Fork John Day Research Articles

Scenario Planning Management Actions to Restore Cold Water Stream Habitat: Comparing Mechanistic and Statistical Modeling Approaches

ABSTRACTUnder the United States Clean Water Act, states are required to periodically assess state waters to determine compliance with water quality criteria (including temperature) and then to develop total maximum daily loads (TMDLs) for impaired waters as necessary to bring them into compliance. We compared the performance of mechanistic stream temperature models (HeatSource, QUAL2K, and QUAL2Kw) applied to the mainstem of three TMDL watersheds (Middle Fork John Day, OR; Wind River, WA; South Fork Nooksack, WA) with that of spatial stream network (SSN) models applied to the full watersheds and used these to evaluate the potential effectiveness of restoration strategies. SSN models performed well with slightly lesser accuracy (RMSE = 0.47–0.87) for mainstem predictions than mechanistic models (RMSE = 0.4) but provided additional benefits to inform management, including information on spatial and temporal heterogeneity of restoration effectiveness throughout the watershed. Of the four scenarios considered (restoration of riparian zones to potential natural vegetation, channel narrowing, increasing flow by restricting irrigation withdrawals, and combined applications), riparian zone restoration was consistently the most effective in reducing temperatures at the outlet, mainstem, and throughout the watersheds. Predicted restoration effectiveness for thermal regimes varied significantly both within and among watersheds. A focus on water quality criteria exceedance only at the watershed outlet or along the mainstem reach can obscure knowledge of restoration potential for fish habitat in tributaries and headwaters, potential for creation of thermal refuge areas along the mainstem critical for maintaining migration corridors, and thermal regime heterogeneity across space and time.

Integrating thermal infrared stream temperature imagery and spatial stream network models to understand natural spatial thermal variability in streams.

Under a warmer future climate, thermal refuges could facilitate the persistence of species relying on cold-water habitat. Often these refuges are small and easily missed or smoothed out by averaging in models. Thermal infrared (TIR) imagery can provide empirical water surface temperatures that capture these features at a high spatial resolution (<1m) and over tens of kilometers. Our study examined how TIR data could be used along with spatial stream network (SSN) models to characterize thermal regimes spatially in the Middle Fork John Day (MFJD) River mainstem (Oregon, USA). We characterized thermal variation in seven TIR longitudinal temperature profiles along the MFJD mainstem and compared them with SSN model predictions of stream temperature (for the same time periods as the TIR profiles). TIR profiles identified reaches of the MFJD mainstem with consistently cooler temperatures across years that were not consistently captured by the SSN prediction models. SSN predictions along the mainstem identified ~80% of the 1-km reach scale temperature warming or cooling trends observed in the TIR profiles. We assessed whether landscape features (e.g., tributary junctions, valley confinement, geomorphic reach classifications) could explain the fine-scale thermal heterogeneity in the TIR profiles (after accounting for the reach-scale temperature variability predicted by the SSN model) by fitting SSN models using the TIR profile observation points. Only the distance to the nearest upstream tributary was identified as a statistically significant landscape feature for explaining some of the thermal variability in the TIR profile data. When combined, TIR data and SSN models provide a data-rich evaluation of stream temperature captured in TIR imagery and a spatially extensive prediction of the network thermal diversity from the outlet to the headwaters.

Threats to Rearing Juvenile Chinook Salmon from Nonnative Smallmouth Bass Inferred from Stable Isotope and Fatty Acid Biomarkers

