species recovery. Coral recruits can be of sexual or asexual origin, and the relative success of the two recruit types influences the speed and spread of recovery processes. Here we focus on the massive coral, Porites lobata, because it is the main reef-builder around Isla del Coco to describe the relative contribution of asexual and sexual recruits to population maintenance. P. lobata samples were collected using a spatially explicit random sampling design in three plots at Isla del Coco: Punta Ulloa (n=17), Bahía Weston (n=20) and Punta María (n=20) and samples were genotyped with 11 microsatellite markers. Additional sampling was conducted at three “coastal” sites near the Costa Rican mainland (Isla del Caño Biological Reserve): Caño1 (n=8), Caño2 (n=10), Caño5 (n=11) to compare the contributions of asexual and sexual recruits at Isla del Coco sites to coastal sites. Isla del Coco sites were characterized by small colony size (>60% of colonies <0.5m2) and high sexual reproduction. Sites were either mostly or entirely sexual,consisting of only unique genotypes (NG/N= 0.90-1.00; G O/GE=0.83-1.00; D=0.99-1.00). Although there were no significant differences in genetic diversity (number of alleles per locus, number of private alleles) or colony size between Isla del Coco and the coastal sites, the coastal sites exhibited a greater range of genotypic diversity from moderately asexual (NG/N=0.5; GO/GE=0.36; D=0.8) to purely sexual (NG/N=1.0; GO/GE=1.0; D=1.0). The mode of asexual reproduction in P. lobata is likely fragmentation of adult colonies rather than asexual larval production because ramets of P. lobata occurred close together and asexually produced larvae have not been reported in gonochoric broadcast spawners like P. lobata. Frequent sexual reproduction at Isla del Coco National Park might represent a resource for rapid recovery following extreme El Niño-Southern Oscillation (ENSO) disturbance events. In contrast, larger, asexuallyproduced fragments rather than smaller, sexually-produced larvae appear to have the advantage at some coastal sites. The high frequency of sexual reproduction at Isla del Coco indicates that not only are sexual partners available but also current conditions are favorable for the delivery of larvae and the rate of predation on small larval recruits must be moderate. Citation: Boulay, J.N., J. Cortés, J. Nivia-Ruiz & I.B. Baums. 2012. High genotypic diversity of the reef-building coral Porites lobata (Scleractinia: Poritidae) in Isla del Coco National Park, Costa Rica. Rev. Biol. Trop. 60 (Suppl. 3): 279-292. Epub 2012 Dec 01.

Equal Distribution of Mating Type Alleles and the Presence of Strobilurin Resistance in Algerian Zymoseptoria tritici Field Populations.

Zymoseptoria tritici, the causal agent of septoria tritici blotch, is an important wheat pathogen responsible for high yield losses worldwide. The assessment of the distribution of both mating type idiomorphs was studied in several wheat-growing areas in North Algeria. Both mating types occurred at all spatial scales tested and showed an equal frequency distribution at the country level, with 53% for Mat1-1 and 47% for Mat1-2. At finer scales, co-occurrence of both mating types was found in 38% of leaves analyzed and 44% of the studied lesions. Additionally, efficacy reduction of strobilurin applications prompted us to study strobilurin resistance conferred by the G143A substitution in the mitochondrial cytochrome b gene, which was found for the first time in six strains. The results suggest that the Algerian Z. tritici population undergoes frequent sexual reproduction mirrored by co-occurrence of both mating types, which likely will rapidly increase the fraction of strobilurin-resistant isolates in the Algerian population, as has been shown in all other regions where strobilurin resistance surfaced.

Infraspecific diversity in a spore-dispersed species with limited distribution range

Infraspecific genetic diversity is generally underestimated in biodiversity assessments. We use haplotype patterns based on the nuclear gpd and plastid rpl16 to examine whether genetic diversity is related to geography, gender, habitat and/or frequency of sexual reproduction in Drepanocladus lycopodioides. This moss is restricted to western Eurasian semi-natural and natural habitats and decreases in frequency in many parts of Europe. Haplotype diversity differs among three regional populations (Öland, Gotland, Stockholm archipelago) in its South Swedish Baltic core distribution area and is positively affected by patch size. The regional populations differ from each other genetically and haplotype variation is unequally partitioned between the genders, most likely a result of immigration history and limited equalizing effects of sexual reproduction. In a Holocene context, the regional populations of Öland and Gotland display evidence of a decrease or bottleneck, and immigration into both regions. We suggest that higher haplotype diversity in Gotland and Öland and lack of migration to the Stockholm archipelago may be an effect of longer colonization history of the former, and niche pre-emption in the natural habitats of the latter. The Baltic population is representative for the genetically relatively homogeneous European population, and D. lycopodioides displays low ITS variation compared with other European mosses. In a conservation context it is relevant that the three regional populations are not interchangeable. It is of concern that three populations within the species’ core distribution are vulnerable. Our results strongly suggest that infraspecific genetic diversity must be considered in the management of the species at the continental level.

