The concentrations of mercury (Hg) and lead (Pb) in feather samples of nine bird's species (n = 65) were determined from southeastern areas of Iran, Hamun International Wetlands. Hg concentrations were ranged from 0.40 to 3.00 mg/kg dry wt and from 0.38 to 1.76 mg/kg for primary and secondary feathers, respectively. Furthermore, Pb concentrations were ranged from 1.43 to 4.10 mg/kg and from 1.28 to 3.65 mg/kg for primary and secondary feathers, respectively. Deposition of metals varied significantly among the primary and secondary feathers of systematic category (families) for Hg and Pb (p < 0.001). It was found that there is a significant difference in feather Hg and Pb concentrations across species (p < 0.001) with highest concentrations in saker falcon (Falconidae) (Hg = 3.00 mg/kg and Pb = 4.10 mg/kg, primary feather) followed by little owl (Strigidae). Grey francolin (Phasianidae) contained the least amount of Hg (0.40 mg/kg) and Pb (1.43 mg/kg) in primary feather. The results showed that the highest concentrations of heavy metals were related to carnivores. Fish predators, omnivores, and insectivores were examined at the next level of metal concentration, with herbivores having the lowest concentrations of lead (1.43 mg/kg) and mercury (0.40 mg/kg). Birds with an open grasslands feeding strategy had the highest mercury and lead concentration. The average value for Pb was on the border of harmful effects (4 mg/kg). The results of this study indicate that mercury levels are lower than the threshold level for reproductive and behavioral harm (5 mg/kg).