AbstractNonnative Smallmouth BassMicropterus dolomieuare increasingly sympatric with juvenile spring Chinook SalmonOncorhynchus tshawytschain the rivers of western North America. Understanding the potential effects of introduced Smallmouth Bass is essential to efficiently direct salmon management efforts, especially given the potential for upstream range expansion of Smallmouth Bass in response to the climate‐induced warming that many rivers may experience. However, the predatory and competitive threats of Smallmouth Bass to juvenile salmonids remain largely unexamined, particularly in salmon rearing areas. To address this knowledge gap, we collected stable isotope (δ13C and δ15N) and fatty acid data to assess the trophic role of Smallmouth Bass in the upstream reaches of the North Fork John Day River, a tributary of the Columbia River where the upstream invasion extent of Smallmouth Bass co‐occurs with the native predator Northern Pikeminnow and river‐rearing juvenile Chinook Salmon. We found that Smallmouth Bass and Northern Pikeminnow occupy divergent dietary niches, and there was little evidence of a strong predation or competition threat to juvenile Chinook Salmon from either predator. In addition, we found a disproportionate reliance on autochthonous resources across the entire community and low isotopic uniqueness, suggesting potential competition among the broader fish community given the scarcity of resources. Importantly, this study focused on the overlap between the upstream‐most habitats of encroaching Smallmouth Bass and downstream‐most habitats of juvenile Chinook Salmon. Therefore, the relative scarcity of rearing salmon in comparison with other available prey in this zone may limit current predation threats. The results from this study help guide resource‐limited managers that are tasked with conserving and restoring native salmonid populations.

Growth and Recruitment of Nonnative Smallmouth Bass along the Upstream Edge of Its Riverine Distribution

Nonnative species have been widely introduced, and once established, often exhibit secondary spread to new areas. For instance, after its initial introduction in the John Day River, Oregon, smallmouth bass (Micropterus dolomieu) has expanded upstream into headwater habitats. Recruitment is a key component of successful range expansion and has been highlighted as a potential bottleneck to continued expansion by smallmouth bass. We explored growth, body lengths, and survival of young-of-the-year (YOY) smallmouth bass in the North Fork John Day River to better understand the recruitment dynamics near its invasion boundary. In 2014–2015, we collected YOY across the upstream 63 km of smallmouth bass distribution at the end of the first growth season and after a winter starvation period. We found that growth, body length, and survival showed varied correspondence with patterns in water temperature. Specifically, body lengths matched temperature predictions in upstream sites (after accounting for spawning delays) where smallmouth bass density is low. By contrast, individuals achieved smaller than predicted body lengths in downstream sites where density is relatively high. Model selection revealed that temperature and age ≥ 1 density were the most important predictors of body length. Additionally, individuals predicted to be too small to survive a winter starvation period were present. Our findings reveal nuanced recruitment dynamics at the invasion boundary, where departures from temperature-based predictions point to multiple mechanisms affecting growth and survival. Understanding mechanisms operating at invasion boundaries may help develop management strategies to prevent future spread of smallmouth bass into headwater salmon habitat.

What Matters Most: Are Future Stream Temperatures More Sensitive to Changing Air Temperatures, Discharge, or Riparian Vegetation?

AbstractSimulations of stream temperatures showed a wide range of future thermal regimes under a warming climate — from 2.9°C warmer to 7.6°C cooler than current conditions — depending primarily on shade from riparian vegetation. We used the stream temperature model, Heat Source, to analyze a 37‐km study segment of the upper Middle Fork John Day River, located in northeast Oregon, USA. We developed alternative future scenarios based on downscaled projections from climate change models and the composition and structure of native riparian forests. We examined 36 scenarios combining future changes in air temperature (ΔTair = 0°C, +2°C, and +4°C), stream discharge (ΔQ = −30%, 0%, and +30%), and riparian vegetation (post‐wildfire with 7% shade, current vegetation with 19% shade, a young‐open forest with 34% shade, and a mature riparian forest with 79% effective shade). Shade from riparian vegetation had the largest influence on stream temperatures, changing the seven‐day average daily maximum temperature (7DADM) from +1°C to −7°C. In comparison, the 7DADM increased by 1.4°C with a 4°C increase in air temperature and by 0.7°C with a 30% change in discharge. Many streams throughout the interior western United States have been altered in ways that have substantially reduced shade. The effect of restoring shade could result in future stream temperatures that are colder than today, even under a warmer climate with substantially lower late‐summer streamflow.

