Fluorescence Lifetime Correlation Spectroscopy Research Articles

Early Amyloidogenic Oligomerization Studied through Fluorescence Lifetime Correlation Spectroscopy

Amyloidogenic protein aggregation is a persistent biomedical problem. Despite active research in disease-related aggregation, the need for multidisciplinary approaches to the problem is evident. Recent advances in single-molecule fluorescence spectroscopy are valuable for examining heterogenic biomolecular systems. In this work, we have explored the initial stages of amyloidogenic aggregation by employing fluorescence lifetime correlation spectroscopy (FLCS), an advanced modification of conventional fluorescence correlation spectroscopy (FCS) that utilizes time-resolved information. FLCS provides size distributions and kinetics for the oligomer growth of the SH3 domain of α-spectrin, whose N47A mutant forms amyloid fibrils at pH 3.2 and 37 °C in the presence of salt. The combination of FCS with additional fluorescence lifetime information provides an exciting approach to focus on the initial aggregation stages, allowing a better understanding of the fibrillization process, by providing multidimensional information, valuable in combination with other conventional methodologies.

Filtered FCS: species auto- and cross-correlation functions highlight binding and dynamics in biomolecules.

An analysis method of lifetime, polarization and spectrally filtered fluorescence correlation spectroscopy, referred to as filtered FCS (fFCS), is introduced. It uses, but is not limited to, multiparameter fluorescence detection to differentiate between molecular species with respect to their fluorescence lifetime, polarization and spectral information. Like the recently introduced fluorescence lifetime correlation spectroscopy (FLCS) [Chem. Phys. Lett. 2002, 353, 439–445], fFCS is based on pulsed laser excitation. However, it uses the species-specific polarization and spectrally resolved fluorescence decays to generate filters. We determined the most efficient method to generate global filters taking into account the anisotropy information. Thus, fFCS is able to distinguish species, even if they have very close or the same fluorescence lifetime, given differences in other fluorescence parameters. fFCS can be applied as a tool to compute species-specific auto- (SACF) and cross- correlation (SCCF) functions from a mixture of different species for accurate and quantitative analysis of their concentration, diffusion and kinetic properties. The computed correlation curves are also free from artifacts caused by unspecific background signal. We tested this methodology by simulating the extreme case of ligand–receptor binding processes monitored only by differences in fluorescence anisotropy. Furthermore, we apply fFCS to an experimental single-molecule FRET study of an open-to-closed conformational transition of the protein Syntaxin-1. In conclusion, fFCS and the global analysis of the SACFs and SCCF is a key tool to investigate binding processes and conformational dynamics of biomolecules in a nanosecond-to-millisecond time range as well as to unravel the involved molecular states.

Time-Resolved Confocal Fluorescence Microscopy: A Generalized Approach Enables New Directions for FLIM, FRET and FCS

Fluorescence dynamics of single molecules can be followed on timescales from sub-nanoseconds to seconds and even beyond with a universal approach of time-resolved measurements. The underlying technique (Time-Tagged Time-Resolved (TTTR) Recording) allows one to simultaneously record timing and fluorescence intensity information, both spectrally and spatially, on a single photon basis. We apply photon sorting and weighting schemes determined from the nanosecond photon arrival times to extend and improve single-molecule fluorescence methodologies which up to now commonly utilize only intensity-based analysis, namely FCS and FRET.In Fluorescence Lifetime Correlation Spectroscopy (FLCS) photon weighting provides superior suppression of common parasitic contributions, e.g., Raman scattering and detector after-pulsing. Beyond this improvement of traditional FCS, FLCS also offers the possibility to accurately determine diffusion properties of different species only requiring that the species differ in their fluorescence lifetimes [1]. In 2-focus-FCS (2fFCS), the nanosecond timing information is used to identify the spatial origin of the photons by combining Pulsed Interleaved Excitation (PIE) with time-gated detection [2]. Thereby, 2fFCS dramatically improves the accuracy of measuring absolute diffusion coefficients. In addition to this, PIE can be used to identify artifacts and sub-populations in single-pair FRET measurements. Nanosecond time-resolved detection offers a complementary approach to donor/acceptor intensity based methods for calculating FRET efficiencies via quenching of the donor lifetime.[1] Benda A., Hof. M., Wahl M., Patting M., Erdmann R., Kapusta P., Rev. Sci. Instr., Vol.76, 033106 (2005)[2] Dertinger Th., Pacheco V., von der Hocht I., Hartmann R., Gregor I., Enderlein J, ChemPhysChem, Vol.8, p.433 (2007)

