Plant species diversity of black alder-dominated forests was studied in three biogeographical regions (Alpine, Continental and Pannonian) of Central Europe. They were represented by regions of the Polish Plain (Continental), the High Western Carpathians and Matricum of the Western Carpathians (Alpine) and the Pannonian lowland (Pannonian). We analysed 35 plots per region in order to identify: i) local alpha (α) diversity defined as the counted number of plant taxa occurring in a single sampling plot, ii) amongst-site beta (β) diversity, iii) regional (γ) diversity defined as the total species richness of all sampling plots and iv) zeta diversity (ζ) as a generalisation of beta diversity. We recorded a total of 432 vascular plant taxa in all bioregions; more than 13% were alien plants. Statistically significant differences in species richness (α) of both native and alien plants were found between assemblages of the regions. The High Western Carpathians showed the highest native and the lowest alien plant species richness. Total β-diversity was high in all regions, but significantly differed amongst regions only for alien plant species. Cumulative native and alien species richness (γ) was the highest and lowest in the High Western Carpathians and Matricum of Western Carpathians, respectively. Our results identified the High Western Carpathians as a hotspot for diversity of native plants in Central European black alder-dominated forests.