A physical framework for evaluating net effects of wet meadow restoration on late‐summer streamflow

AbstractRestoration of degraded wet meadows found on upland valley floors has been proposed to achieve a range of ecological benefits, including augmenting late‐season streamflow. There are, however, few field and modelling studies documenting hydrologic changes following restoration that can be used to validate this expectation, and published changes in groundwater levels and streamflow following restoration are inconclusive. Here, we assess the streamflow benefit that can be obtained by wet‐meadow restoration using a physically based quantitative analysis. This framework employs a 1‐dimensional linearized Boussinesq equation with a superimposed solution for changes in storage due to groundwater upwelling and evapotranspiration, calculated explicitly using the White method. The model and assumptions gave rise to predictions in good agreement with field data from the Middle Fork John Day watershed in Oregon, USA. While raising channel beds can increase total water storage via increases in water table elevation in upland valley bottoms, the contributions of both lateral and longitudinal drainage from restored floodplains to late‐summer streamflow were found to be undetectably small, while losses in streamflow due to greater transpiration, lower hydraulic gradients, and less laterally drainable pore volume were likely to be substantial. Although late‐summer streamflow increases should not be expected as a direct result of wet‐meadow restoration, these approaches offer benefits for improving the quality and health of riparian and meadow vegetation that would warrant considering such measures, even at the cost of increased water demand and reduced streamflow.

A network model for primary production highlights linkages between salmonid populations and autochthonous resources

AbstractSpatial variation in fish densities across river networks suggests that the influence of food and habitat resources on assemblages varies greatly throughout watersheds. Conceptual models predict that in situ primary production should vary with river characteristics, but the influence of autochthonous resource availability on the capacity for river reaches to support fish is poorly understood. We estimated primary production throughout the South Fork and Middle Fork of the John Day River, Oregon, by measuring diel cycles in dissolved oxygen (DO) during July 2013. Using these data, we (1) evaluated the extent to which juvenile salmonid abundance and resource limitation correlated with areas of high gross primary production (GPP), (2) developed models to predict GPP from both site‐level measurements and remotely sensed data, and (3) made predictions of GPP across the entirety of the Middle Fork John Day River (MFJD) network and assessed the utility of these spatially continuous predictions for describing variation fish densities at broad scales. We produced reliable estimates of GPP at sites where DO loggers were deployed using measurements of solar exposure, water temperature, and conductivity measured at each site, as well as surrogates for these data estimated from remote sensing data sources. Estimates of GPP across fish sampling sites explained, on average, 58–63% of the variation in juvenile salmonid densities during the summer sampling period, and 51–83% during the fall sampling period, while continuous network predictions of GPP explained 44% of the variation in fish densities across 29 km of the MFJD. Further, GPP explained nearly half of the variation in juvenile steelhead dietary resource limitation, as inferred from bioenergetics modeling results. These results comprise a first effort at quantifying variation in autochthonous production across an entire river network and, importantly, provide a much‐needed food‐web context for guiding more effective fish and habitat management.

A geomorphic assessment to inform strategic stream restoration planning in the Middle Fork John Day Watershed, Oregon, USA

ABSTRACTA geomorphic assessment of the Middle Fork John Day Watershed, Oregon, USA, was used to generate a hierarchical, map-based understanding of watershed impairments and potential opportunities for improvements. Specifically, we (1) assessed river diversity (character and behavior) and patterns of reach types (and their controls); (2) evaluated the geomorphic condition of the streams; (3) interpreted their geomorphic recovery potential; and (4) synthesized the above into a hypothetical, strategic management plan. Collectively, these maps can set bounds and provide realistic guidance for river rehabilitation, design and implementation efforts. Fifteen distinct reach types were identified, two-thirds of which are found along perennial streams. On the basis of a variety of geo-indicators, approximately two-thirds of all perennial stream reaches were found to be in ‘good’ geomorphic condition, whereas one-third had departed to ‘moderate’ and ‘poor’ condition. Departures from ‘good’ condition were primarily related to riparian vegetation removal, conversion of floodplain to agricultural land uses (farming and grazing), logging, and channel bed dredge mining for gold. Encouragingly, the majority of reaches classified as being in moderate geomorphic condition were found to have high recovery potential. While our geomorphic assessment has practical utility for informing physically realistic expectation management for efforts like salmonid habitat restoration, the maps themselves are the key vehicle for communicating and visualizing among stakeholders.