Poly-ethylene glycol induced super-diffusivity in lipid bilayer membranes

Fluorescence lifetime correlation spectroscopy (FLCS) has been used to probe the influence of PEG-8000 on the fluidity of fluorescently labeled planar supported lipid bilayers on ozone plasma treated glass. The lipid membrane compositions examined were; DOPC, DOPC/DOPS (80/20 mol/mol) and DMPC, with and without cholesterol. The lateral diffusion coefficients (D) for supported lipid bilayer films of these layers without cholesterol were 7.9 ± 0.2, 7.9 ± 0.4 and 5.5 ± 0.1 μm2 s−1 respectively. The high fluidity reflected the super-hydrophilicity (contact angle of 0) of the ozone treated plasma glass substrate. Using DOPE conjugated Atto 655 as a probe, exposure of the lipid bilayer to a 30% wt/wt aqueous solution of PEG, followed by washing, dramatically increased the diffusion coefficients of the probe within the film. For example, the diffusion coefficient for the DOPC bilayer increases by nearly an order of magnitude to 51.4 ± 2.6 μm2 s−1. The autocorrelation curves for DOPC/DOPS (80/20 mol/mol) and DMPC bilayers required a two-component model for adequate fit of their behaviour yielding both fast and slow components of the diffusion. In all cases, when hydrophilic DOPE–Atto 655 was used as the probe, treatment of the lipid bilayer with PEG resulted in non-Brownian diffusion. Importantly, the observed diffusion behavior observed depends on the identity of probe. In contrast, when a hydrophobic probe (DOPE–NapthBodipy) was employed PEG showed relatively little impact on the observed diffusion rates. This was attributed to orientation of the reporter probe in the lipid bilayer and its aqueous interface. Specifically, DOPE–Atto 655 is believed to associate strongly with PEG mesh at the aqueous interface of the lipid bilayer, its diffusion strongly influenced by the structure in this region, whereas DOPE–NapthBodipy remains in the interior of the bilayer where it is relatively uninfluenced by PEG.

Effects of the anion salt nature on the rate constants of the aqueous proton exchange reactions

The proton-transfer ground-state rate constants of the xanthenic dye 9-[1-(2-methyl-4-methoxyphenyl)]-6-hydroxy-3H-xanthen-3-one (TG-II), recovered by Fluorescence Lifetime Correlation Spectroscopy (FLCS), have proven to be useful to quantitatively reflect specific cation effects in aqueous solutions (J. M. Paredes, L. Crovetto, A. Orte, J. M. Alvarez-Pez and E. M. Talavera, Phys. Chem. Chem. Phys., 2011, 13, 1685-1694). Since these phenomena are more sensitive to anions than to cations, in this paper we have accounted for the influence of salts with the sodium cation in common, and the anion classified according to the empirical Hofmeister series, on the proton transfer rate constants of TG-II. We demonstrate that the presence of ions accelerates the rate of the ground-state proton-exchange reaction in the same order than ions that affect ion solvation in water. The combination of FLCS with a fluorophore undergoing proton transfer reactions in the ground state, along with the desirable feature of a pseudo-dark state when the dye is protonated, allows one unique direct determination of kinetic rate constants of the proton exchange chemical reaction.

