Foraminiferal Communities Research Articles

Using foraminifera to assess changes in marine coastal habitats of Caribbean Panama since the Middle Holocene

Humans settled the Bocas del Toro archipelago of Caribbean Panama ~690 CE. Coastal land was cleared for agriculture in the late 1880s and in recent decades water quality degradation has been detected. To investigate changes that support a decline in water quality and to assess differences in salinity caused by increased runoff from cleared lands, benthic foraminifera of Almirante Bay served as an environmental proxy to compare modern and Middle Holocene times. The foraminiferal community structure of 17 modern mangrove, seagrass, and coral reef habitats <2 m deep was analyzed in combination with 18 samples of ~6600-year-old coral reef, seagrass and muddy molluscan biofacies from Isla Colón island.The foraminiferal communities' species and diversity overlap considerably among habitats of both ages, and there is more difference in species' proportions between the ages than among habitats of either age. These patterns reflect high connectivity across adjacent habitats in this embayed, patch-reef setting. Assemblages from Middle Holocene molluscan muds and modern mangroves are least diverse, fairly similar, and well differentiated from those of seagrass and coral habitats. Foraminiferal wall structure suggests more freshwater input in modern times, consistent with forest clear-cutting for agriculture, although both ages fall within the low end of normal salinity. Increased freshwater input influenced assemblage changes but they were not sufficient to reduce measured diversity. Reported declines in the bay's water quality have also not resulted in net foraminiferal diversity loss from ~6600 years ago, indicating substantial resilience in these extremely shallow, tropical coastal communities.

Environmental DNA sheds new insight on molecular adaptation of foraminifera to temperature from laboratory-controlled culture experiment.

Foraminifera is the most important temperature proxy of the ocean on long time scales. However, the absence of temperature-controlled experiments at different water depths hinders the advancement of paleotemperature reconstruction with foraminifera from the continental shelf. For the first time, this study investigated the response of benthic foraminifera to temperature change using microcosm culture and metabarcoding. Foraminiferal communities from three continental stations at varying water depths (6.0, 9.2, and 26.0 m) were cultured under five temperature gradients (6, 12, 18, 24, and 30°C), with each treatment performed in triplicate. The foraminifera were fed with microalgae every 4 days, and the filtered seawater (through 0.22 μm pores), acting as a medium, was changed accordingly. The experiment lasted for 80 days, and 47 DNA samples were obtained and analyzed, including three insitu samples. The results showed that foraminifera adjusted its growth rate within the low-temperature range and adopted an r-strategy to cope with high-temperature stress. In addition, the foraminifera from deeper water stations exhibited a pronounced vulnerability to diminishing read counts. The read counts, operational taxonomic units (OTU) counts and Margalef index of foraminifera and the read counts of Rotaliida exhibited a remarkably positive correlation with temperature. The recommended relationships were described as read counts = 1314.75*T + 44754.51; OTU counts = 1.13*T + 44.26; Margalef index =1.13*T + 44.26. This study established the first quantitative relationship between temperature and foraminifera molecular parameters that holds significant implications for long-time paleotemperature calibration in climate change.

Ecological patterns of benthic foraminiferal communities driven by seasonal and spatial environmental gradients in an Arctic fjord