Linking models across scales to assess the viability and restoration potential of a threatened population of steelhead (Oncorhynchus mykiss) in the Middle Fork John Day River, Oregon, USA

Species conservation is often informed by the use of models evaluating the effect of different management strategies on the status of at-risk populations. For Pacific salmon and steelhead (Oncorhynchus sp.), which have complex life cycles spanning diverse environments and jurisdictions, life-cycle models (LCMs) have proven particularly useful for this task. Yet, most salmonid LCM applications to date have not been able to tie projections of population performance to specific tributary habitat management actions, which is integral to many recovery plans. Here we describe a modelling framework that links reach-scale stream habitat models with a basin-scale LCM, bridged by statistical extrapolation models, to evaluate recovery opportunities for an imperiled population of steelhead (O. mykiss) in the Middle Fork John Day River, USA. We parameterized a LCM by leveraging results from (1) a large-scale environmental monitoring program that supports ecohydraulic modelling and characterizes habitat quality (with a salmonid emphasis) within individual stream reaches (ca. 100–600m segments), and (2) detailed demographic studies that provide estimates of survival, age structure, fecundity, etc. relevant to the model population. We then applied the model to quantify population performance under current/base (status quo) conditions and under two classes of restoration that aim to increase survival for juvenile steelhead: riparian revegetation, which reduces (otherwise limiting) stream temperatures during the warm summer months; and woody structure addition, which increases in-stream hydraulic complexity and thus juvenile rearing capacity. Status quo simulations produced abundance dynamics consistent with recent population monitoring data and the population’s current threatened status. Our evaluation of these basic restoration scenarios revealed that while both strategies have the potential to improve the conservation status of steelhead, the benefits of woody structure addition were relatively minor compared to those resulting from stream temperature reductions. Together, our findings suggest that in thermally stressed systems the benefits of wood addition will be optimized if (1) structures are added at a considerably higher rate than is often done, focusing on reaches that are not thermally limited initially, and (2) these efforts are paired with extensive riparian planting (i.e., in reaches that have the highest potential for effective shading), which will address thermal limitations (if relevant) and offer a natural source for future wood recruitment. In addition to shedding light on effective strategies for recovering steelhead, our study illustrates the power of coordinated monitoring programs that can parameterize the relationships needed to integrate modelling possibilities across scales.

Seasonal changes in spatial patterns of Oncorhynchus mykiss growth require year‐round monitoring

AbstractGrowth and movement of juvenile salmonids influence the expression of individual life history traits and production of adults at the population scale. We individually marked and recaptured juvenile Oncorhynchus mykiss over the course of a year in Murderers Creek, a semi‐arid tributary to the South Fork John Day River in Northeast Oregon. We tagged O. mykiss in three reaches with differing stream gradient, stream temperature and fish density. Mean growth rates differed significantly among reaches and seasons with a significant interaction between reach and season. Reaches with high growth rates shifted across Murderers Creek among seasons. Stream reaches with high growth during the winter had low growth during summer and vice‐versa. The proportion of individuals moving at the reach scale during summer was low (≤2.6%), suggesting that individuals did not track resources at the reach scale. The spatio‐temporal variation in growth indicates that monitoring stream salmonids across multiple seasons is necessary to accurately characterise the production of different stream reaches.

