Fluctuations In Abundance Research Articles

Soil mite communities (Acari, Mesostigmata) in pure stands on post-agricultural lands: does season matter?

Post-agricultural land differs from typical forest land in physical, chemical and biological features. In addition, the environment of this land type is determined, among other things, by the introduced tree species. These differences may be revealed by the biodiversity and abundance of the soil fauna. We analysed the abundance, species richness and diversity of different instars of mesostigmatid mites inhabiting three different habitat types on post-agricultural land (shaped by pure Pinus sylvestris L., Tilia cordata Mill. and Betula pendula Roth stands). We collected 288 soil samples from eight plots in three stands. The collection was conducted in July and October in two consecutive vegetation seasons (2021 and 2022) for Mesostigmata mites community. Soil characteristics (determination of soil group and analysis of physical and chemical properties of soil and litter) were done in July 2021. In total, 399 individuals (266 females, 50 males and 83 juveniles) were classified into 38 taxa (33 species, five genera). Most individuals belonged to the Parasitidae, Laelapidae and Veigaiidae families. The most abundant species were Hypoaspis aculeifer (Canestini) (21.6% of all recorded mites), Veigaia nemorensis (C.L.Koch) (7.8%) and Trachytes aegrota (C.L.Koch) (7.0%). Abundance, species richness and diversity were shaped by collection month and Fe content in soil. The abundance was influenced by N litter content and was significantly lower in P. sylvestris stand in July (0.57 ± 0.23; mean ± SE) than in P. sylvestris (2.17 ± 0.54) and T. cordata (2.15 ± 0.48) stands in October. Moreover, abundance in P. sylvestris stand in October was higher than in B. pendula stand in July (0.78 ± 0.26). Similarly, species richness was significantly lower in P. sylvestris stand in July than in P. sylvestris and T. cordata stands in October (2.17 ± 0.54 and 2.15 ± 0.48, respectively). Higher Shannon’s diversity of mite communities was reported in P. sylvestris stand in October (0.40 ± 0.10) than in P. sylvestris and B. pendula stands in July (0.12 ± 0.06 and 0.14 ± 0.08, respectively). Large fluctuations of abundance, species richness and diversity of soil mite communities in P. sylvestris and B. pendula stands between collection months give the insights for creating mixed stands on post-agricultural land. It is worth noticing that the wet season creates the most favourable living environment for mesostigmatid mites in P. sylvestris litter.

Engaging citizens to monitor pollinators through a nationwide BioBlitz: Lessons learned and challenges remaining after four years

Pollination is a key mutualistic interaction between animals and flowering plants, generating biodiversity and providing valuable ecosystem services. However, a pollination crisis occurs because anthropogenic disturbance affects pollinators and their habitats, risking biodiversity and food security. Also, the lack of evidence-based knowledge may worsen disturbance effects by delaying decision-making and conservation actions. Citizen science plays an important role in data gathering by engaging volunteers in obtaining such information. Here, we present the results of four years of pollinator occurrence data from a series of targeted BioBlitz events conducted each November from 2020 to 2023 in Chile. We obtained a total of 6327 records (identified to the species or genus level), corresponding to 569 species from 44 families, collected along the Chilean territory, a 10-fold increase compared to the pre-BioBlitz period (2016–2019). The most frequent species were the butterfly Vanessa carye, the invasive bees Bombus terrestris and Apis mellifera, and the native bumblebee Bombus dahlbomii. Despite inter-annual abundance fluctuations, species composition was similar over time. The most recorded families were Apidae, Syrphidade, Nymphalidae, and Buprestidae. This nationwide multi-year citizen science survey allowed us to collect an impressive dataset that would have been unattainable by scientists alone. Furthermore, we obtained valuable information for monitoring threatened (e.g., B. dahlbomii) or invasive species (e.g., B. terrestris) over space and time, aiding decision-making and conservation efforts. Engaging people in pollinator monitoring strengthens human-nature connections and fosters conservation attitudes.

Asynchronous abundance fluctuations can drive giant genotype frequency fluctuations.