Photophysics of the Interaction between a Fluorescein Derivative and Ficoll

Ficoll has been widely used as a crowding agent to mimic intracellular media because it is believed to be noninteracting and is composed of mixed sizes such that smaller and larger diffusing solutes can be studied. Due to the interest that the fluorescent dye 9-[1-(2-methyl-4-methoxyphenyl)]-6-hydroxy-3H-xanthen-3-one (TG-II) as a fluorometric probe of phosphate ions in intracellular media could generate, we describe the spectral characteristics of the system TG-II-Ficoll in aqueous solution by means of absorption spectroscopy, steady-state fluorescence, time-resolved fluorescence, time-resolved emission spectroscopy, and fluorescence lifetime correlation spectroscopy. The spectral characteristics found are consistent with the formation of an adsorption complex on the surface of Ficoll, probably due to hydrogen bonding between TG-II and Ficoll. In addition, the diffusion coefficient calculated for the association was similar to the diffusion coefficient previously recovered for Ficoll in the same experimental conditions. Therefore, our overall data clearly demonstrate that Ficoll is not an inert crowding agent when in the presence of fluorescein derivative dyes.

Dynamics of Water-in-Oil Nanoemulsions Revealed by Fluorescence Lifetime Correlation Spectroscopy

The size, diffusional properties, and dynamics of reverse water-in-oil nanoemulsions, or reverse micelles (RMs), have been widely investigated because of interest in this system as a model for biological compartmentalization. Here, we have employed fluorescence lifetime correlation spectroscopy (FLCS) to reveal the dynamics and sizes of aerosol-OT (AOT)/isooctane RMs using a fluorescent xanthene derivative called Tokyo Green II (TG-II). The dye undergoes a partition and a shift in its tautomeric equilibrium such that the TG-II anion remains in the inner micellar aqueous core, and the neutral quinoid form lies in the interfacial region. By applying FLCS, we specifically obtained the lifetime filtered autocorrelation curves of the anionic TG-II, which shows a characteristic lifetime of approximately 4 ns. Analysis of the FLCS curves provides the diffusion coefficient and hydrodynamic radius of the RMs as well as micelle dynamics in the same experiment. The FLCS curves show dynamics in the microsecond time range, which represents an interconversion rate that changes the distribution of the TG-II neutral and anionic forms in the hydrophobic interface and the water core.

Label-Free Optical Characterization Methods for Detecting Amine Silanization-Driven Gold Nanoparticle Self-Assembly

Fluorescence lifetime correlation spectroscopy (FLCS) is presented as a single-step label-free detection method for probing the amine silanization-driven spontaneous 3D self-assembly of freestanding gold nanoparticles (GNPs) in solution. Unlike the conventional methods of studying self-assembly, for example, UV-vis spectroscopy and electron microscopy, FLCS utilizes the intrinsic gold fluorescence. The significance of this approach is to amalgamate the measurement of optical and hydrodynamic size properties simultaneously to achieve a more coherent description of the self-assembly pathway. GNP self-assembly has two-stage kinetics. Electrostatic interaction drives the initial amine silanization, and this is followed by siloxane bond formation between hydrolyzed ethoxy groups of GNP-attached APTES, resulting in the formation of micrometer-sized superstructures. The self-assembly has resulted in a 5-fold increase in the fluorescence lifetime (FL), and the FLCS study has shown an 8- to 10-fold increase in the diffusion coefficient using the pure diffusion model. This result is consistent with the transmission electron microscopy (TEM) observation, which shows a few hundred fold increase in the diameter due to assembly formation by the GNPs.

Dual‐color fluorescence lifetime correlation spectroscopy to quantify protein–protein interactions in live cell

Dual-color fluorescence correlation spectroscopy is an interesting method to quantify protein interaction in living cells. But, when performing these experiments, one must compensate for a known spectral bleed through artifact that corrupts cross-correlation data. In this article, problems with crosstalk were overcome with an approach based on fluorescence lifetime correlation spectroscopy (FLCS). We show that FLCS applied to dual-color EGFP and mCherry cross-correlation allows the determination of protein-protein interactions in living cells without the need of spectral bleed through calibration. The methodology was validated by using EGFP-mCherry tandem in comparison with coexpressed EGFP and mCherry in live cell. The dual-color FLCS experimental procedure where the different laser intensities do not have to be controlled during experiment is really very helpful to study quantitatively protein interactions in live sample.

Fluorescence correlation spectroscopy: a review of biochemical and microfluidic applications.

