Acid Form Research Articles

Enhancing Gene Synthesis Security: An Updated Framework for Synthetic Nucleic Acid Screening and the Responsible Use of Synthetic Biological Materials.

In response to continuous advancements in synthetic biotechnologies and in the availability of synthetic nucleic acids to the biological research community since the publication of the 2010 HHS synthetic double-stranded DNA (dsDNA) screening framework, the U.S. government undertook a comprehensive and stakeholder-driven review and revision process. This culminated in the publication of a new screening framework for synthetic nucleic acids in October 2023, followed by an Executive Order directing departments and agencies of the U.S. government to take certain measures in support of implementing the screening framework. This review provides an overview of the process by which stakeholder comments were considered and by which the 2023 screening framework was drafted. A summary of expected impacts on the life sciences research community is also provided. Comments were solicited from synthetic biology stakeholders through the publication of two Federal Register Notices, in 2020 and 2022. The 2020 Notice elicited 15 unique responses totaling 220 pages, and the 2022 Notice elicited 26 unique responses totaling 79 pages. These were considered by a deliberative interagency group, resulting in a revised screening framework in 2023. The adoption of the 2023 screening framework, and related provisions in the Executive Order that followed, will impact researchers and biosafety officers across the U.S. bioeconomy. For instance, this screening framework is no longer limited in its recommendations to providers of synthetic dsDNA containing sequences unique to regulated pathogens or toxins, but now includes recommendations to all entities involved in the sale, use, and transfer of all forms of synthetic nucleic acids encoding genetic sequences that contribute to pathogenicity or toxicity-whether from regulated agents or not. Biosafety professionals are emerging as a critical resource for establishing and fostering a culture of biosecurity surrounding synthetic nucleic acids containing these high consequence genetic sequences. The work presented is significant because the scope of the 2010 screening framework has been expanded to include roles and responsibilities for new entities across the life sciences research landscape. This will likely impact biosafety professionals, who may be well positioned in their institutions to coordinate these new responsibilities.

Assessment of Potential Accumulation of Trifluoroacetate in Terminal Lakes.

Trifluoroacetate (TFA) is the anionic form of the shortest perfluorocarboxylic acid (PFCA) and is ubiquitous in the environment at concentrations that are typically much higher than those of other PFCAs. As a stable and nonvolatile anion, it is expected to accumulate in terminal lakes in endorheic basins. This research sampled eight terminal lakes in the Western United States to determine the degree to which TFA is concentrating in these lakes and compare the data to samples collected from three of these lakes 25 years ago. The first observation was that three of the six terminal lakes sampled had higher TFA concentrations than their input streams, while the last two lakes lacked surface water inputs at the sampling time. The TFA concentrations in Mono Lake effectively remained constant over 25 years despite the input stream concentrations increasing 6.5-fold. In contrast, Pyramid Lake concentrations increased approximately the expected amount based on a simplistic analysis of input flows and concentrations. An additional observation was that lakes in basins with agricultural activity appeared to have higher TFA concentrations, which suggests an agricultural input.

Profiling of 3-Formyl rifamycin (3-FR) from sintered fixed dose combinations (SDCs) of rifampicin and isoniazid by using RP-HPLC, LC-ESI-QTOF and UPLC/MS/MS