Large stochastic population abundance fluctuations are ubiquitous across the tree of life, impacting the predictability and outcomes of population dynamics. It is generally thought that abundance fluctuations with a Taylor's law exponent of two do not strongly impact evolution. However, we argue that such abundance fluctuations can lead to substantial genotype frequency fluctuations if different genotypes in a population experience these fluctuations asynchronously. By serially diluting mixtures of two closely related Escherichia coli strains, we show that such asynchrony can occur, leading to giant frequency fluctuations that far exceed expectations from genetic drift. We develop an effective model explaining that the abundance fluctuations arise from correlated offspring numbers between individuals, and the large frequency fluctuations result from (even slight) decoupling in offspring number correlations between genotypes. The model quantitatively predicts the observed abundance and frequency fluctuation scaling. Initially close trajectories diverge exponentially, suggesting that chaotic dynamics may underpin the excess frequency fluctuations. Our findings suggest that decoupling noise is also present in mixed-genotype Saccharomyces cerevisiae populations. Theoretical analyses demonstrate that decoupling noise can strongly influence evolutionary outcomes, in a manner distinct from genetic drift. Given the generic nature of these frequency fluctuations, we expect them to be widespread across biological populations.

Population structure and feeding habits of Carcinoscorpius rotundicauda in the bay environment, Southern Gulf of Thailand

This study presents the first comprehensive assessment of the population structure and feeding habits of Carcinoscorpius rotundicauda in Thailand. Sample collection was conducted using crab gill nets at seven sampling sites characterized by distinct ecosystem attributes in Pattani Bay between February 2019 and March 2020. Our findings indicate the presence of a single Asian horseshoe crab (HSC) species within the bay, with a sex ratio of approximately 1:1 (48.1 % males, 51.9 % females) that did not deviate significantly from parity. Habitat variation within the bay did not influence HSC abundance (P > 0.05) whereas monthly abundance fluctuations were highly significant (P < 0.001), peaking in March and reaching the lowest in September. Positive correlations were observed between HSC abundance and environmental factors including dissolved oxygen, temperature, water pH, water depth, and chlorophyll c concentrations. Linear regression analysis revealed a positive correlation between morphometric characteristics and body weight. However, multiple linear regression analysis indicated a negative relationship between body weight and telson length (TEL) and opisthosoma width (OW) of males, as well as TEL of females. The size at which 50 % of the HSC population reached maturity (L50) was estimated to be 12.2 cm for males and 13.5 cm for females based on prosomal width (PW). The average PW measurements of HSC at different egg stages (1–4) from developing to mature females was 14.4 cm, with corresponding body weights ranging from 224 to 243 g. Females at egg of stages 3 and 4 were found throughout the year, indicating multiple spawning events, particularly prevalent in January-April, and predominantly abundant at stations 1, 2, 5 and 6. HSC primarily consumed bivalves (22.1±21.2 %), followed by fishes (5.9±13.0 %) and crustaceans (2.9±9.0 %) by volumetric contribution (%V). This comprehensive study provides novel insights into the population dynamics and feeding ecology of HSC within Thailand. The findings establish a foundational framework for future research endeavors and offer critical data to inform the management and conservation of their habitats.

Unraveling the Role of Contaminants Reshaping the Microflora in Zea mays Seeds from Heavy Metal–Contaminated and Pristine Environment

Heavy metal (HM) contaminants are the emerging driving force for reshaping the microflora of plants by eradicating the non-tolerance and non-resistant microbes via their lethal effects. Seeds served as a prime source of ancestral microbial diversity hereditary transfer from generation to generation. However, the problem arises when they got exposed to metal contamination, does metal pollutant disrupt the delicate balance of microbial communities within seeds and lead to shifts in their microflora across generations. In this study, the endophytic community within Zea mays seeds was compared across three distinct regions in Yunnan province, China: a HM-contaminated site Ayika (AK), less-contaminated site Sanduoduo (SD), and a non-contaminated Site Dali (DL). High-throughput sequencing techniques were employed to analyze the microbial communities. A total of 492,177 high-quality reads for bacterial communities and 1,001,229 optimized sequences for fungal communities were obtained. These sequences were assigned to 502 and 239 operational taxonomic units (OTUs) for bacteria and fungi, respectively. A higher diversity was recorded in AK samples than in SD and DL. Microbial community structure analysis showed higher diversity and significant fluctuation in specific taxa abundance in the metal-polluted samples exhibiting higher response of microbial flora to HM. In AK samples, bacterial genera such as Gordonia and Burkholderia-Caballeronia-Paraburkholderia were dominant, while in SD Pseudomonas and Streptomyces were dominant. Among the fungal taxa, Fusarium, Saccharomycopsis, and Lecanicillium were prevalent in HM-contaminated sites. Our finding revealed the influential effect of HM contaminants on reshaping the seed microbiome of the Zea mays, showing both the resilience of certain important microbial taxa as well the shifts in the diversity in the contaminated and pristine conditions. The knowledge will benefit to develop effective soil remediation, reclamation, and crop management techniques, and eventually assisting in the extenuation of metal pollution's adverse effects on plant health and agricultural productivity.