Spatiotemporal Spawning Patterns of Smallmouth Bass at Its Upstream Invasion Edge

AbstractClimate change and land‐use practices are causing widespread warming of streams, forcing resident species to adapt or migrate. For instance, in the John Day River, Oregon (Columbia River basin), rising temperatures are facilitating the range expansion of Smallmouth Bass Micropterus dolomieu into critical salmon rearing habitat. Understanding Smallmouth Bass reproductive ecology at its range boundaries is integral to understanding and ultimately predicting its upstream range expansion. We addressed this knowledge gap by exploring potential temperature‐mediated effects on Smallmouth Bass reproduction at the leading edge of its nonnative riverine distribution in the Pacific Northwest. We used continuous snorkel surveys to characterize its upstream extent in the North Fork John Day River, where we observed spawning patterns and measured adult nest‐guarding male size, fecundity, brood development, habitat attributes, and nest success over 2 years (2014, 2015). We found a pattern of asynchronous and protracted spawn timing across the leading invasion edge, &gt;90% nest success, and few changes in reproductive attributes (e.g., fecundity, brood development) as the thermal regime became increasingly colder. We also found increased selectivity of nest substrata and decreased guarding requirements in upstream habitats. These results suggest that reproductive success does not limit the upstream range expansion of Smallmouth Bass and highlight potential ecological benefits that may offset the energetic demands associated with dispersing upstream. Overall, our findings enhance the current understanding of how reproduction influences range expansion of nonnative Smallmouth Bass populations in streams, enabling us to better guide managers tasked with minimizing the spread of this nonnative species in the future.Received November 2, 2015; accepted February 1, 2016 Published online June 15, 2016

Riverscape mapping with helicopter-based Structure-from-Motion photogrammetry

Recent developments in the remote sensing of fluvial systems have provided researchers with unprecedented views on the complexity of rivers. An aerial perspective is key to mapping and understanding the river at a variety of spatial scales. I employed a helicopter-mounted digital SLR camera and Structure-from-Motion (SfM) photogrammetry to bridge the gap between smaller scale aerial surveys from platforms like small unmanned aerial systems and larger scale commercial aerial photography or airborne LiDAR collections. This low-cost solution produced high spatial resolution aerial photography and digital elevation models for a 32-km segment of the Middle Fork John Day River in east central Oregon. Using these data, I extracted channel morphology data at 3-m intervals downstream and took an inductive approach to evaluating the controls on channel morphology and the human influences on the river using a combination of segment-scale and hyperscale analyses. The SfM process produced 10cm/pixel orthophotographs and DEMs with submeter horizontal accuracy, but the DEMs suffered from a systematic distortion that resulted from the parallel camera geometry of the flight plan. The riverscape has been affected by human actions such as mining, cattle grazing, and restoration; however, differentiating a human signal from the natural patterns of channel morphology was difficult. The hyperscale analysis provided insight into several interesting downstream patterns in channel morphology that, with further analysis, could provide explanations on the physical controls of channel morphology. Overall, SfM has the potential to be a powerful, low-cost addition to the fluvial remote sensing toolkit.

Bed conduction impact on fiber optic distributed temperature sensing water temperature measurements

Abstract. Error in distributed temperature sensing (DTS) water temperature measurements may be introduced by contact of the fiber optic cable sensor with bed materials (e.g., seafloor, lakebed, streambed). Heat conduction from the bed materials can affect cable temperature and the resulting DTS measurements. In the Middle Fork John Day River, apparent water temperature measurements were influenced by cable sensor contact with aquatic vegetation and fine sediment bed materials. Affected cable segments measured a diurnal temperature range reduced by 10% and lagged by 20–40 min relative to that of ambient stream temperature. The diurnal temperature range deeper within the vegetation–sediment bed material was reduced 70% and lagged 240 min relative to ambient stream temperature. These site-specific results illustrate the potential magnitude of bed-conduction impacts with buried DTS measurements. Researchers who deploy DTS for water temperature monitoring should understand the importance of the environment into which the cable is placed on the range and phase of temperature measurements.