The rapid and severe decomposition of rifampicin in the presence of isoniazid (INH) in a gastric acidic pH environment is a well-reported phenomenon. It is important to note that the significant decomposition problem of RIF has an impact on its bioavailability, which becomes a major issue in fixed dose combinations (FDCs). In this degradation process, RIF will undergo acid hydrolysis and form 3-FR, an acid degradation product of RIF. Further, it will react with INH and form an insoluble iso-nicotinoyl hydrazone (HYD). The formed HYD is probably not stable in the acidic condition, so it will further convert into INH and 3-FR. Consequently, the generation of 3-FR in the acidic stomach environment can be a critical factor contributing to a substantial decline in RIF bioavailability and warrants careful consideration. Hence, it is imperative to explore the presence of 3-FR not only in in vitro dissolution samples but also in in vivo plasma samples. Therefore, the current study focused on the chemical analysis of 3-FR using additively manufactured sintered drug combinations (SDCs) to evaluate its formation, release and qualitative absorption in both in vitro and in vivo settings. High-performance liquid chromatography (HPLC) and liquid chromatography-electrospray ionization quadrupole time-of-flight high-resolution mass spectrometry (LC-ESI-QTOF-MS/MS) were employed for analytical investigations. The developed LC/MS-MS method was employed to investigate the presence of 3-FR in the rabbit's plasma following a single oral administration of SDCs. The study revealed the significant presence of 3-FR in both the in vitro and in vivo plasma samples obtained from the SDCs of RIF and INH. This finding indicates the potential of altering the strategy through additive manufacturing of pH-dependent SDCs to address the critical issue of RIF.

Resolving Reduce-It: A Proposal for the “Resolve-It” Study

Two recent trials of the use of fish oils in the treatment of hyperlipidemia have demonstrated totally different results. REDUCE-IT demonstrated a 25% reduction in a 5- point MACE (major adverse cardiovascular events) comprised of cardiovascular death, nonfatal myocardial infarction, nonfatal stroke, coronary revascularization, or unstable angina using a purified form of ethyl eicosapentaenoic acid (EPA) at a dose of 4 grams/day. Another similarly designed trial, STRENGTH, using a 4g carboxylic acid formulation of EPA and docosahexaenoic acid (DHA) was stopped early due to futility.

Functional interplay of lipid droplets and mitochondria.

Our body stores energy mostly in form of fatty acids (FAs) in lipid droplets (LDs). From there the FAs can be mobilized and transferred to peroxisomes and mitochondria. This transfer is dependent on close opposition of LDs and mitochondria and peroxisomes and happens at membrane contact sites. However, the composition and the dynamics of these contact sites is not well understood, which is in part due to the dependence on the metabolic state of the cell and on the cell- and tissue-type. Here, we summarize the current knowledge on the contacts between lipid droplets and mitochondria both in mammals and in the yeast Saccharomyces cerevisiae, in which various contact sites are well studied. We discuss possible functions of the contact site and their implication in disease.

Antibacterial Activity Test of the Combination of Methanol Extract of Arumanis Mango Leaves (Mangifera indica L) and Taro Leaves (Colocasia esculanta L) on Escherichia coli Bacteria Causes of Diarrhea Diseases

Arumanis mango leaves (Mangifera indica L) and taro leaves (Colocasia esculanta L) are plants that have the potential to be antibacterial and can be used as an alternative to treat infectious diseases caused by bacteria. Arumanis mango leaves contain secondary metabolite compounds, including flavonoids, alkaloids, steroids, polyphenols, tannins, and saponins, and taro leaves contain secondary metabolite compounds in the form of saponins, tannins, flavonoids, formic acid, glucosides, citric acid, and several minerals. Secondary metabolite compounds that have potential as antibacterials are flavonoids and tannins. This study aims to determine the antibacterial activity of a combination of methanol extracts of arumanis mango leaves (Mangifera indica L) and taro leaves (Colocasia esculanta L) against Escherichia coli bacteria. The research was carried out starting from the plant determination and preparation of simplisia, extraction, phytochemical screening of extracts and KLT tests, and antibacterial testing using the disc paper method. The concentration series of extract combinations used are 6.25%, 12.5%, and 25%. The antibacterial test results of the combination of arumanis mango leaf extract (Mangifera indica L) and taro leaf (Colocasia esculanta L), which showed the highest inhibition zone diameter was at a concentration of 6.25% (1:1), a concentration of 12.5% (1:2). At a concentration of 25% (2:1). From the results of this study, a single extract of arumanis mango leaves and taro leaves with a concentration of 6.25%; 12.5%; 25% and a combination of extracts in a ratio of 1:1. 1:2, 2:1, which has potential antibacterial activity against Escherichia coli bacteria, so that further research can be carried out by utilizing a combination of arumanis mango leaf extracts and taro leaves and as a source of information and insight into the combination of arumanis mango leaves and taro leaves that have antibacterial properties.