AbstractArctic fjords, being transitional areas between glacier‐covered land and the ocean, are characterized by strong environmental gradients. The seasonal melting of glaciers generates strong turbidity and primary production antagonist gradients, which can affect benthic habitats. Two sampling campaigns were carried out in Kongsfjorden (Svalbard, Arctic Ocean) in May and August 2021 to investigate seasonal changes in benthic foraminifera spatial distribution and ecosystem functioning along a longitudinal transect of 10 km from the Kronebreen tidewater glacier front. Concurrently, organic matter quantity and biochemical composition, sediment grain size, and physical parameters of the water masses were investigated as possible driving factors of benthic ecosystem responses. In a previous study, three statistically determined foraminiferal biozonations (glacier proximal, medial, and distal) were observed on the basis of their species content within the closest 10 km from the glacier front, presenting similar assemblages in both seasons. Our results indicate that foraminiferal distribution at the local scale is mainly driven by physical and geochemical gradients induced by melting waters and sediment discharges from the tidewater glacier occurring during summer. Due to the climate change, the melting season is expected to last longer and increasing global temperature will much probably accelerate the melting processes. Our findings strongly support the use of foraminifera as bioindicators to monitor the effects of ongoing climate change on the benthic ecosystems of Arctic fjords and, accessorily, as proxies for reconstructing glacier front positions in the recent past.

The evolution and relationship of the Yellow Sea warm current and the Yellow Sea Cold Water Mass since the Mid-Holocene and possible ENSO influences

The Yellow Sea Warm Current (YSWC) and Yellow Sea Cold Water Mass (YSCWM) are crucial components of Yellow Sea oceanic dynamics. Investigating their historical relationships since the mid-Holocene, as demonstrated by modern observations, is highly important. We reconstructed their evolution using 37 surface sediment samples and core Z1 from the Yellow Sea. Basic end-member analysis of core sediment grain sizes revealed that end-member two had a dominant peak at 12 μm, indicating the evolution of the YSWC. The analysis of the structure of benthic foraminiferal communities in surface sediments indicated that the combination of Ammonia ketienziensis, Hanzawaia nipponica, and Astrononion italicum serves as a reliable indicator of the evolution of the YSCWM. By integrating sedimentological and micro-palaeontological evidence with published organic geochemical findings, we elucidated high-resolution evolutionary records of the YSWC and YSCWM since the mid-Holocene. Our findings indicate that the YSWC underwent rapid intensification with significant fluctuations during ∼6.0–3.9 ka. It then decreased to modern levels between ∼3.9 ka and ∼1.9 ka, remaining relatively stable during ∼1.9–0.0 ka, with enhancements noted at ∼1.4 ka and ∼0.3 ka. The YSCWM evolved synchronously with the YSWC after ∼6.0 ka, weakened and then strengthened during ∼6.0–1.9 ka, and maintained relative stability during ∼1.9–0.0 ka, with decreases observed at ∼1.4 ka and ∼0.3 ka. The YSWC and YSCWM exhibited opposite changes, similar to modern oceanographic patterns, except for synchronous variations during ∼4.0–3.9 ka, when the YSCWM was formally established. The decoupling of the YSCWM and the YSWC during ∼4.0–3.9 ka and the significant enhancements of the YSCWM at ∼2.5 ka and ∼2.0 ka when the YSWC slightly weakened are associated with the substantial influence of the ENSO climate phenomena on the coastal regions of East Asia from ∼4.0 ka to ∼1.9 ka. We propose that the YSCWM is more sensitive to ENSO, potentially making it more suitable for reconstructing the palaeoceanography and palaeoclimatology of the Yellow Sea.

Response of inner shelf benthic foraminiferal community to different concentrations of dissolved oxygen under laboratory culture experiment

Dissolved oxygen, a vital parameter for a majority of marine organisms, may decline in the near future due to anthropogenic eutrophication in coastal waters. The effect of depleting dissolved oxygen on the marine benthic community is difficult to assess from field studies, as dissolved oxygen often co-varies with several other parameters, especially organic matter. The controlled laboratory culture experiments can help to assess the effect of a specific parameter on marine organisms. Foraminifera constitute a substantial fraction of the marine benthic organisms, and a few species are vulnerable to depleted oxygen. A majority of the previous culture experiments have used isolated specimens of individual benthic foraminiferal species. Although such studies helped to understand the response of individual species to a particular parameter, they have to be scaled up to understand the community-level response of benthic foraminifera. Here, we assess the community-level response of the shallow subtidal benthic foraminiferal community to five different oxygen concentrations (1.67 mL/L to 5.01 mL/L) in a laboratory culture experiment. The living benthic foraminiferal abundance was considerably high at the intermediate oxygen concentration, whereas it decreased at both the lower and higher concentrations. The decreasing dissolved oxygen caused poor preservation of dead benthic foraminifera due to a drop in pH. The relative abundance trend of the species belonging to the same genus was different, suggesting a species-specific response to the dissolved oxygen. The maximum abundance at 2.91 mL/L and the varying response of individual species clearly suggest a non-linear response of the benthic foraminiferal community to the dissolved oxygen.