Hydrologic landscape classification evaluates streamflow vulnerability to climate change in Oregon, USA

Abstract. Classification can allow for evaluations of the hydrologic functions of landscapes and their responses to stressors. Here we demonstrate the use of a hydrologic landscape (HL) approach to evaluate vulnerability to potential future climate change at statewide and basin scales in the state of Oregon. The HL classification has five components: climate, seasonality, aquifer permeability, terrain, and soil permeability. We evaluate changes when the 1971–2000 HL climate indices are recalculated using 2041–2070 simulation results from the ECHAM (European Centre HAMburg) and PCM (Parallel Climate Model) climate models with the A2, A1b, and B1 emission scenarios. Changes in climate class were modest (4–18%) statewide. However, there were major changes in seasonality class for five of the six realizations (excluding PCM_B1): Oregon shifts from being 13% snow-dominated to 4–6% snow-dominated under these five realizations, representing a 56–68% reduction in snowmelt-dominated area. At the basin scale, simulated changes for the Siletz Basin, in Oregon's Coast Range, include a small switch from very wet to wet climate, with no change in seasonality. However, there is a modest increase in fall and winter water due to increased precipitation. For the Sandy Basin, on the western slope of the Cascades, HL climate class does not change, but there are major changes in seasonality, especially for areas with low aquifer permeability, which experiences a 100% loss of spring seasonality. This would reduce summer baseflow, but effects could potentially be mitigated by streamflow buffering effects provided by groundwater in the high aquifer permeability portions of the upper Sandy. The Middle Fork John Day Basin (MFJD), in northeastern Oregon, is snowmelt-dominated. The basin experiences a net loss of wet and moist climate area, along with an increase in dry climate area. The MFJD also experiences major shifts from spring to winter seasonality, representing a 20–60% reduction in snowmelt-dominated area. Altered seasonality and/or magnitude of seasonal streamflows could potentially affect survival, growth and reproduction of salmonids in these watersheds, with the greatest effects projected for the MFJD. A major strength of the HL approach is that results can be applied to similarly classified, ungaged basins. Information resulting from such evaluations can help inform management responses to climate change at regional and basin scales without requiring detailed modeling efforts.

Modeling freshwater mussel distribution in relation to biotic and abiotic habitat variables at multiple spatial scales

The habitat requirements of many native freshwater mussels remain unclear despite their imperiled status and ecological importance. To explore scale-specific habitat associations in the three genera of mussels found in the western United States (Anodonta, Gonidea, and Margaritifera) we used a multiscale random forest modeling approach to assess functional habitat parameters throughout a 55 km segment of the upper Middle Fork John Day River in northeastern Oregon. We characterized mussel occurrence and density with respect to the hierarchical, hydrogeomorphic structure by sampling reaches of varying valley confinement and channel units nested within individual reaches. Each genus exhibited unique longitudinal trends and channel unit-use patterns. In particular, the large-scale longitudinal trends in Margaritifera occurrence were associated with hydrogeomorphic characteristics at the reach and channel unit scale, with Margaritifera densities peaking in narrow valley segments and in riffles and runs. At the scale of the channel unit, all mussel genera responded to variation in physical habitat characteristics, particularly those that indicated more stable parts of the channel. Our results suggest that spatial patterns in freshwater mussels are associated with the hierarchical structuring of the lotic ecosystem and may provide guidance to restoration efforts.

