Abstract Effects of logging on preferred winter habitats of juvenile salmonids in southeastern Alaskan streams were assessed by comparing the area of preferred winter habitat in 54 reaches of 18 streams. Three types of streams were sampled at each of six locations: a stream in a mature, undisturbed forest; a stream in a clear-cut area but logged on at least one bank; and a stream in a clear-cut area with strips of forest (buffer strips) along the stream bank. To identify preferred winter habitats, we classified stream areas in 12 of 18 streams into discrete habitat types and compared the density of salmonids within these habitat types with average density of the entire reach. Most wintering coho salmon (Oncorhynchus kisutch), Dolly Varden (Salvelinus malma), and steelhead (Salmo gairdneri) occupied deep pools with cover (i.e., upturned tree roots, accumulations of logs, and cobble substrate). Riffles, glides, and pools without cover were not used. Seventy-three percent of all pools were formed by large or...