Over the years fluorescence correlation spectroscopy (FCS) has proven to be a useful technique that has been utilized in several fields of study. Although FCS initially suffered from poor signal-to-noise ratios, the incorporation of confocal microscopy has overcome this drawback and transformed FCS into a sensitive technique with high figures of merit. In addition, tandem methods have evolved to include dual-color cross-correlation, total internal reflection fluorescence correlation, and fluorescence lifetime correlation spectroscopy combined with time-correlated single-photon counting. In this review, we discuss several applications of FSC for biochemical, microfluidic, and cellular investigations.

Fluorescence Correlation Lifetime Spectroscopy Study of Xanthene Derivatives in Water-In-Oil Micelles

Fluorescence Lifetime Correlation Spectroscopy (FLCS) allows to extract autocorrelation functions from different emitters by using Time-Correlated Single Photon Counting information, extending the applicability of conventional Fluorescence Correlation Spectroscopy (FCS) [1]. Here, we have used a xanthene derivative, so-called Tokyo Green II (TG-II) [2,3], to study the size, diffusional properties, and dynamics of reverse water-in-oil micelles of Aerosol-OT (AOT) in isooctane (iC8). The dye undergoes a partition between the inner micellar aqueous core, in which the TG-II anion is the main form, and the AOT lipophilic side chains, where the TG-II neutral species is predominant. By applying FLCS we obtained the lifetime filtered autocorrelation (AC) curves of the anionic TG-II, which shows a characteristic lifetime of 3.70 ns, under different conditions. Fitting the TG-II anion AC curves to the appropriate model provided the diffusion coefficient and hydrodynamic radius of micelles at different ratios [water] / [AOT]. Interestingly, the AC functions also showed a strong anticorrelation time in the microsecond time range. This time represents micelle dynamics that changes the distribution of the TG-II neutral and anionic forms in the hydrophobic interface and the water core. [1] Kapusta et al., J. Fluoresc.17 (2007), 43. [2] Paredes et al., Phys. Chem. Chem. Phys.11 (2009), 5400. [3] Paredes et al., Phys. Chem. Chem. Phys.12 (2010), 323.

Influence of the solvent on the ground- and excited-state buffer-mediated proton-transfer reactions of a xanthenic dye

The buffer-mediated proton-transfer reactions of the fluorescent xanthenic derivative 9-[1-(2-Methyl-4-methoxyphenyl)]-6-hydroxy-3H-xanthen-3-one (TG-II) have been studied in different aqueous media. We have employed various buffers to investigate the influence of donor/acceptor systems with different anion and/or cation chemical constituents on the kinetic parameters of proton-transfer. The kinetic parameters were recovered both in the ground-state by means of Fluorescence Lifetime Correlation Spectroscopy (FLCS) and in the excited-state by means of Time Correlated Single Photon Counting (TCSPC) and Global Compartmental Analysis (GCA). Both ground- and excited- deprotonation and protonation recovered rate constants in the presence of either phosphate or acetate buffer as donor/acceptor systems were similar. The presence of Tris-HCl buffer does not promote the excited-state proton-transfer (ESPT) reaction. The results indicate the influence of the ions on the ground-state proton-transfer (GSPT) rates and concomitantly on the ESPT reaction. The proton-transfer rate constants recovered here show a trend correlated with the Hofmeister series or the Marcus classification of ions.

Fluorescence correlation spectroscopy in vivo

AbstractThis review will focus on the application and potential of FCS and FCCS in vivo. Practical issues and sources of artifacts when performing measurements in living cells are discussed. Finally, several extensions to conventional FCS, such as multiphoton excitation, scanning FCS, Fluorescence Lifetime Correlation Spectroscopy, multiplexing FCS and recent approaches to reach smaller excitation volumes are reviewed

Fluorescence Lifetime Cross Correlation Spectroscopy Resolves EGFR and Antagonist Interaction in Live Cells