Energy Production in Microbial Fuel Cells (MFCs) during the Biological Treatment of Wastewater from Soilless Plant Cultivation

The management of drainage water (DW), which is produced during the soilless cultivation of plants, requires a high energy input. At the same time, DW is characterized by a high electrolytic conductivity, a high redox potential, and is also stable and putrefaction-free. In the present study, the natural properties of drainage water and a biotreatment method employing an external organic substrate in the form of citric acid (C/N 1.0, 1.5, 2.0) were utilized for energy recovery by a microbial fuel cell (MFC). The cathode chamber served as a retention tank for DW with a carbon felt electrode fixed inside. In turn, a biological reactor with biomass attached to the filling in the form of carbon felt served as the anode chamber. The filling also played the role of an electrode. The chambers were combined by an ion exchange membrane, forming an H letter-shaped system. They were then connected in an external electrical circuit with a resistance of 1k Ω. The use of a flow-through system eliminated steps involving aeration and mixing of the chambers’ contents. Citric acid was found to be an efficient organic substrate. The voltage of the electric current increased from 44.34 ± 60.92 mV to 566.06 ± 2.47 mV for the organic substrate dose expressed by the C/N ratio ranging from 1.0 to 2.0. At the same time, the denitrification efficiency ranged from 51.47 ± 9.84 to 95.60 ± 1.99% and that of dephosphatation from 88.97 ± 2.41 to 90.48 ± 1.99% at C/N from 1.0 to 2.0. The conducted studies confirmed the possibility of recovering energy during the biological purification of drainage water in a biofilm reactor. The adopted solution only required the connection of electrodes and tanks with an ion-selective membrane. Further research should aim to biologically treat DW followed by identification of the feasibility of energy recovery by means of MFC.

Polymeric nanoparticles containing kojic acid induce structural alterations and apoptosis-like death in Leishmania (Leishmania) amazonensis.

Leishmaniasis encompasses a cluster of neglected tropical diseases triggered by kinetoplastid phatogens belonging to the genus Leishmania. Current therapeutic approaches are toxic, expensive, and require long-term treatment. Nanoparticles are emerging as a new alternative for the treatment of neglected tropical diseases. Silk Fibroin is a biocompatible and amphiphilic protein that can be used for formulating nanoemulsions, while kojic acid is a secondary metabolite with antileishmanial actions. Thus, this study evaluated the efficacy of a nanoemulsion, formulated with silk fibroin as the surfactant and containing kojic acid (NanoFKA), against promastigote and amastigote forms of Leishmania (Leishmania) amazonensis. The NanoFKA had an average particle size of 176nm, Polydispersity Index (PDI) of 0.370, and a Zeta Potential of -32.3mV. It presented inhibitory concentration (IC50) values of >56μg/mL and >7μg/mL for the promastigote and amastigote forms, respectively. Ultrastructural analysis, cell cycle distribution and phosphatidylserine exposure showed that NanoFKA treatment induces apoptosis-like cell death and cell cycle arrest in L. (L.) amazonensis. In addition, NanoFKA exhibited no cytotoxicity against macrophages. Given these results, NanoFKA present leishmanicidal activity against L. (L.) amazonensis.