The role of indirect interspecific effects in the stochastic dynamics of a simple trophic system.

Indirect interspecific effects (IIEs) occur when one species affects another through a third intermediary species. Understanding the role of IIEs in population dynamics is key for predicting community-level impacts of environmental change. Yet, empirically teasing apart IIEs from other interactions and population drivers has proven challenging and data-demanding, particularly in species-rich communities. We used stochastic population models parameterized with long-term time series of individual data to simulate population trajectories and examine IIEs in a simple high-arctic vertebrate food chain consisting of the wild Svalbard reindeer, its scavenger (the Arctic fox) and the barnacle goose, a migratory prey of the fox. We used the simulated population trajectories to explore co-fluctuations between the species within the food chain. Additionally, we adjusted the model in two ways: first, to isolate the impact of fluctuations in the abundance of a species by keeping its abundance constant; and second, to isolate the impact of a trophic interaction on the dynamics of other species by setting the abundance of the influencing species to zero. We found that fluctuations in reindeer carcasses shaped fox abundance fluctuations, which subsequently affected goose population dynamics. Reindeer and goose population growth rates were nevertheless only weakly correlated, probably in part due to demographic and environmental stochasticity, density dependence and lagged dynamics in the geese. However, removing the fluctuations in reindeer abundance or setting reindeer abundance to zero indeed demonstrated strong underlying IIEs on goose population dynamics and extinction probability. This study thus highlights the importance of species interactions, including IIEs, on species coexistence and communities in the long-term, that is beyond immediate effects and covariation in short-term fluctuations.

Distribution of Najadaceae Species in Trans-Baikal Area Due to Climatic Factors

According to data of the late 20th century in the Trans-Baikal and Baikal areas, the family Najadaceae is represented by four species known in few localities: Caulinia flexilis (4 localities), C. minor (3), and Najas major (3), N. marina (4). All of them are annuals, r-strategists, which are characterized by fluctuations in abundance. Since the 21st century, these species have been found in 20 more localities, mainly situated within the Baikal Depression. In 2015, when performing monitoring studies of aquatic flora, three more new localities of Caulinia flexilis, C. minor, and Najas major were found in the basin of the Amur River. Distribution maps of the Najadaceae species in the region were compiled, and the ecological characteristics of their habitats were given. In Trans-Baikal area, since the middle of the 20th century, warming has occurred due to an increase in the average annual temperature. For the last 70 years, aridization has increased in southern regions, which changes the habitat conditions in waterbodies. Findings of these Najadaceae species in Trans-Baikal area coincided with the periods of increase in mean annual air temperatures and with local minimums of precipitation. An increase in the number of findings of the Najadaceae species since the beginning of the 21st century, both in Trans-Baikal area and in other regions of Russia, has been occurring against the background of an increase in the average annual air temperature. In Trans-Baikal area, the trend of increasing of temperatures in the warm season since the beginning of the 21st century is favorable for these species and may contribute to their further distribution.

Abundance, habitat distribution and content of reserve energy substances in shrews (Sorex caecutiens, Sorex isodon) within the Seymchan-Buyundinskaya Depression (Upper Kolyma River region)

This research examined the influence of interspecific interactions among shrew species on their territorial distribution and trophic conditions within larch and poplar-chosenia forests along the upper Kolyma River. The study specifically analyzed the biotopic characteristics associated with the relative abundance and energy reserve content, including fat tissue mass and glycogen levels in the liver, of Sorex caecutiens and S. isodon. Fieldwork was conducted in the Seymchan- Buyunda depression during July and August in 2003 and 2010. A total of 1,588 individuals from both species were captured using pitfall traps. The assessment of energy reserve content in S. caecutiens (n = 736) and S. isodon (n = 113) was carried out between 2006 and 2010. The abundance of S. caecutiens in the examined habitats exhibited consistent trends and a strong correlation (RS = 0.95, p &lt; 0.01). Conversely, S. isodon displayed asynchronous fluctuations in abundance across various habitats, likely attributable to competition with Laxmann’s shrew, which tends to displace S. isodon from its preferred larch forest during periods of elevated population density. The interannual variations in energy reserve content for both shrew species were remarkably similar, with no significant differences observed between habitats. The nature of these variations suggested insufficient feeding conditions for the animals during years of high overall abundance, with the dominant species, S. caecutiens, contributing most significantly to this phenomenon in both habitats of the upper Kolyma. The results indicate that interspecific relationships play a crucial role in shaping both territorial distribution and food availability for these shrew species.