Characterization of Pseudoperonospora cubensis isolates from Europe and Asia using ISSR and SRAP molecular markers

Downy mildew caused by Pseudoperonospora cubensis is a major disease of cucurbits worldwide. New genotypes of the pathogen have recently appeared in the USA, EU and Israel causing breakdown of genetic resistance, expansion of host range, and the appearance of a new A2 mating type. Seventy-eight P. cubensis isolates were collected during 1996–2011 from cucurbits fields in different regions of Turkey, Israel and the Czech Republic and genetic diversity was analysed using highly polymorphic ISSR and SRAP molecular markers. The data acquired showed remarkable genetic diversity within and among the isolates. While isolates from Turkey and Czech Republic exhibited uniform genetic background, the isolates from Israel were clearly distinguished from the others. The results may indicate on migration and/or frequent sexual reproduction of the pathogen in Israel. Moreover the selected markers can be suggested for monitoring genetic diversity within P. cubensis isolates in further studies.

Mixed asexual and sexual reproduction in the Indo-Pacific reef coral Pocillopora damicornis.

Pocillopora damicornis is one of the best studied reef-building corals, yet it's somewhat unique reproductive strategy remains poorly understood. Genetic studies indicate that P. damicornis larvae are produced almost exclusively parthenogenetically, and yet population genetic surveys suggest frequent sexual reproduction. Using microsatellite data from over 580 larvae from 13 colonies, we demonstrate that P. damicornis displays a mixed reproductive strategy where sexual and asexual larvae are produced simultaneously within the same colony. The majority of larvae were parthenogenetic (94%), but most colonies (10 of the 13) produced a subset of their larvae sexually. Logistic regression indicates that the proportion of sexual larvae varied significantly with colony size, cycle day, and calendar day. In particular, the decrease in sexual larvae with colony size suggests that the mixed reproductive strategy changes across the life of the coral. This unique shift in reproductive strategy leads to increasingly asexual replications of successful genotypes, which (in contrast to exclusive parthenogens) have already contributed to the recombinant gene pool.

Genotypic diversity and migration patterns of Phytophthora infestans in the Nordic countries

In this study we investigated the genotypic diversity and the migration patterns of Phytophthora infestans in the Nordic countries. Isolates of P. infestans from outbreaks in 43 fields sampled in 2008 were collected using stratified sampling with country, field, and disease foci as the different strata. Microsatellites were used as markers to determine the genotypic variation in the sampled material. The results show a high genotypic variation of P. infestans in the Nordic countries with most of the genotypes found only once among the collected isolates. The major part of the genotypic variation was observed within the fields, with low differentiation between the fields. The observed low association of alleles among loci is consistent with frequent sexual reproduction of P. infestans in the Nordic countries. Coalescence analyses did not support a single common population for the four countries, thus indicating some degree of geographic differentiation. The analyses of migration patterns showed differing levels of gene flow among the Nordic countries. No correlation between migration rates and geographical distance could be seen. This could be explained by different degrees of genetic similarity between the pathogen populations in the different countries.

Reproduction and dispersal in an ant‐associated root aphid community

Clonal organisms with occasional sex are important for our general understanding of the costs and benefits that maintain sexual reproduction. Cyclically parthenogenetic aphids are highly variable in their frequency of sexual reproduction. However, studies have mostly focused on free-living aphids above ground, whereas dispersal constraints and dependence on ant-tending may differentially affect the costs and benefits of sex in subterranean aphids. Here, we studied reproductive mode and dispersal in a community of root aphids that are obligately associated with the ant Lasius flavus. We assessed the genetic population structure of four species (Geoica utricularia, Tetraneura ulmi, Forda marginata and Forda formicaria) in a Dutch population and found that all species reproduce predominantly if not exclusively asexually, so that populations consist of multiple clonal lineages. We show that population viscosity is high and winged aphids rare, consistent with infrequent horizontal transmission between ant host colonies. The absence of the primary host shrub (Pistacia) may explain the absence of sex in three of the studied species, but elm trees (Ulmus) that are primary hosts of the fourth species (T.ulmi) occurred within a few km of the study population. We discuss the extent to which obligate ant-tending and absence of primary hosts may have affected selection for permanent parthenogenesis, and we highlight the need for further study of these aphids in Southern Europe where primary hosts may occur close to L.flavus populations, so that all four root aphid species would have realistic opportunities for completing their sexual life cycle.