Tuning glycerol plasticization of chitosan with boric acid

Chitosan-based bioplastics are attractive biodegradable alternatives to petroleum-derived plastics. However, optimizing the properties of chitosan materials to fit a particular application or obtain a desired property is not a trivial feat. Here, we report the tunability of glycerol-plasticized chitosan films with the addition of boric acid. In combination, glycerol and boric acid form neutral complexes that alter the hydrogen-bonding face of the plasticizer and ultimately limit glycerol's ability to plasticize chitosan. Thus, we found that chitosan films containing glycerol-boric acid complexes were less flexible, had increased thermal transition temperatures, and showed more uniform morphologies. Structural, thermal, mechanical and morphological characterization was performed using ATR-FTIR, TGA and DSC, DMA, and SEM respectively. Molecular-level interactions of the neutral boron complexes and D-glucosamine, the repeat unit of chitosan, were also investigated used NMR and ATR-FTIR. The results of this work demonstrate the necessity of specific hydrogen-bonding interactions between the plasticizer and the polymer for effective plasticization, an important insight into the plasticization mechanism of chitosan films. Furthermore, the formation of complexes with glycerol is a novel and convenient method for tuning the physical properties of chitosan films.

Arabidopsis Leaf Chloroplasts Have a Specific Sphingolipidome.

Sphingolipids are ubiquitous in eukaryotes and certain prokaryotes, where they serve as vital components of biological membranes and bioactive molecules. Chloroplasts have complex membrane structures that play crucial roles in photosynthesis, but their specific sphingolipidome remains unreported. In this study, we used liquid chromatography-mass spectrometry (LC-MS/MS) to analyze the sphingolipidome of purified Arabidopsis thaliana chloroplasts. We detected 92 chloroplast sphingolipids. The chloroplast sphingolipidome differed from total leaf (TL) samples, with a higher content of free long-chain bases and hydroxyceramides and a greater proportion of complex sphingolipids with 16C fatty acid (FA) forms. Notably, chloroplast glucosylceramides were predominantly the d18:1 h16:0 and t18:1 h16:0 forms rather than the 24C FA form found in TL and other cellular structures. Comparing the sphingolipidomes of different cellular structures underscores the inhomogeneity of the intracellular distribution of sphingolipids. This provides a robust reference for further elucidating the function of sphingolipids in plant cells.

Incorporating pH into DFT-D+U and microflotation recovery studies on heterocyclic collector-pyrite interactions

This study adopted both computational and experimental approaches to design by modification of 2-mercaptobenzothiazole (MBT), 2-mercaptobenzoxazole (MBO) and 2-mercaptobenzimidazole (MBI) heterocyclic collectors by introducing a carbon sulphide (–CS2) group and forming 2-trithiocarbonatebenzothiazole (TTCBT), 2-trithiocarbonatebenzoxazole (TTCBO) and 2-trithiocarbonatebenzomidazole (TTCBI) derivatives collectors. The adsorption behaviour of the heterocyclic collectors (and derivatives) on pyrite and subsequent hydrophobicity at different pH conditions were characterised using molecular modelling and microflotation approaches, respectively. The computational adsorptions were performed on dry and hydrated surfaces in their neutral thiolate and thione (acidic) form on the pyrite (100) surface. It was found that under dry and neutral conditions the TTCBONa and TTCBTNa were more exothermic, while under dry and acidic conditions the TTCBIH was more exothermic followed by MBIH and MBTH. Under hydrated and neutral conditions MBONa was predicted as the most exothermic, while for hydrated and acidic conditions MBTH, TTCBTH and TTCBIH were more exothermic. It was found that under acidic conditions, the heterocyclic collectors were more exothermic than for neutral condition on the hydrated surface. The microflotation at pH = 8 showed that MBO achieved higher recoveries, while at pH = 6 MBT, TTCBT and TTCBI achieved higher recoveries that could reach 90 %. The derivatives under acidic conditions were found to have good recovery performance, which showed that the introduction of a –CS2 group on the exocyclic sulphur atom improved the affinity and therefore hydrophobicity of the mercapto-heterocyclic collectors on the pyrite surface, and thus these derivatives can enhance the flotation of pyrite minerals. In addition, the computational predictions complimented by experimental recoveries are essential to a meaningful development of modelling as a tool in mineral processing reagent design.