Benthic foraminiferal community structure and its response to environmental factors revealed using high-throughput sequencing in the Zhoushan Fishing Ground, East China Sea

Benthic foraminifera are excellent tools for monitoring marine environments and reconstructing paleoenvironments. This study investigated the structure and diversity of benthic foraminiferal communities in 20 superficial sediment samples obtained from the Zhoushan Fishing Ground (ZFG) using high-throughput sequencing based on small subunit ribosomal DNA and RNA amplification. The results revealed Rotaliida as the most dominant group, with spatial heterogeneity in foraminiferal distribution. Total benthic foraminiferal communities exhibited higher species richness and diversity compared to active communities. While heavy metal pollution in the ZFG was moderate, areas with elevated concentrations of heavy metals exhibited low diversity and richness in foraminiferal communities. Total foraminiferal community structure was primarily influenced by factors such as water depth and Hg, Pb, Cd, and Zn levels. Notably, Hg levels emerged as a critical factor impacting the structure and diversity of the active foraminiferal community. The dominant species, Operculina, exhibited tolerance toward heavy metal pollution.

Deciphering Paleoceanographic Shifts Inferred from the Foraminiferal Record of the Western Svalbard Slope (Bellsund Drift) over the Past Century

The objective of this study was to reconstruct the last century’s climatic oscillations in the Arctic region around the Fram Strait using high-resolution analysis of foraminiferal assemblages as proxies for surface and deep-water mass properties. In this area, warm Atlantic water masses are advected to the Arctic Ocean through the West Spitsbergen Current, representing the northernmost tip of the Global Thermohaline Circulation. The interaction between the cold Arctic and the warm Atlantic water masses significantly influences the entire foraminiferal community. Planktic species such as Neogloboquadrina pachyderma and Turborotalita quinqueloba are respectively used as indicators of cold Arctic water and warm Atlantic water masses. Among the main benthic species, Cibicidoides wuellerstorfi, Epistominella exigua, and Oridorsalis tener stand out, serving as proxies for the bottom water mass current velocity and paleoproductivity. The paleoenvironmental reconstruction obtained with the foraminiferal assemblages, together with data from satellite monitoring of the sea ice extent and the long-term record of the annual temperature of the West Spitsbergen Current measured over the last 50 years, support the evidence of a progressively rising heat influx into the Arctic Ocean due to an increasing Atlantic water inflow, forcing the consequent decay of the sea ice extent.

Distinct oxygenation modes of the Gulf of Oman over the past 43 000 years – a multi-proxy approach