Body Size and Growth Rate Influence Emigration Timing of Oncorhynchus mykiss

AbstractJuvenile Oncorhynchus mykiss migrate extensively in freshwater during the fall. We used individual tagging to study the spatial origin, influences, and outcomes of fall migration on fish that emigrated from summer rearing tributaries during the fall (early emigrants) and those that did not (late emigrants) in the South Fork John Day River, Oregon. Fall migration amplified body size differences between early and late emigrants. There were more early emigrants from a lower‐gradient stream than from a higher‐gradient stream. Early emigration was positively related to individual summer growth rate and fall body size. Oncorhynchus mykiss dispersed downstream into higher‐order streams during the fall. Early emigrants shifted to an alternative location and experienced significantly greater winter growth than did late emigrants that remained in tributaries. Early emigrants initiated smolt migration sooner the following spring than did late emigrants. Early and late emigration from the South Fork John Day River was associated with asynchronous emigrant‐to‐adult survival rates.

The Influence of Release Strategy and Migration History on Capture Rate of Oncorhynchus mykiss in a Rotary Screw Trap

AbstractRotary screw traps are used in rivers throughout the west coast of North America to capture emigrating juvenile salmonids. Calibrating the capture efficiency of each trap is essential for valid estimates of fish passage. We released PIT‐tagged Oncorhynchus mykiss upstream of a rotary screw trap in the South Fork John Day River, Oregon, to estimate capture efficiency. We used three strategies for release of fish recently captured in the trap. We recaptured 28% of medium‐sized fish (86–145 mm FL) and 14% of large‐sized fish (146–230 mm FL) released during daylight 1.6 km upstream from the trap. We recaptured 33% of medium‐sized fish and 17% of large‐sized fish released during daylight 4.8 km upstream from the trap. We recaptured 42% of medium‐sized fish and 23% of large‐sized fish released at twilight 1.8 km upstream from the trap. A PIT tag antenna detected summer‐tagged parr (which were PIT‐tagged upstream 1–5 months before migration) as they approached the trap to evaluate potential bias from reduced recapture of recently trapped fish. We captured 53% of the medium‐sized first‐time migrants and 40% of the large‐sized first‐time migrants. Although average capture efficiencies of first‐time migrants were greater than those from any of the recently trapped fish from the three release strategies, twilight releases of recently trapped fish were the least negatively biased, especially for medium‐sized fish.Received May 7, 2012; accepted December 6, 2012

Reproductive Biology ofAnodonta californiensis, Gonidea angulata,andMargaritifera falcata(Bivalvia: Unionoida) in the Middle Fork John Day River, Oregon

The reproductive biology of the California floater (Anodonta californiensis), western ridged mussel (Gonidea angulata) and western pearlshell (Margaritifera falcata) was studied in the Middle Fork John Day River from May 2005 to July 2011. Anodonta californiensis was gravid from early May to late July. Mature A. californiensis glochidia were hooked, rust-colored, sub-triangulate, averaged 276 µm in length, and were similar in size to other glochidia of the genus Anodonta. Gravid G. angulata were found only in June. Mature G. angulata glochidia were hookless, white, sub-round, and averaged 171 µm in length, similar to the oval pigtoe (Pleurobema pyriforme). Margaritifera falcata were gravid in early May. Mature M. falcata glochidia were hookless, white, sub-round, and averaged 55 µm in length, a size and shape similar to the spectacle case (Cumberlandia monodonta). Anodonta californiensis glochidia were found attached to six wild-caught fish species from early June to late July. In contrast, G. angulata glochidia were found attached only to wild-caught sculpin (Cottus sp.) in late July. No M. falcata glochidia were observed on fish in the field. In laboratory experiments, speckled dace (Rhinichthys osculus) was a confirmed primary host and the longnose dace (R. cataractae), and margined sculpin (Cottus marginatus) served as unconfirmed primary hosts for A. californiensis. Margined and shorthead sculpin (C. confusus) were identified as unconfirmed primary hosts for G. angulata.