Coronary Artery Disease Is Related to Methylation Disorders Caused by the c.1286A>C MTHFR Polymorphism and to Low Serum 5-MTHF and Folic Acid Concentrations—Preliminary Results

Background: Single nucleotide polymorphisms in gene encoding is the key enzyme in the folates pathway, methyltetrahydrofolate reductase (MTHFR), which causes methylation disorders associated with coronary artery disease (CAD). We evaluated associations between methylation disorders caused by MTHFR gene polymorphisms and the blood folate concentrations (folic acid, 5-MTHF) in CAD patients. Methods: Study group: 34 patients with CAD confirmed by invasive coronary angiography (ICA). Controls: 14 patients without CAD symptoms or significant coronary artery stenosis, based on ICA or multislice computed tomography (MSCT) with coronary artery calcification (CAC) scoring. Real-time PCR genotyping was assessed using TaqMan™ probes. Folic acid and 5-MTHF concentrations in blood serum were determined using Liquid Chromatography-Mass Spectrometry (LC-MS). Results: The c.[1286A>C];[1286A>C] MTHFR polymorphism occurred significantly more often in (CAD+) patients compared to the (CAD−) cohort and to the selected general European “CEU_GENO_PANEL” population sample. The concentration of 5-MTHF and folic acid in subgroups of CAD+ patients with methylation disorders categorized by genotypes and CAD presence (CAD+) was always lower in CAD+ subgroups compared to non-CAD individuals (CAD−). Conclusions: Further studies on a larger scale are needed to implicate the homozygous c.1286A>C MTHFR variant as CAD genetic marker and the 5-MTHF as CAD biomarker. Identification of high CAD risk using genetic and phenotypic tests can contribute to personalized therapy using an active (methylated) form of folic acid (5-MTHF) in CAD patients with MTHFR polymorphisms.

Transcriptional response of Saccharomyces cerevisiae to lactic acid enantiomers

The model yeast, Saccharomyces cerevisiae, is a popular object for both fundamental and applied research, including the development of biosensors and industrial production of pharmaceutical compounds. However, despite multiple studies exploring S. cerevisiae transcriptional response to various substances, this response is unknown for some substances produced in yeast, such as D-lactic acid (DLA). Here, we explore the transcriptional response of the BY4742 strain to a wide range of DLA concentrations (from 0.05 to 45 mM), and compare it to the response to 45 mM L-lactic acid (LLA). We recorded a response to 5 and 45 mM DLA (125 and 113 differentially expressed genes (DEGs), respectively; > 50% shared) and a less pronounced response to 45 mM LLA (63 DEGs; > 30% shared with at least one DLA treatment). Our data did not reveal natural yeast promoters quantitatively sensing DLA but provide the first description of the transcriptome-wide response to DLA and enrich our understanding of the LLA response. Some DLA-activated genes were indeed related to lactate metabolism, as well as iron uptake and cell wall structure. Additional analyses showed that at least some of these genes were activated only by acidic form of DLA but not its salt, revealing the role of pH. The list of LLA-responsive genes was similar to those published previously and also included iron uptake and cell wall genes, as well as genes responding to other weak acids. These data might be instrumental for optimization of lactate production in yeast and yeast co-cultivation with lactic acid bacteria.Key points• We present the first dataset on yeast transcriptional response to DLA.• Differential gene expression was correlated with yeast growth inhibition.• The transcriptome response to DLA was richer in comparison to LLA.

Comparison of methods for enhancing gold recovery from double refractory concentrates using the technology of autoclave oxidation