Abstract. Changing climatic conditions can shape the strength and extent of the oxygen minimum zone (OMZ). The presence and variability of the OMZ in the Arabian Sea is of importance to the latter's ecosystem. The state of oxygenation has, for instance, an impact on the pelagic and benthic faunal community or the nitrogen and carbon cycles. It is important to understand the dynamics of the OMZ and related marine environmental conditions because of their climate feedbacks. In this study, we combined three independent proxies to reconstruct the oxygenation state of the water column and bottom water in the Gulf of Oman for the past 43 kyr approximately. This multi-proxy approach is done for the first time at the northeastern Oman margin located in the Gulf of Oman. We used bulk sedimentary nitrogen isotopes (δ15N) and the alkane ratio (lycopane +n-C35)/n-C31 and benthic foraminiferal faunal analysis to reconstruct the strength of the OMZ in the water column and bottom water oxygenation, respectively. Our results show that the Gulf of Oman experienced strong pronounced OMZ and bottom water deoxygenation during the Holocene. In contrast, during Marine Isotope Stage 2 (MIS 2), including the Last Glacial Maximum (LGM), the Gulf of Oman was very well ventilated, with a highly diverse benthic foraminiferal community. This may have been caused by stronger wind-induced mixing and better ventilation by oxygen-rich water masses. Our results also show moderate oxygenation during MIS 3, with deoxygenation events during most of the warmer Dansgaard–Oeschger (D–O) events. We propose two distinct oxygenation modes for the Gulf of Oman: (1) a stable period of either strongly pronounced water column OMZ and bottom water deoxygenation or well-oxygenated water column and bottom water conditions and (2) an unstable period of oscillating oxygenation states between moderately oxygenated (stadials) and deoxygenated (interstadials, D–O events) conditions. The unstable period may be triggered by an interstadial Atlantic meridional overturning circulation (AMOC) mode, which is required to initiate D–O events.

Biogeochemical impact of historical submarine mine tailings on benthic ecosystems in the Repparfjord (Northern Norway)

Historical copper mine tailings deposited in the Repparfjord, Northern Norway, provided new insight into the biogeochemical impact of submarine tailings disposals on high-latitude coastal ecosystems. The submarine tailings disposal in the Repparfjord represents a product of mining activities between 1972 and 1979. Their environmental impact has been extensively studied during the last decade, but geochemistry of the sediment pore water, which is crucial to assess and monitor the in-situ metal leaching and bioavailability, has never been analysed. The actual impact on the benthic fauna remains poorly known. Therefore, this study couples the pore water chemistry and the foraminiferal analysis obtained from selected sediment cores (gravity core, multicore, box cores) to examine metal stability and the past and current status of the foraminifera community. We measured down-core sulfate and trace metal concentrations and Eh-Ph and applied the Shannon index, the AZTI's Marine Biotic Index (F-AMBI) index and the foraminiferal abnormality index. This study confirms the ongoing leaching of Cu from the underlying mine tailings and release across the sediment-water interface. Leaching of Ni, Zn and Pb have been attributed to weathering of natural bedrock lithologies. The original benthic foraminiferal community disappeared almost entirely during the disposal period, and now it is dominated by stress-tolerant and opportunistic species like Bulimina marginata and Spiroplectammina biformis. Anyhow, against previous assumptions, the community composition changed, while the overall diversity and abnormalities (FAI) shell formation is unaffected by elevated Cu concentrations.

Benthic foraminiferal assemblages in the coastal zone of the yellow river delta: Environmental significance and characteristics of microbial diversity

Unicellular eukaryotes known as benthic foraminifera have sophisticated survival mechanisms and ecological environmental indicators. Ten surface samples from the Yellow River Delta's coastal region were taken for this study to analyze the distribution of foraminifera in relation to environmental factors and to examine their microbial diversity. We looked at the physicochemical aspects of the environment at each sampling site (such as pH, TN, TOC, EC, δ13C, δ15N, PAHs, etc.), and we employed 16S rRNA high-throughput sequencing analysis to look into the interactions between microbial communities and foraminiferal species. The findings demonstrated that the Yellow River Delta's advantage benthic foraminiferal species were Quinqueloculina complanata, Ammonia beccarii, and Ammonia aomoriensis, and that TOC and TN were significant determinants of the distribution of benthic foraminiferal communities. PAH enrichment in the coastal zone effects on microbial communities and benthic foraminifera are not yet readily apparent. Sediment organic carbon and nitrogen isotope analysis revealed that marine plankton may be the dominant source of organic matter in the coastal zone sediments in the research area, which was made up of both land-based and marine organic matter. It implies that foraminifera have some environmental indicators, especially when combined with the distributional traits of the benthic foraminiferal assemblages and their considerable association with environmental parameters. The findings revealed that Q. complanata was found in the Yellow River water-affected estuarine coastal zone, A. aomoriensis was significantly influenced by sediment organic matter content and reflected the estuarine and nearshore environments and the combination of Ammonia beccarii-Ammonia aomoriensis-Elphidium excavatum assemblage indicated a semi-open intertidal shallow marine environment. Additionally, benthic foraminifera showed a responsive association with microorganisms, indicating that microbial diversity may be one of the driving forces behind benthic foraminifera's ability to adjust to environmental changes. The findings of this study will open up new avenues for research into the environmental importance of coastal zone ecosystems and for understanding how benthic foraminiferal communities survive.

