Understanding the hydrogeology of weathered rock catchments is integral for the management of various problems related to increased salinity within the many towns of Western Australia. This paper presents the results of site characterisation investigations aimed at improving the overall understanding of the hydrogeology of the southern portion of the Augustus River catchment, an example of a weathered rock catchment. Site data have highlighted the presence of both porous media aquifers within the weathered profile and fractured rock aquifers within the basement rocks. Geophysical airborne surveys and other drilling data have identified a large number of dolerite dykes which crosscut the site. Fractured quartz veins have been found along the margins of these dolerite dykes. Detailed groundwater-level measurements and barometric efficiency estimates indicate that these dolerite dykes and fractured quartz veins are affecting groundwater flow directions, promoting a strong hydraulic connection between all aquifers, and also influencing recharge mechanisms. The hydrogeological significance of the dolerite dykes and fractured quartz veins has been assessed using a combination of high-frequency groundwater-level measurements (30-min sampling interval), rainfall measurements (5-min sampling interval) and barometric pressure fluctuations (30-min sampling interval). A conceptual model was developed for describing various hydrogeological features of the study area. The model indicates that fractured quartz veins along the margins of dolerite dykes are an important component of the hydrogeology of the weathered rock catchments.