The study aims to investigate the most efficient method for significant minimization of the impact of organic carbon on gold recovery from double refractory raw materials. We tested three double refractory gold-sulfide concentrates from different deposits with the content of gold from 23.5 to 40.9 g/t and total carbon from 1.2 to 9.5 wt %. Thermal treatment was carried out in a tubular rotary furnace that provided permanent temperature setting and rotation speed in the reactor. The initial concentrate was grinded as pulp in a Fritsch planetary mono mill Pulverisette 6. Autoclave oxidation was performed in Premex and Büchi titanium autoclaves. The technology of autoclave oxidation with the addition of a secondary oxidizer was found to be the most efficient, since it can increase gold recovery up to 97%. Another technology – hightemperature autoclave oxidation – also proved high performance; however, a significant increase in the residence time of the material in the autoclave (up to 120 min) at elevated temperatures is required to achieve this performance. According to the results, thermal treatment in general can provide a small increase in gold recovery (up to 4%). Due to this, it can be used as an additional processing with other methods analyzed in this article rather than as a self-sufficient technological solution. The studies revealed that the preliminary thermal treatment of concentrates entering autoclave oxidation shows a positive effect; high-temperature autoclave oxidation of concentrates with different carbon content provides high gold recovery for high-carbon concentrates; the use of a secondary oxidizer (in the form of nitric acid) also benefits the gold recovery. The high efficiency of the technology for concentrates with different carbon content allows us to recommend it for further research.

Uncovering the fragmentation and separation characteristics of sophorolipid biosurfactants with LC-MS-ESI.

This article describes the process and challenges in identifying different structures of eco-friendly biosurfactants, providing a novel database to compare results.

Hydrothermal precipitation of hematite from the model solution of zinc hydrometallurgical extraction

Abstract The effect of temperature and silicon concentration on iron precipitation and morphology of hematite particles was discussed. The results showed that increase of initial silicon centration will lead to the decrease of iron removal efficiency, and the Fe content decreases and S content increases in hematite. Increasing temperature is beneficial to increase iron removal rate and Fe content in hematite, but increasing temperature can not decrease silicon content in hematite. The content of Si in precipitate is proportional to the concentration of silicon in solution. Silicon is adsorbed on the surface of hematite in the form of silicic acid. Hematite particle was agglomerated microsphere. Increasing concentration of silicon will increase the disorder degree of hematite crystallization. With the increase of silicon concentration, the agglomeration of hematite particle was more obvious, and the average particle size of hematite particles increased. At 175 °C, the morphology of iron precipitation particles are composed of flake particles and rhomboid massive particles, but when the temperature rises to 195 °C, the agglomeration phenomenon is obvious, small flake particles agglomerate into microspherical aggregates.

TREATMENT OF BULBUS OCULI DEXTRA PROLAPSE IN MIX POM DOGS

Prolapse of the bulbus oculi is a condition where the eyeball protrudes from the eye socket, which occurs due to impact, blunt trauma, fights or tumors. A Mix Pom purebred dog, named Koko, male, 7 years old, 5.21 kg body weight and brown hair color, complained of the right eyeball protruding from the eye socket since two days. The purpose of writing this case report is to describe the process of lifting the eyeball by cutting the tissue and the nerves inside it using the enucleation technique. From physical examination and clinical signs, the case dog was diagnosed with prolapse of the dextra bulbus oculi with a fausta prognosis. Case dogs were treated with bulbus oculi enucleation surgery, which is a surgical procedure by lifting the eyeball from the eye socket. The surgery was performed under a combination of xylazine and ketamine general anesthesia. Postoperative case dogs were given cefotaxime antibiotics at a dose of 20 mg/kg body weight for two days and followed by oral antibiotic cefixime trihydrate at a dose of 10 mg/kg body weight for five days. Anti-inflammatory in the form of tolfenamic acid with a dose of 4 mg/kg body weight intramuscularly for two days and followed by oral anti-inflammatory dexamethasone tablets 0.25 mg/kg body weight (2 x daily) for five days. The results of the operation showed wound healing on the 10th day, which was indicated by the stitches that had dried and merged, and the dog was active again. Advice that can be given is that a dog suffering from bulbus oculi prolapse must be immediately acted upon, so as not to worsen the dog's condition and to prevent various complications, one of which is miasis.

