Quantum chemical calculations employing Density Functional Theory (DFT) with 6–31G (d,p) basis sets have yielded valuable insights into the molecular structure, Frontier Molecular Orbitals (FMOs), Mulliken Charges, and Molecular Electrostatic Potential Maps of the phenyl isothiocyanate (PITC) molecule. Spectral analysis of PITC has been conducted including Fourier transform infrared (FTIR), Fourier transform Raman (FT-RAMAN), Nuclear Magnetic Resonance (NMR), and ultraviolet–visible (UV–Vis) spectroscopy by theoretical method. Additionally, global descriptive parameters and thermal properties have also been determined. The Nonlinear Optical characteristic (NLO) has been assessed in the gas phase using the same level of theory. The investigation into toxicity revealed that the studied molecule exhibits drug-like characteristics and is non-toxic. Molecular docking studies have been employed to investigate hydrogen bond interactions, elucidating the minimal binding energy of the compound. The outcomes of the docking studies strongly suggest the significant biological activity of Phenyl Isothiocyanate, emphasizing its potential as a potent phytochemical.