Background. Functional near‐infrared spectroscopy (fNIRS) is being extensively explored as a potential primary screening tool for major depressive disorder (MDD) because of its portability, cost‐effectiveness, and low susceptibility to motion artifacts. However, the fNIRS‐based computer‐aided diagnosis (CAD) of MDD using deep learning methods has rarely been studied. In this study, we propose a novel deep learning framework based on a convolutional neural network (CNN) for the fNIRS‐based CAD of MDD with high accuracy. Materials and Methods. The fNIRS data of participants—48 patients with MDD and 68 healthy controls (HCs)—were obtained while they performed a Stroop task. The hemodynamic responses calculated from the preprocessed fNIRS data were used as inputs to the proposed CNN model with an ensemble CNN architecture, comprising three 1D depth‐wise convolutional layers specifically designed to reflect interhemispheric asymmetry in hemodynamic responses between patients with MDD and HCs, which is known to be a distinct characteristic in previous MDD studies. The performance of the proposed model was evaluated using a leave‐one‐subject‐out cross‐validation strategy and compared with those of conventional machine learning and CNN models. Results. The proposed model exhibited a high accuracy, sensitivity, and specificity of 84.48%, 83.33%, and 85.29%, respectively. The accuracies of conventional machine learning algorithms—shrinkage linear discriminator analysis, regularized support vector machine, EEGNet, and ShallowConvNet—were 73.28%, 74.14%, 62.93%, and 62.07%, respectively. Conclusions. In conclusion, the proposed deep learning model can differentiate between the patients with MDD and HCs more accurately than the conventional models, demonstrating its applicability in fNIRS‐based CAD systems.
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