High Resource Overlap and a Consistently Generalised Pattern of Interactions in a Bat-Flower Network in a Seasonally Dry Landscape.

Pollination is an ecosystem process that is crucial to maintain biodiversity and ecosystem function. Bats are important pollinators in the tropics and are an integral part of complex plant-pollinator interaction networks. However, network analysis-based approaches are still scarce at the plant species and bat community levels. We used metabarcoding to identify plant taxa present in pollen from fur and faecal samples collected across 1 year from three nectar-feeding bat roosts in central Mexico. We calculated the frequency of occurrence of plant taxa and assembled a zoocentric network of bat-plant interactions. We constructed a year-long network, encompassing the entire period of sampling, two seasonal networks comprising the wet and dry seasons, and six individual networks from sampling at two-month intervals across the year. Four species of nectar-feeding bats interacted with 36 plant species from 16 families. We found highly generalised interaction patterns across networks corresponding with opportunistic feeding behaviour by bats, with little seasonal variation in network structure. There was high resource overlap between bat species, and bats visited a diverse range of plant species even during periods with a high abundance of particular resources in the landscape. The diverse diet of nectar-feeding bats emphasises the importance of floristically rich natural habitats in the landscape to provide reliable foraging resources year-round in a seasonally variable system. While a generalised network structure is thought to increase robustness, further research is necessary to understand how fluctuations in pollinator abundance and diversity in the face of land use and climate change may impact bat-flower networks and the consequences to plant communities.

Planetary Waves Drive Horizontal Variations in Trace Species in the Venus Deep Atmosphere

Abstract The deep atmosphere of Venus remains mysterious because of the planet’s high, optically thick cloud decks. While phenomena such as the observed decadal fluctuations in sulfur dioxide abundance above the clouds could shed light on conditions below, poor understanding of vertical and horizontal transport limits such an approach. Nightside spectral windows permit observation of trace gas species in the lower atmosphere, but incomplete understanding of the circulation makes the distribution of these species challenging to interpret. We performed two simulations with the Venus Planetary Climate Model including an age of air calculation to investigate tracer transport (a) between the surface and the stagnant lower haze layer and (b) between the cloud deck and the observable upper atmosphere. We find a timescale on the order of many decades for surface-to-lower haze layer transport and ∼1.4 yr from the lowest cloud deck to 101 km. The extreme slowness of transport from the surface to the clouds makes it unlikely that compositional variability at the surface could affect the upper atmosphere sulfur dioxide abundance on observed timescales. Planetary-scale Rossby waves with a zonal wavenumber of 1 in both hemispheres are found to circumnavigate the planet in the deep atmosphere in 36 Earth days. These waves are associated with gyres that collect tracers and areas of upwelling that transport them to higher altitudes, leading to significantly younger air at polar latitudes in the altitude range of 25–45 km. The existence of chemically enhanced traveling Rossby gyres could explain the observed deep atmosphere carbon monoxide variability.

Stopover by migrant Montagu's Harriers in the Thar Desert is determined by vegetation greenness and grasshopper abundance but not locust outbreaks

Food availability is an important criterion for migrant birds' decision to stay or leave a stopover site. This can vary depending on the conditions at the site. The Thar Desert of the Indian subcontinent is a major stopover area for birds wintering further south in the region. The desert is also prone to stochastic outbreaks of desert locusts that often coincide with the stopover time of migrating birds. Between 2017 and 2022, we tracked nine tagged Montagu's Harriers (Circus pygargus) using PTT and GPS-GSM transmitters to determine if the stopover duration at stopover sites in the desert is influenced by the availability of migratory locusts or resident grasshoppers and the strategies the birds employ, such as, foraging over a wide area or multiple sites to ensure refuelling during stopover. The mean stopover duration during the 2019 peak locust outbreak was 12 days compared to 18 days in other years. Birds did not track locust occurrence deliberately and preferred to stopover at the same sites each year, irrespective of locust outbreaks. The stopover duration at stopover sites appears to be linked to arrival date, vegetation greenness (NDVI) and marginally to grasshopper abundance. We conclude that the stochastic availability of locusts at stopover sites may provide only an opportunistic source of abundant food for migrant harriers and does not seem to affect their stopover duration. Instead, they choose a more stable strategy of relying on resident grasshoppers, less prone to strong fluctuations in abundance and distribution at the stopover sites.

Differences in phenology across three trophic levels between two Afrotropical sites separated by four degrees latitude.