Photoluminescent and Magnetic Properties of Mononuclear Lanthanide-Based Compounds Containing the Zwitterionic Form of 4-Picolinic Acid as a Ligand

A series of mononuclear lanthanide-based coordination compounds was obtained under mild synthetic conditions and fully characterized. Single-crystal X-ray diffraction reveals six isomorphic compounds of type [Ln(NO3)(4picH)2(H2O)4](NO3)2 (Ln3+ = Sm (1), Eu (2), Gd (3), Tb (4), Dy (5), Er (6)), in which 4picH is the zwitterionic form of the 4-picolinic acid. Except for compounds 3 and 6, a study into the emissive properties of the compounds was carried out, revealing a ligand-sensitized lanthanide-characteristic luminescence. Compounds 2 and 4 are candidates for luminescent probes in solution. At the same time, the chromaticity data for 5 revealed a potential white-light emitter with a correlated color temperature (CCT) value of 6570 K. Alternating current (AC) magnetic susceptibility measurements, supported by theoretical calculations, showed a field-induced slow relaxation of the magnetization and a single-ion magnet behavior for compound 5.

Protein Tyrosine Phosphatase regulation by Reactive Oxygen Species.

Protein Tyrosine Phosphatases (PTPs) help to maintain the balance of protein phosphorylation signals that drive cell division, proliferation, and differentiation. These enzymes are also well-suited to redox-dependent signaling and oxidative stress response due to their cysteine-based catalytic mechanism, which requires a deprotonated thiol group at the active site. This review focuses on PTP structural characteristics, active site chemical properties, and vulnerability to change by reactive oxygen species (ROS). PTPs can be oxidized and inactivated by H2O2 through three non-exclusive mechanisms. These pathways are dependent on the coordinated actions of other H2O2-sensitive proteins, such as peroxidases like Peroxiredoxins (Prx) and Thioredoxins (Trx). PTPs undergo reversible oxidation by converting their active site cysteine from thiol to sulfenic acid. This sulfenic acid can then react with adjacent cysteines to form disulfide bonds or with nearby amides to form sulfenyl-amide linkages. Further oxidation of the sulfenic acid form to the sulfonic or sulfinic acid forms causes irreversible deactivation. Understanding the structural changes involved in both reversible and irreversible PTP oxidation can help with their chemical manipulation for therapeutic intervention. Nonetheless, more information remains unidentified than is presently known about the precise dynamics of proteins participating in oxidation events, as well as the specific oxidation states that can be targeted for PTPs. This review summarizes current information on PTP-specific oxidation patterns and explains how ROS-mediated signal transmission interacts with phosphorylation-based signaling machinery controlled by growth factor receptors and PTPs.

Transcriptome dynamics in Artemisia annua provides new insights into cold adaptation and de-adaptation.

Plants adapt to cold stress through a tightly regulated process involving metabolic reprogramming and tissue remodeling to enhance tolerance within a short timeframe. However, the precise differences and interconnections among various organs during cold adaptation remain poorly understood. This study employed dynamic transcriptomic and metabolite quantitative analyses to investigate cold adaptation and subsequent de-adaptation in Artemisia annua, a species known for its robust resistance to abiotic stress. Our findings revealed distinct expression patterns in most differentially expressed genes (DEGs) encoding transcription factors and components of the calcium signal transduction pathway within the two organs under cold stress. Notably, the long-distance transport of carbon sources from source organs (leaves) to sink organs (roots) experienced disruption followed by resumption, while nitrogen transport from roots to leaves, primarily in the form of amino acids, exhibited acceleration. These contrasting transport patterns likely contribute to the observed differences in cold response between the two organs. The transcriptomic analysis further indicated that leaves exhibited increased respiration, accumulated anti-stress compounds, and initiated the ICE-CBF-COR signaling pathway earlier than roots. Differential expression of genes associated with cell wall biosynthesis suggests that leaves may undergo cell wall thickening while roots may experience thinning. Moreover, a marked difference was observed in phenylalanine metabolism between the two organs, with leaves favoring lignin production and roots favoring flavonoid synthesis. Additionally, our findings suggest that the circadian rhythm is crucial in integrating temperature fluctuations with the plant's internal rhythms during cold stress and subsequent recovery. Collectively, these results shed light on the coordinated response of different plant organs during cold adaptation, highlighting the importance of inter-organ communication for successful stress tolerance.