Sun-Induced chlorophyll Fluorescence (SIF) is the most promising remote sensing signal to monitor photosynthesis in space and time. However, under stress conditions its interpretation is often complicated by factors such as light absorption and plant morphological and physiological adaptations. To ultimately derive the quantum yield of fluorescence (ΦF) at the photosystem from canopy measurements, the so-called escape probability (fesc) needs to be accounted for.In this study, we aim to compare ΦF measured at leaf- and canopy-scale to evaluate the influence of stress responses on the two signals based on a potato mesocosm heat-drought experiment. First, we compared the performance of recently proposed reflectance-based approaches to estimate leaf and canopy red fesc using data-supported simulations of the radiative transfer model SCOPE. While the leaf red fesc showed a strong correlation (r2 ≥ 0.76), the canopy red fesc exhibited no relationship with the SCOPE retrieved red fesc in our experiment. We therefore propose modifications to the canopy model to address this limitation.We then used the modified models of red fesc, along with an existing model for far-red fesc to analyse the dynamics of leaf and canopy red and far-red fluorescence under increasing drought and heat stress conditions. By incorporating fesc, we obtained a closer agreement between leaf and canopy measurements. Specifically, for red fesc, the r2 of the two variables increased from 0.3 to 0.50, and for far-red fesc, from 0.36 to 0.48.When comparing the dynamics of the quantum yield of red and far-red fluorescence (ΦF,687 and ΦF,760) under increasing stress, we observed a statistically significant decrease of both leaf and canopy ΦF,687 as well as leaf ΦF,760, as drought and heat conditions intensified. Canopy ΦF,760, on the contrary, did not exhibit the same trend, since measurements under low stress conditions showed a wider spread and lower median than under high stress conditions. Finally, we analysed the sensitivity of ΦF,687 and ΦF,760 to changing solar incidence angle, by comparing the variability of the measurements without and with mesocosm rotation. Our results suggest that the variation in ΦF,760 strongly increased with changing solar incidence angle. These findings highlight the need for further research to understand the causes of discrepancies between leaf and canopy scale ΦF,760. On the contrary, the underutilised and understudied ΦF,687 showed great potential in assessing plant responses to drought and heat stress.
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