The Geographic Mosaic of Sex and the Red Queen

The maintenance of sexual reproduction in natural populations is a pressing question for evolutionary biologists. Under the "Red Queen" hypothesis, coevolving parasites reduce the reproductive advantage of asexual reproduction by adapting to infect clonal genotypes after they become locally common. In addition, the "geographic mosaic" theory of coevolution proposes that structured populations of interacting species can produce selection mosaics manifested as coevolutionary "hot spots" and "cold spots". Here, we tested whether a steep, habitat-specific cline in the frequency of sexual reproduction in a freshwater snail could be explained by the existence of hot spots and cold spots for coevolving parasites. We found that the shallow-water margins of lakes, where sexual reproduction is most common, are coevolutionary hot spots, and that deeper habitats are cold spots. These results are consistent with the geographic mosaic theory, in that the intensity of selection resulting from biological interactions can vary sharply in space. The results also support the Red Queen hypothesis, in that sex is associated with coevolutionary hot spots for virulent parasites.

Frequent sexual reproduction and high intraspecific variation in Salix arctica: Implications for a terrestrial feedback to climate change in the High Arctic

Genetic variation at molecular loci may underlie important variation in the phenotypes of arctic plants. Such intraspecific variation may be a neglected but important component of biological diversity in the Arctic that could impact how arctic ecosystems respond to climate change. Here, we characterized genetic and phenotypic variation in Salix arctica and evaluated the effect of S. arctica on ecosystem CO2 exchange, a process by which terrestrial ecosystems in the Arctic feedback to the global climate system. We found high genetic variation at microsatellite loci of S. arctica collected from an inland and a coastal site in Greenland that indicates sexual reproduction has occurred frequently as the ice sheet has retreated. Across the North American range of S. arctica, ten chloroplast DNA haplotypes were identified. Haplotype diversity and allelic richness were high overall and similar across regions with different glacial histories. Phenotypic variation in ecologically important traits varied substantially in a High Arctic population of S. arctica. In a widespread High Arctic ecosystem, a net loss of CO2 to the atmosphere was observed except where S. arctica was present. We suggest that high genetic variation in S. arctica is in part a result of frequent sexual reproduction, and that the phenotypic variation we observed is likely to be at least partially genetic‐based. This would enable a productive High Arctic species to adapt and potentially prosper as climate changes, and thus affect the terrestrial feedback of the Arctic to the climate system.

Population structure of the rice sheath blight pathogen Rhizoctonia solani AG-1 IA from India

The population structure of Rhizoctonia solani AG-1 IA causing rice sheath blight from India was evaluated for 96 isolates using seven RFLP loci. Nineteen of the isolates did not hybridise to R. solani AG-1 IA RFLP probes and rDNA analyses subsequently confirmed that they were either Ceratobasidium oryzae-sativae isolates or another Rhizoctonia sp. The population structure of the remaining 77 R. solani AG-1 IA Indian isolates was similar to that of a previously characterized Texas population. Clonal dispersal of R. solani AG-1 IA in India was moderate within fields and no clones were shared among field populations. Low levels of population subdivision and small genetic distances among populations were consistent with high levels of gene flow. Frequent sexual reproduction was indicated by the fact that most populations were in Hardy–Weinberg equilibrium (HWE). The two loci (R68 and R111) that deviated significantly from HWE showed an excess of heterozygosity. Although Texas and Indian populations were geographically very distant, they exhibited only moderate population subdivision, with an FST value of 0.193.