Deciphering the impact of decabromodiphenyl ether (BDE-209) on benthic foraminiferal communities: Insights from Cell-Tracker Green staining and eDNA metabarcoding

This study investigates the ecotoxicological effects of BDE-209, a persistent organic pollutant (POP) prevalent in Kuwait's coastal-industrial areas, on benthic foraminiferal communities. We conducted a mesocosm experiment in which we exposed benthic foraminiferal communities sampled from the coastal-industrial areas of Kuwait to a gradient of BDE-209 concentrations (0.01 to 20 mg/kg). The impact of exposure was assessed using live-staining and metabarcoding techniques. Despite the significantly different taxonomic compositions detected by the two techniques, our results show that BDE-209 significantly affects foraminiferal communities, with moderately high concentrations leading to reduced α-diversity and considerable taxonomic shifts in both molecular and morphological assemblages. At concentrations of 10 and 20 mg/kg, no living foraminifera were detected after 8 weeks, suggesting a threshold for their survival under BDE-209 exposure. The parallel responses of molecular and morphological communities confirm the reliability of both assessment methods. This study is the first to investigate the reaction of eukaryotic communities, specifically foraminifera, to POPs such as BDE-209, generating valuable insights that have the potential to enhance field studies and aid the refinement of sediment quality guidelines.

Shallow water foraminifera from Niue and Beveridge Reef (South Pacific): insights into ecological significance and ecosystem integrity.

Niue represents one of many important steppingstones facilitating the dispersal of marine organisms across the tropical Pacific Ocean. This study is part of a collaborative expedition involving National Geographic Pristine Seas, the government of Niue, Oceans 5, and the Pacific Community. We present the first survey documenting the species richness of foraminiferal communities in Niue and nearby Beveridge Reef and explore their significance for ecosystem integrity. A substantial portion (59%) of Niue's foraminiferal assemblages is Large Benthic Foraminifera (LBF), a symbiont-bearing group known as ecosystem engineers and indicators of coral reef regime shifts. LBF species reported here reflect the gradual decrease of tropical diversity from the Coral Triangle towards the central Pacific Ocean. Calcarinidae, an LBF family represented in this study by two species, is the easternmost ever recorded in published literature, and the biogeographical dispersal of this temperature-controlled group is of great importance to future global warming related studies. Foraminifera are an important component of beach development in Niue, with a close relationship between source and depositional zones. These essential ecological-sedimentary linkages highlight the importance of habitat conservation not only as a means to safeguard biodiversity, but also for its role in the island's physical framework.

