Sediments are the sink for particle-sorbed contaminants in aquatic systems and can serve as a reservoir of toxic contaminants that continually threaten the health and viability of aquatic biota. This work is a comprehensive review of published studies that investigated the genotoxicity of sediments in rivers, lakes and marine habitats. The Salmonella mutagenicity test is the most frequently used assay and accounts for 41.1% of the available data. The Salmonella data revealed mutagenic potency values for sediment extracts (in revertants per gram dry weight) that spans over seven orders of magnitude from not detectable to highly potent (10(5) rev/g). Analyses of the Salmonella data (n=510) showed significant differences between rural, urban/industrial, and heavily contaminated (e.g., dump) sites assessed using TA98 and TA100 with S9 activation. Additional analyses showed a significant positive correlation between Salmonella mutagenic potency (TA98 and TA100 with S9) and PAH contamination (r2=0.19-0.68). The second and third most commonly used assays for the analysis of sediments and sediment extracts are the SOS Chromotest (9.2%) and the Mutatox assays (7.8%), respectively. These assays are frequently used for rapid initial screening of collected samples. A variety of other in vitro endpoints employing cultured fish and mammalian cells have been used to investigate sediment genotoxic activity. Endpoints investigated include sister chromatid exchange frequency, micronucleus frequency, chromosome aberration frequency, gene mutation at tk and hprt loci, unscheduled DNA synthesis, DNA adduct frequency, and DNA strand break frequency. More complex in vivo assays have documented a wide range of effects including neoplasms and preneoplastic lesions in fish and invertebrate exposed ex situ. Although costly and time consuming, these assays have provided definitive evidence linking sediment contamination and a variety of genotoxic and carcinogenic effects observed in situ.