Global environmental policies have effectively designated 17 % of the Earth's surface as protected areas and implemented robust measures to address climate change. However, the importance of soils as critical reservoirs of biodiversity and carbon is often overlooked in global policy making. In the present study, we used nematodes as indicators to assess the impact of conservation strategies on soil food web connectance. We explored nematode metabolic footprints and their carbon budget, and evaluated soil health by identifying factors that influence nematode functional diversity. We collected 180 soil samples from three zones in the Souss Massa National Park in Morocco: transitional zone (organic cropping and grazing activities), buffer zone (grazing activity), core zone (strictly protected area), and a nearby intensively farmed non-protected area. We noted a consistent decline in diversity within all trophic groups from the core zone (56 taxa) to the non-protected zone (18 taxa). A notable increase in total nematode abundance and herbivore diversity was observed in the organic soils of the transitional zone. In contrast, nematode abundance and diversity were lower in non-protected zones. Meloidogyne, a sedentary endoparasite, was prevalent in conventional crops outside the park but was not reported within the park. Nitrogen, phosphorus, and potassium were the major soil parameters affecting nematode food webs. The functional metabolic footprints of nematodes were enhanced by nature conservation, highlighting the crucial role of nematodes in generating carbon influxes in protected areas. Our results show that 3.11× 1012 nematodes (with a total biomass of 330.47 tonnes) inhabit surface soils across the park, which is 14.38 times greater than the same area in the non-protected zone. Daily production and storage of biomass and carbon budget were 43.85 and 48.93 % higher in the park top soils than in the non-protected zone, respectively. This knowledge is significant for decision makers when formulating nature conservation programs, planning sustainable land use strategies, and addressing the challenges of rising CO2 emissions.