Holocene paleo-redox conditions in a microbial dolomitic lake using benthic foraminifera as bioindicators

Brejo do Espinho coastal lake (LBE) is one of the few places in the world where dolomite [CaMg(CO3)2] is precipitating in the modern environment under microbially induced processes and low oxygen conditions. We use pore morphometry of the foraminifera Ammonia cf. A. veneta to evaluate paleo-O2 dynamics during the dolomitic depositional phase that took place at LBE in the late Holocene. Foraminiferal community structure was also investigated, and results were compared to bulk isotopic composition of carbonates, total organic carbon (TOC), and X-ray Diffraction of sediments (XRD). The correlation matrix (Spearman method) showed that Ammonia test pores morphometric parameters displayed significant correlations with overall biotic and geochemical data, with pore area presenting a relatively higher association. Ammonia test pores were primarily controlled by the degradation of organic matter (Pore area-TOC, r = −0.84), and foraminifera density appeared to be influenced by oxygen changes, with a higher abundance in the highest porosity intervals (Pore area-N, r = 0.82), indicating a direct effect of oxygen penetration on species dominance. These data also reveal a tolerant behavior of the low-O2 bioindicator species Quinqueloculina laevigata and A. veneta. Understanding microbe-mineral interactions is critical for interpreting paleo records, and our data provide strong support for coupling assemblage and pores analysis as paleo-O2 bioindicators for paleo-redox coastal settings.

Assessing the effect of Amphistegina lobifera invasion on infralittoral benthic foraminiferal assemblages in the Sicily Channel (Central Mediterranean)

This article documents, through a quantitative approach, the negative effect of the highly invasive species Amphistegina lobifera Larsen, 1976 on native benthic foraminiferal assemblages of coastal areas in the Sicily Channel (Central Mediterranean). A nested sampling design was applied through the comparison of benthic foraminiferal community structure across three areas that are known to be at different stages of invasion (i.e. Maltese Islands - advanced, southern Sicily – medium, and eastern Sicily - early). Results suggested that both diversity and richness of benthic foraminiferal community from the Maltese Islands were strongly modified by increased abundances of A. lobifera. In contrast, this phenomenon is less evident in southern and eastern Sicily, where the invader displayed lower abundances and the community structure was more diversified. Collected data also allowed for predicting what could happen in the near future in the whole Sicily Channel, as well as in the rest of the Mediterranean Sea.

Deep-sea response to interglacial-glacial variability on the South Australian margin over the last 94 ka

The continuous record offered by deep-sea sediments has been extensively used to constrain shifting continental and oceanographic conditions. Yet, past fluctuations in deep-sea benthic conditions and bottom-currents are in numerous parts of the globe scarcely documented, one such example being the South Australian margin. Indeed, though variations in surface water masses and continental aeolian dust and river outflow are well documented in the area, little is known about benthic environments and their dynamics during the last interglacial-glacial cycle. We focus here on benthic foraminiferal assemblages sampled from a sediment core recovered at 2420 m depth from a small plateau south of Kangaroo Island within the underwater Murray Canyons Group (South Australian margin). Benthic foraminiferal assemblages show a distinct separation between interglacial and glacial periods over the last 94 ka, and indicate that the benthic environment was well-ventilated and oligotrophic during glacial periods, whilst being rather marked by reduced oxygenation associated to higher food input during the Holocene and Marine Isotope Stage 5a-c. We demonstrate that autochtonous deep-sea benthic foraminiferal communities neither respond to changes in the Murray River's discharges, nor do they follow variations in aeolian dust input from South Australia. Instead, the deep-sea and the terrestrial realm appear decoupled. Moreover, our observations suggest that bottom-water slope currents were stronger during the Holocene and Marine Isotope Stage 5a-c. We propose that this strengthening was triggered by an intensification of the poleward-circulating deep eastern boundary current transporting carbon-rich Indian Deep Water. In contrast, glacial seafloor conditions, especially during the Last Glacial Maximum, may reflect a greater influence and a shoaling of oxygen-rich Antarctic Bottom Water of South Australia. This bottom-water shift would follow the northward displacement of the Subtropical and Subantarctic Fronts and coincide with a withering influence of the Leeuwin Current within surface waters.