Diurnal timing of warmer air under climate change affects magnitude, timing and duration of stream temperature change

AbstractStream temperature will be subject to changes because of atmospheric warming in the future. We investigated the effects of the diurnal timing of air temperature changes – daytime warming versus nighttime warming – on stream temperature. Using the physically based model, Heat Source, we performed a sensitivity analysis of summer stream temperatures to three diurnal air temperature distributions of +4 °C mean air temperature: i) uniform increase over the whole day, ii) warmer daytime and iii) warmer nighttime. The stream temperature model was applied to a 37‐km section of the Middle Fork John Day River in northeastern Oregon, USA. The three diurnal air temperature distributions generated 7‐day average daily maximum stream temperatures increases of approximately +1.8 °C ± 0.1 °C at the downstream end of the study section. The three air temperature distributions, with the same daily mean, generated different ranges of stream temperatures, different 7‐day average daily maximum temperatures, different durations of stream temperature changes and different average daily temperatures in most parts of the reach. The stream temperature changes were out of phase with air temperature changes, and therefore in many places, the greatest daytime increase in stream temperature was caused by nighttime warming of air temperatures. Stream temperature changes tended to be more extreme and of longer duration when driven by air temperatures concentrated in either daytime or nighttime instead of uniformly distributed across the diurnal cycle. Copyright © 2012 John Wiley &amp; Sons, Ltd.

Spatiotemporal patterns and habitat associations of smallmouth bass (Micropterus dolomieu) invading salmon‐rearing habitat

Summary1. Smallmouth bass (Micropterus dolomieu) have been widely introduced to fresh waters throughout the world to promote recreational fishing opportunities. In the Pacific Northwest (U.S.A.), upstream range expansions of predatory bass, especially into subyearling salmon‐rearing grounds, are of increasing conservation concern, yet have received little scientific inquiry. Understanding the habitat characteristics that influence bass distribution and the timing and extent of bass and salmon overlap will facilitate the development of management strategies that mitigate potential ecological impacts of bass.2. We employed a spatially continuous sampling design to determine the extent of bass and subyearling Chinook salmon (Oncorhynchus tshawytscha) sympatry in the North Fork John Day River (NFJDR), a free‐flowing river system in the Columbia River Basin that contains an upstream expanding population of non‐native bass. Extensive (i.e. 53 km) surveys were conducted over 2 years and during an early and late summer period of each year, because these seasons provide a strong contrast in the river’s water temperature and flow condition. Classification and regression trees were applied to determine the primary habitat correlates of bass abundance at reach and channel‐unit scales.3. Our study revealed that bass seasonally occupy up to 22% of the length of the mainstem NFJDR where subyearling Chinook salmon occur, and the primary period of sympatry between these species was in the early summer and not during peak water temperatures in late summer. Where these species co‐occurred, bass occupied 60–76% of channel units used by subyearling Chinook salmon in the early summer and 28–46% of the channel units they occupied in the late summer. Because these rearing salmon were well below the gape limitation of bass, this overlap could result in either direct predation or sublethal effects of bass on subyearling Chinook salmon. The upstream extent of bass increased 10–23 km (2009 and 2010, respectively) as stream temperatures seasonally warmed, but subyearling Chinook salmon were also found farther upstream during this time.4. Our multiscale analysis suggests that bass were selecting habitat based on antecedent thermal history at a broad scale, and if satisfactory temperature conditions were met, mesoscale habitat features (i.e. channel‐unit type and depth) played an additional role in determining bass abundance. The upstream extent of bass in the late summer corresponded to a high‐gradient geomorphic discontinuity in the NFJDR, which probably hindered further upstream movements of bass. The habitat determinants and upstream extent of bass were largely consistent across years, despite marked differences in the magnitude and timing of spring peak flows prior to bass spawning.5. The overriding influence of water temperature on smallmouth bass distribution suggests that managers may be able limit future upstream range expansions of bass into salmon‐rearing habitat by concentrating on restoration activities that mitigate climate‐ or land‐use‐related stream warming. These management activities could be prioritised to capitalise on survival bottlenecks in the life history of bass and spatially focused on landscape knick points such as high‐gradient discontinuities to discourage further upstream movements of bass.