Frequency of Sexual Reproduction byMycosphaerella graminicolaon Partially Resistant Wheat Cultivars

ABSTRACT The frequency of sexual reproduction has a profound effect on the population structure and the adaptive potential of a facultatively sexual parasite. Little is known about the relationship of quantitative host resistance to the frequency of sex in pathogens. We sampled over 5,000 fungal fruiting bodies from eight different wheat cultivars over a 3-year period. The cultivars possessed varying degrees of susceptibility to Mycosphaerella graminicola, a facultatively sexual pathogen that is hetero-thallic and bipolar. The fruiting bodies were classified as M. graminicola pycnidia or ascocarps (asexual and sexual fruiting bodies, respectively), other identifiable fungi, or unidentified. In all 3 years, area under the disease progress curve (AUDPC) explained a significant proportion of the variation in ascocarps as a percentage of M. graminicola fruiting bodies (P < 0.0005). The mean percentage of M. graminicola ascocarps from all cultivars was 63% in 1998, when the epidemic was intense, and 14% in 1999, a year of low disease levels. In 2000, samples were taken at 7-day intervals from 6 June to 27 June from two cultivars with substantially different AUDPCs (788 and 2,185 percentage-days). The less diseased cultivar yielded its first M. graminicola ascocarps 1 week later than the more diseased cultivar, and respective means of ascocarps as a percentage of M. graminicola fruiting bodies across sampling dates were 20.2 and 59.3%. The ratio of sexual to asexual reproduction by M. graminicola is likely to be strongly conditioned by infection density.

Heterothallism in Peronospora farinosa f.sp. chenopodii, the causal agent of downy mildew of quinoa (Chenopodium quinoa).

Heterothallism in Peronospora farinosa f.sp. chenopodii, the causal agent of downy mildew of quinoa (Chenopodium quinoa) is reported for the first time. Downy mildew is the most important disease of this crop in the Andean region. Eight single-lesion isolates from different regions in Peru and Bolivia were crossed in all possible combinations using a detached leaf assay, to determine the mating system of the downy mildew pathogen. The presence of two mating types, P1 and P2, was revealed showing that P. farinosa f.sp. chenopodii is heterothallic. It is suggested that frequent sexual reproduction is an important evolutionary force in this pathogen in South America.

Genetic Allee effects on performance, plasticity and developmental stability in a clonal plant

Negative effects of small population size on fitness, so‐called Allee effects, may threaten population persistence even in intact habitat remnants. We studied genotypes of 14 isolated populations of the clonal plantRanunculus reptans,for which molecular genetic (RAPD‐) variability is higher for large than for small populations. In a competition‐free greenhouse environment vegetative offspring of genotypes from large populations produced more rosettes and flowers, indicating higher fitness. Within‐genotype coefficients of variation in performance traits, indicating developmental instability, were lower for genotypes from populations with higher RAPD‐variability. In competition with a taller grass, we found relative reduction in leaf length less pronounced for plants from large populations, suggesting higher adaptive plasticity. Our experimental study of a plant with predominantly vegetative reproduction suggests, that negative genetic effects of recent habitat fragmentation, which so far rather were expected in plants with frequent sexual reproduction, are more severe and more common than previously acknowledged.

Genetic variation in an apomictic grass, heteropogon contortus, in the hawaiian islands

Random amplified polymorphic DNA (RAPD) markers were used to assess genetic variation within and among Hawaiian populations of an apomictic grass, Heterogopon contortus (pili grass). From among 56 individuals sampled from six populations on O'Ahu and Hawai'i, 55 unique genotypes were detected using 33 polymorphic markers. This lack of uniformity among individuals may indicate frequent sexual reproduction in these populations. Analysis of molecular variance (AMOVA) revealed significant variation among populations (30.2%), but higher levels of variation within populations (68.1%). Cluster analysis revealed a high degree of clustering for most populations, but populations from different islands did not cluster together. The presence of among-population differentiation but lack of between-island differentiation may suggest that H. contortus was an early Polynesian introduction to the Hawaiian Islands.

Gene and genotypic diversity of Phytophthora cinnamomi in South Africa and Australia revealed by DNA polymorphisms

Phytophthora cinnamomiisolates from South Africa and Australia were compared to assess genetic differentiation between the two populations. These two populations were analysed for levels of phenotypic diversity using random amplified polymorphic DNAs (RAPDs) and gene and genotypic diversity using restriction fragment length polymorphisms (RFLPs). Sixteen RAPD markers from four decanucleotide Operon primers and 34 RFLP alleles from 15 putative loci were used. A few isolates from Papua New Guinea known to posses alleles different from Australian isolates were also included for comparative purposes. South African and Australian P. cinnamomipopulations were almost identical with an extremely low level of genetic distance between them (DmD 0:003). Common features for the two populations include shared alleles, low levels of phenotypic/genotypic diversity, high clonality, and low observed and expected levels of heterozygosity. Furthermore, relatively high levels of genetic differentiation between mating type populations (Dm South AfricaD 0:020 andDm AustraliaD 0:025 respectively), negative fixation indices, and significant deviations from Hardy‐Weinberg equilibrium, all provided evidence for the lack of frequent sexual reproduction in both populations. The data strongly suggest that both the South African and Australian P. cinnamomipopulations are introduced.

