Many methods and tools are used to model and optimize various aspects of the water energy food nexus (WEFN). This work presents a novel software tool for the multi-objective optimization of the WEFN (MOO-WEFN). The model underlying the tool captures all three nexus sectors and the interlinkages between them. In addition, the model imposes constraints that mimic forces affecting the nexus, such as economics, environment, health, and nutrition. The software tool couples Excel with Python, which facilitates the tool's accessibility and ease of use due to its widespread usage and availability. A case study application demonstrates the tool's execution and provides examples of how changes can be made to the data to simulate different nexus developments. Five scenarios are applied to reflect such changes with results demonstrating the overall impact on resource production and consumption. Removing one of the less water-intensive food items results in a 20 % increase in water consumption. Limiting the availability of surface water results in a reallocation of water resources such that 80 % of water needs are satisfied from surface water and groundwater and 20 % from wastewater, compared to the baseline of 100 % surface water. Moreover, upon introduction of the conventional activated sludge treatment technology for wastewater (compared to the incumbent membrane bioreactor technology), energy consumption decreased by 10 %. These results show changes beyond the immediate sector of change and reflect the necessity for integrated modeling that captures the impact of one change on the nexus as a whole, in terms of resource consumption and allocation. Thus, the tool supports the capability of testing how new resources, technologies, and limitations will impact nexus interactions. Furthermore, the tool facilitates carrying out sensitivity and Pareto analyses for data generation and result evaluation.