Environmental Signatures Preserved in Extremely Shallow-Water Benthic Foraminiferal Assemblages From Oman, Arabian Sea

Abstract The composition and preservation state of testate foraminiferal assemblages is of highest importance for paleoenvironmental and paleoclimatic reconstructions. Nearshore coastal areas, however, are often subject to harsh conditions, being shaped by continuous wave action and exposed to turbulence, erosion, and dynamic processes of sediment reworking. Situated at the interface between land and water, the environmental signatures preserved in assemblages of benthic foraminifera from coastal environments are therefore prone to taphonomic alterations, which potentially bias the fossil record and compromise accurate reconstructions. In this study, we have analysed the composition and preservation of benthic foraminifera from a suite of extremely shallow-water habitats along the Dhofar coastline (Oman) to document the structure of assemblages and illustrate their species richness. Our analyses show that extremely shallow foraminiferal assemblages from the southern coast of Oman retain the environmental signatures of their habitats despite intense environmental processes, making them useful for paleoenvironmental studies. Features of these signatures are recorded in the structural composition, species richness, dominance, and diversity indices of foraminiferal communities, in addition to numerical abundances of shell preservation groups.

Benthic foraminifera as bio-indicator of marine pollution in the southwestern Bay of Bengal, India.

The benthic foraminiferal community is an excellent bio-indicator of pollution in coastal and marginal marine settings. Their abundance, diversity and its relationship with environmental parameters, viz. grain size, organic carbon (Corg) and trace metals concentration, from the surface sediment layer of the southwestern shelf of the Bay of Bengal, have been used to understand the marine pollution in this study. A total of 32 surface sediment samples were collected at various water depths.The samples were analysed for grain size distribution, organic matter (OM), foraminiferal and trace metals studies. Statistical analyses such as correlation matrix, PCA (Principal Component Analysis) and cluster analysis show that the foraminiferal species composition is significantly influenced by the organic carbon (Corg), Co, Pb, Zn, Cr, and Ni concentrations. The dominance of stress-tolerant species, viz. Ammonia beccarii, Ammonia tepida, Nonion faba, Bulimina marginata, Bolivina robusta, Elphidium craticulatum and Elphidium advenum, as well as less species diversity, demonstrates the elevated Corg and trace metal pollution in the marine environment.

Short-term response of benthic foraminifera to fine-sediment depositional events simulated in microcosm

Abstract. A microcosm experiment was designed to describe how benthic foraminifera react to fine-sediment deposits varying in frequency and intensity as they may occur regularly or occasionally in coastal benthic environments, caused by discharges from (e.g.) river flooding, tidewater glacier melting in polar regions, or diverse anthropic activities linked to harbour or watershed management. The influence of seabed burial resulting from these events on the ecology of benthic ecosystems is often overlooked, and the resilience of benthic communities is poorly known. During a 51 d long experiment, a typical northeastern Atlantic intertidal foraminiferal community, mainly represented by Ammonia confertitesta and Haynesina germanica species, was subjected to two kinds of sedimentary disturbance: (1) a one-time high-volume (OHV) deposit, i.e. sediment about 3 cm thick was added at one time at the beginning of the experiment; and (2) frequent low-volume (FLV) deposits, i.e. sediment about 0.5 cm thick was added each week for 4 weeks. The geochemical environment (e.g. dissolved oxygen penetration in the sediment, salinity, temperature, and nutrient content in the supernatant water) was monitored to follow the microcosm steady state before and during the experiment. In both disturbed microcosms, H. germanica showed a significant linear decrease in abundance during the experiment, while the total abundance of foraminifera was significantly affected only by the OHV treatment, suggesting a stronger effect of a single thick deposit on standing stocks and biodiversity compared to frequent low-volume sediment supplies. Concerning the vertical migration of foraminifera after sedimentary disturbances, the two dominant species moved upwards to the water–sediment interface with migration speeds estimated to be 0.41 and 0.47 mm h−1 respectively for A. confertitesta and H. germanica. In the FLV treatment, the resilient state was already reached within 1 d following a low-thickness burial, while in the OHV, it was achieved between 1 and 7 d after the 3 cm thick deposit. These results suggest that foraminifera can migrate rapidly after a sedimentary burial to recover their preferential life position under the new sediment–water interface, but in the case of an abrupt thick burial, several days are needed to reach a resilient state.