Fluorescence correlation or cross-correlation spectroscopy (FCS or FCCS), a single molecule technique, has the ability to provide highly sensitive information on interaction and dynamics of biomolecules both in vitro and in vivo. However, the inherent drawback of FCS is that species with similar molecular weight could not be differentiated. Although FCCS could resolve this through cross-correlation, it suffers from nonideal confocal volume overlap and spectral cross-talk which limits its application. In this work, we demonstrate for the first time the applicability of fluorescence lifetime correlation spectroscopy (FLCS) to monitor the interaction of an antagonist antibody with the epidermal growth factor receptor (EGFR) in live cells. As a proof of concept, we demonstrate the interaction of Cy5 labeled IgG and Alexa633 labeled anti-IgG using a single laser source (636 nm excitation) in vitro. The autocorrelation functions were separated based on their respective lifetime with a single detector and their K(d) value was determined to be 11 +/- 3 nM. An in vivo application constituting the interaction of EGFR neutralizing antibody labeled with Alexa488 and EGFR-GFP in live HEK293 cells was successfully demonstrated. The binding specificity of EGFR neutralizing antibody was confirmed by fluorescence lifetime cross-correlation measurements and fluorescence lifetime imaging (FLIM). The dissociation constant of this complex was found to be 9.2 +/- 2.7 nM. A quantitative assessment of receptor density calculations show that the density of EGFR significantly decreased, from 540 +/- 64 receptors/microm(2) to 38 +/- 7 receptors/microm(2) upon addition of the neutralizing EGFR antibody, indicating that the antagonist could induce receptor internalization. The demonstrated work not only opens up new opportunities in studying protein-protein interactions in solutions and in live cells but also provide new insights in biology to understand how the antagonists influence EGFR through live cell quantification and imaging.

On the Resolution Capabilities and Limits of Fluorescence Lifetime Correlation Spectroscopy (FLCS) Measurements

Quantitative tests were performed in order to explore the practical limits of FLCS. We demonstrate that: a) FLCS yields precise and correct concentration values from as low as picomolar to micromolar concentrations; b) it is possible to separate four signal components in a single detector setup; c) diffusion times differing only 25% from each other can be resolved by separating a two component mixture based on the different fluorescence lifetimes of both components; d) most of the inherent technical limitations of conventional FCS are easily overcome by FLCS employing a single detector channel confocal detection scheme.

Fluorophore Conjugated Silver Nanoparticles: A Time-resolved Fluorescence Correlation Spectroscopic Study.

Fluorescence detection is a central component in biological research. In recent years there has been a growing interest in the interactions of fluorophores with metallic surfaces or particles. A single-stranded oligonucleotide was chemically bound to a single 50 nm diameter silver particle and a Cy5-labeled complementary single-stranded oligonucleotide was hybridized with the particle-bound oligonucleotide. The bound Cy5 molecules on the silver particles were spatially separated from the silver surface by the hybridized DNA duplex chains, which were about 8 nm in length, to reduce the competitive quenching. We use fluorescence lifetime correlation spectroscopy (FLCS) with picosecond time-resolved detection to separate the fluorescence correlation spectroscopy (FCS) contributions from fluorophores and metal-conjugated fluorophores. The single Cy5-labeled 50 nm silver particles displayed a factor of 15-fold increase in emission signal and 5-fold decrease in emission lifetimes in solution relative to the Cy5-DNA in the absence of metal. Lifetime measurements support the near-field interaction mechanism between the fluorophore and silver nanoparticle. In this study, FLCS is being applied to a system where the brightness and the fluorescent lifetime of the emitting species are significantly different. Our measurements suggest that FLCS is a powerful method for investigating the metal-fluorophore interaction at the single molecule level and to separate two different species from a mixture solution emitting at the same wavelength. Additionally, the highly bright Cy5-DNA-Ag molecules offer to be excellent probes in high background biological samples.