Enzyme polymorphism inPreissia quadrata (Hepaticae, Marchantiaceae)

Preissia quadrata has a high habitat specificity and a reproductive system including frequent sexual reproduction and absence of specialized asexual propagules. Fertilization is aquatic. Colonies collected in Europe, Asia, eastern and western Canada show the species to be polymorphic at the eleven isozyme loci studied. Most often, thalli of the same colony appeared genetically identical. Partitioning of genetic variation was among rather than within colonies, suggesting a clonal structure of the colonies and a species structure consisting of a series of small populations reproductively isolated from each other. Little genetic exchange between colonies growing nearby was present, but the species does not appear to consist of regionally circumscribed genetically cohesive entities. Some European and Canadian colonies had identical electrophoretic patterns. The problem of understanding the phenomena holding liverwort species together, both morphologically and genetically, remains an open question. The genetic structure of the species might be due to its past history. It might have had a continuous distribution in the northern part of the Northern Hemisphere. If so, little subsequent genetic diversification, perhaps linked to its haploid-dominant life cycle, must be supposed.

Differences in genetic structure and ecological diversity between parental forms and hybrids in a Daphnia species complex

Hybridization is a common phenomenon in Daphnia species complexes. Hybrids often dominate in Daphnia populations; therefore it is worthwhile to look for principal differences between parental and hybrid populations with respect to their genetic structure and clonal differentiation. We studied natural populations of members of the Daphnia galeata/hyalina/cucullata complex in three lakes. In one of these lakes, one parental species (D. galeata) and one hybrid (D. galeata × cucullata) were investigated more intensively. The frequency of sexual reproduction was higher in parental populations, whereas clonal diversity was higher in hybrid populations. Ecological differentiation among clonal groups was more pronounced in the D. galeata × cucullata hybrid compared to D. galeata, whereas selection intensity was weaker. These results are discussed with respect to stability of clonal groups, multiple hybridizations and selective constraints.

LIFE CYCLE OF A STEPHANODISCUS SP. (BACILLARIOPHYTA)1

ABSTRACTStudies of the life cycle of a centric diatom, tentatively identified as Stephanodiscus neoastraea Håkansson &amp; Hickel, showed that sexual reproduction occurred every year in a freshwater lake (Lough Neagh, Northern Ireland). Male and female gametes were produced in cells below 55% of the maximum diameter during a 3–4‐week period in late summer, following the return of nitrate concentrations above 10 μM NO3‐N. The frequency of sexual reproduction was linked to the cycle of diameter size reduction and regeneration. The times of largest decreases in cell diameter were during nutrient stress in summer and low light conditions in late autumn, rather than during the main spring growth period. So, environmental conditions (combined with the limited life‐spans of individual cells) affected the rate of diameter reduction and, therefore, the length of the life cycle (3–4 years).

DNA fingerprinting in clonal organisms

AbstractThe use of DNA fingerprinting to identify members of the same clone in completely or partially asexual organisms requires that the individuals within a clone share a recent common ancestor. By considering the expected distributions of band–sharing values in asexual and sexual organisms, it is shown that DNA fingerprinting may be effective in distinguishing members of the same clone, provided that the frequency of sexual reproduction is considerably greater than the minisatellite mutation rate.

Geographic patterns of genetic differentiation among sexual populations of Daphnia pulex

Previous surveys have shown that most populations of Daphnia pulex in the Great Lakes watershed reproduce by obligate parthenogenesis. Cyclically parthenogenetic populations, in which there is sexual reproduction, are confined to only a few isolated areas. The present study assessed genetic variation within and among 11 cyclically parthenogenetic populations. The results for six polymorphic enzyme loci showed that variation within the populations conformed to that expected for populations with frequent sexual reproduction. Seven of the populations sampled in 1988 were previously sampled in either 1985 or 1986. Allele frequencies determined in 1988 were very similar for the same loci sampled in previous years, and there was no evidence for the invasion of these populations by obligate parthenogens during this period. There was no significant difference in the average heterozygosity among the 11 populations. Although significant heterogeneity in allele frequencies was detected among the 11 populations for all six loci (average FST = 0.18), the pattern of population differentiation was only very weakly related to geographic distance. An analysis of gene diversity showed that the level of population differentiation for cyclically parthenogenetic D. pulex is much lower than has been observed for most other cladoceran species.