Hidden aliens: Application of digital PCR to track an exotic foraminifer across the Skagerrak (North Sea) correlates well with traditional morphospecies analysis.

The problem of invasive species is a well-studied one, but knowledge of free-living unicellular eukaryotic invasive species is lacking. A potentially invasive foraminifer (Rhizaria), Nonionella sp. T1, was recently discovered in the Skagerrak and its fjords. Digital polymerase chain reaction (dPCR) was applied to track the spread of this non-indigenous species using a new dPCR assay (T1-1). The use of dPCR appears highly complementary to traditional hand picking of foraminiferal shells from the sediment, and is far less time-consuming. This study indicates that Nonionella sp. T1 has bypassed the outer Skagerrak strait, instead becoming established in Swedish west coast fjords, constituting up to half of the living foraminiferal community in fjord mouth areas. The ecology of Nonionella sp. T1 and its potential invasive impacts are still largely unknown, but it appears to be an opportunist using several energy sources such as nitrate respiration and kleptoplasty along with a possibly more efficient reproductive strategy to gain an advantage over the native foraminiferal species. Future ecological studies of Nonionella sp. T1 could be aided by dPCR and the novel Nonionella sp. T1-specific T1-1 assay.

The Middle-Upper Eocene benthic foraminifera from north-west Fayoum area, Egypt: Paleoecology and their similarity to the Tethyan provinces

This study deals with the Middle–Late Eocene benthic foraminiferal assemblage from the Um Rigl succession that is exposed in the northwest of Fayoum area, Egypt. Stratigraphically, two rock units are recognized from base to top as the Gehannam Formation and Birket Qarun Formation. The examination of benthic foraminiferal community identifies 63 species belonging to 36 genera, 22 families and four suborders. Their distribution aids to recognize one benthic foraminiferal biozone, Bulimina jacksonensis-Uvegerina jacksonensis Zone. To detect the paleocological conditions that prevailed during the deposition of the studied succession, a quantitative analysis is done on the foraminiferal assemblage, including the number of taxa, the relative abundances of the recorded suborders, calcareous species, agglutinated species and common species. The morphology of benthic foraminiferal tests is strongly associated with their microhabitat preferences. Therefore, the percentages of epifaunal and infaunal species are also calculated to detect the level of oxygenation. Accordingly, two ecozones are established, ecozone 1 represents the Gehannam Formation, whereas ecozone 2 represents the Birket Qarun Formation (excluding the barren zone in the upper part). Ecozone 1 is dominated by calcareous species (90–100%) and infaunal species (38–99%), while epifaunal species range from 2 to 62%. The most abundant taxa are Bolivina, Bulimina, Uvigerina, Nonion and Lenticulina. Therefore, the ecozone 1 was deposited under an inner-outer neritic environment, with normal salinity and eutrophic to mesotrophic conditions. On the other side, ecozone 2 is characterized by changes in the composition of foraminiferal assemblage, where infaunal species dominate the base of this ecozone, followed by a strong decline in the middle part and then increase again in the upper part. Also, a notable increase in epifaunal species is documented in this ecozone. This variation in foraminiferal assemblage reflects changes in water depth and oxygen content. Consequently, ecozone 2 was deposited under an inner to middle neritic environment, with normal salinity and mesotrophic to oligotrophic conditions. Regarding the paleobiogeographic outline, the results of multivariate analyses indicate that the Egyptian species show a strong similarity to those from the Southern Tethyan Province (Tunisia and Libya), whereas they show a reasonable similarity to the Western Tethyan Province (Spain, Italy, France). This deduction reflects a probable marine connection between both provinces during Eocene.