Fluorescence Lifetime Correlation Spectroscopy Reveals Compaction Mechanism of 10 and 49 kbp DNA and Differences between Polycation and Cationic Surfactant

Within the past decade single molecule techniques contributed significantly to the understanding of the mechanism of DNA condensation induced by various kinds of condensers. While observation of single DNA molecules bigger than 100 kbp (kilobasepairs) can be achieved by fluorescence microscopy, smaller DNA molecules can be visualized directly only via methods allowing higher resolution like atomic force microscopy (AFM), with the drawback that the observed particles interfere with the surface. Here, we introduce a robust utilization of a novel technique based on the detection of single molecules, fluorescence lifetime correlation spectroscopy (FLCS). The method simultaneously determinates diffusion coefficients and fluorescence lifetime. We demonstrate that FLCS can distinguish between different compaction mechanisms of DNA molecules being even smaller than the resolution of a fluorescence microscope. The success of this unique technique is based on the fact that FLCS allows for characterizing the diffusion properties of the condensed forms exclusively in presence of uncondensed DNA molecules. We focus on the condensation mechanism of circular 10 and linear 49 kbp DNA induced by spermine and cetyltrimethylammonium bromide (CTAB). We show that spermine induces an all-or-none transition, while the condensation with CTAB is gradual. The conclusions drawn are furthermore supported by two standard techniques, dynamic light scattering (DLS), and fluorescence correlation spectroscopy (FCS).

Fluorescence lifetime correlation spectroscopic study of fluorophore-labeled silver nanoparticles.

In this paper, we introduce the use of fluorescence lifetime correlation spectroscopy to study the metal-fluorophore interactions in solution at the single-fluorophore level. A single-stranded oligonucleotide was chemically bound to a 50-nm-diameter single silver particle, and a Cy5-labeled complementary single-stranded oligonucleotide was hybridized with the silver particle-bound oligonucleotide. The distance between the fluorophore and silver particle was maintained by a rigid hybridized DNA duplex of 8 nm in length. The single Cy5-DNA-Ag particles showed more than 10-fold increase in fluorescence intensity and a 5-fold decrease in emission lifetimes as compared with Cy5-DNA free molecules in the absence of metal. The decrease of lifetime for the Cy5-DNA-Ag particle allowed us to resolve the correlation functions of the two species based on the intensity decays. The increased brightness of the Cy5-DNA-Ag particle as compared to free Cy5-DNA resulted in an increased contribution of Cy5-DNA-Ag to the correlation function of the mixture. These results show that the effects of metal particles on fluorophores can be used to detect the small fractional populations of the metal-bound species in the presence of a larger number of less bright species. Our results also suggest that these bright fluorophores conjugated to silver particles could be used as the fluorescent probes for clinical detection in the biological samples with the high background.

On Mechanism of Intermediate-Sized Circular DNA Compaction Mediated by Spermine: Contribution of Fluorescence Lifetime Correlation Spectroscopy

The compaction of DNA plays a role in the nuclei of several types of cells and becomes important in the non-viral gene therapy. Thus, it is in the scope of research interest. It was shown, that spermine-induced compaction of large DNA molecules occurs in a discrete "all-or-non" regime, where the coexistence of free and folded DNA molecules was observed. In the case of intermediate-sized DNA molecules (approximately 10 kbp), so far, it was stated that the mechanism of folding is continuous. Here, we show, that neither a standard benchmark technique-dynamic light scattering, nor a single molecule technique such as fluorescence correlation spectroscopy, can decide what kind of mechanism is undertaken in the compaction process. Besides, we introduce an application of a new approach-fluorescence lifetime correlation spectroscopy. The method takes an advantage of a subtle lifetime change of an intercalating dye PicoGreen during the titration with spermine and based on that, it reveals the discrete mechanism of the process. Furthermore, we show that it allows for observation of the equilibrium state transition dynamics.

Equilibrium Dynamics of Spermine-Induced Plasmid DNA Condensation Revealed by Fluorescence Lifetime Correlation Spectroscopy

The spermine-induced DNA condensation is a first-order phase transition. Here, we apply a novel technique fluorescence lifetime correlation spectroscopy to analyze this transition in a greater detail. We show that the method allows for the observation of the condensed and uncondensed molecules simultaneously based solely on different fluorescence lifetimes of the intercalating fluorophore PicoGreen in the folded und unfolded domains of DNA. The auto- and cross-correlation functions reveal that a small fraction of the DNA molecules is involved in the dynamic intramolecular equilibrium. Careful inspection of the cross-correlation curves suggests that folding occurs gradually within milliseconds.