The last remaining Dragon Tree Forest on Earth survives on a small plateau (Roqeb di Firmihin) in Socotra Island (Yemen). The Socotran Dragon’s Blood Tree (Dracaena cinnabari Balf. f.) is endemic to the Socotra Archipelago UNESCO World Heritage Site. Being a culturally important and endangered tree species, its conservation is a priority. Despite this, a complete inventory of the Firmihin Dracaena forest (14.9 km2) has never been attempted before. We applied the use of unmanned aerial vehicles (UAVs) for the first time in conserving the Socotran Dragon’s Blood Tree. A pair of UAVs (small drones) were used during field surveys in 2021 to spatially describe individual tree positions, tree density, mortality, and the forest age structure. Aerial images were processed into a single orthophoto image of high spatial resolution (8 cm/pixel) used for detailed analysis. We applied image-enhancement techniques, used object-based classification, and corrected every entry manually during the inventory process. In total 35,542 individual living trees and 2123 uprooted trees were inventoried. The mean age of the forest, based on crown age (derived from crown size) was estimated at an average of ca. 300 years (291.5 years) with some individuals older than 500 years. Our analysis reveals that the trajectory of recent cyclones and the average direction of fallen trees in Firmihin are correlated, suggesting that intensified winds (as a result of global warming) catalyze the decline of the overmature forest. Our study illustrates the use of UAVs in collecting crucial data for the conservation and threat assessment of endangered tree species in Socotra, and regular drone inventories could be applied (e.g., after future cyclone events or landslides) to better evaluate the status of these vulnerable island ecosystems.