Flood peak magnitudes and frequency estimates are key components of any effective nationwide flood risk management and flood damage abatement program. In this study, we evaluated normalized peak design discharges (Qp) for 1,387 hydrologic unit code 16 to 20 (HUC16-20) watersheds in the White Mountain National Forest (WMNF), New Hampshire and in five Experimental Forest (EF) regions across the United States managed by USDA Forest Service (USDA-FS). Nonstationary regional frequency analysis (RFA) and single site frequency analysis (FA) with long-term high-resolution observed streamflow data along with the deterministic Rational Method (RM) and semi-empirical United States Geological Survey regional regression equation (USGS-RRE) were used. Additionally, a hydrologic vulnerability assessment was performed for 194 road culverts as a result of extreme precipitation-induced flooding on gauged and ungauged watersheds in the Hubbard Brook EF (HBR) within the WMNF. The RM outperformed the USGS-RRE in predicting Qp in the gauged and ungauged HUC16-20 watersheds of WMNF and in three other small, high-relief forest headwater watersheds—Coweeta Hydrologic Lab EF’s watershed-14, and watershed-27 in North Carolina and HJ Andrews EF’s watershed 8 in Oregon. However, the USGS-RRE performed better for larger watersheds, such as the Fraser EF’s St. Louis watershed in Colorado and the Santee EF’s watershed 80 in South Carolina. About 31 %, 26 %, and 56 % of the culverts at the HBR site could not accommodate the 100-yr Qp estimated by RFA, RM and USGS-RRE, respectively. Based on the chosen RIs and techniques, it is determined that except for one culvert with diameter = 0.91 m (36 in.), none of the culverts with diameter of 0.75 m (30 in.) or larger are hydrologically vulnerable. Our results suggest that the observation based RFA works best where multiple gauges are available to extrapolate information for ungauged watersheds, otherwise, RM is best-suited for smaller headwater watersheds and USGS-RRE for larger watersheds. Results from the hydrologic vulnerability analysis revealed that replacing undersized culverts with new culverts of diameter ≥ 0.75-m will improve flood resiliency, provided that the structure is geomorphologically safe (with minimal effects of debris flow, erosion, and sedimentation) and allows for both bank-full discharge and necessary fish passage within that design limit. This study has implications in managing road culverts and crossings at Forest Service and other forested lands for their resiliency to extreme precipitation and flooding hazards induced by climate change.