Birds time their life cycle events to favourable windows in environmental conditions. In tropical environments, where photoperiod variation is small, birds show high variability in the timing of life cycle stages, yet these species have been severely underrepresented in phenology research. Here, we investigated temporal patterns in bird life cycles and resource availability in two sites in tropical Africa: Weppa (Nigeria, 7° N) and Elat (Cameroon, 3° N). In these sites we captured common bulbuls (Pycnonotus barbatus), a widespread generalist, and recorded breeding and moult over a 12-month period. Simultaneously, we surveyed fruiting tree and arthropod abundance. Our aim was to quantify seasonal patterns in moult and breeding in bulbuls at both sites, and link them to fluctuations in local fruit and arthropod abundance and precipitation. Moult was more seasonal than breeding in both sites, and seasonality of both life cycle events was stronger in Nigeria than Cameroon. The peak timing for moult was 1.5 months earlier in Nigeria than Cameroon. Seasonal variation in abundance of fruiting trees and arthropods was different between sites, as were the associations with breeding and moulting. In Nigeria, we found a positive association between moult and arthropod abundance, and a negative one with fruiting tree abundance. In contrast, in Cameroon moult was associated with higher precipitation, while breeding occurred at times with higher fruit abundance. Our results provide evidence that, even in similar habitats separated by four degrees in latitude, seasonal patterns across three trophic levels are variable. Understanding links between environmental conditions and life cycle events can reveal potential vulnerabilities of tropical species, and guide conservation efforts.

A Biogeochemical Comparison of three Representative Lakes of Costa Rica

ABSTRACT Lakes are widely distributed across Costa Rica, from coasts to the highest elevation regions, and located in the main terrestrial biomes. However, updated biogeochemical information about the main types of lakes is still lacking. We present comparative biogeochemistry (water chemistry, stable isotopes, and picoplankton) for a coastal lake (Lake Madre de Dios, LMD), a volcanic lake (Lake Barva, LB), and a glacial lake (Lake Ditkevi, LD). Sampling was conducted between February-November 2022 including dry and rainy seasonal conditions. Hydrological and chemical conditions were evaluated using water and carbon stable isotopes, dissolved organic matter (DOM), major ions, and microbiota analysis. Isotopic data (δ18O, δ13CDIC) confirmed lower evaporative losses for the maar and tarn lakes and productivity response to precipitation inputs. Excitation/Emission matrices confirmed the prevalence of fulvic and humic acids in the coastal and glacial lakes, mainly aromatic proteins and soluble microbial by-products in the volcanic lake. Picophytoplankton (PPP, ∼0.2 to 10 μm) was mainly represented by phycocyanin-rich picocyanobacteria (PC-Pcy) events in the three lakes, but maar and tarn lakes had more representation of phycoerythrin (PE-Pcy) events. We confirmed fluctuations in PPP cell abundance in the lakes lower than in temperate lakes. Like in other eutrophic lakes, Pcy also dominated over picoeukaryotes (Peuk) algae abundance. This work seeks to promote adopting an ecosystem approach to study the biogeochemical functioning of tropical lakes using the combination of chemical, hydrological, and biological data and to provide baseline information for future studies (e.g., climate change and pollution impacts) on tropical lakes of Costa Rica.

Calcareous nannofossil biostratigraphy, bioevents, and palaeoecological interpretation of the lower-middle Miocene outcrops in west central Sinai (Egypt)

The Burdigalian/Langhian (B/L) boundary has not yet been designated as a Global Stratotype Section and Point (GSSP), despite various proposed zonal schemes. In the Gulf of Suez region of Egypt, the Burdigalian-Langhian successions are notable for hosting significant hydrocarbon reservoirs within a tectonic rift setting. Therefore, biostatigraphy plays a crucial role in exploration endeavors in this area. The nannofossil biostratigraphy is investigated in two sections, Wadi Baba and Wadi Gharandel, of the lower-middle Miocene from west-central Sinai. Three biozones, NN3 (Sphenolithus belemnos) Zone, NN4 (Helicosphaera ampliaperta) Zone, and NN5 (Sphenolithus heteromorphus) Zone, are identified from the studied interval. The NN4 Zone could be divided into MNN4a/b and MNN4c. Important biovents are discussed, such as the S. heteromorphus paracme interval and the first occurrence and evolution of the Discoaster exilis and Discoaster variabilis groups. Based on the cluster analysis, the recorded taxa can be subdivided into four groups that reflect their palaeoclimatic preferences. The paleoecological interpretation of the studied Rudies Formation indicates prevailing cool and eutrophic nutrient conditions based on the dominance of taxa such as Coccolithus pelagicus, Reticulofenestra minuta, and Cyclicargolithus floridanus. The nannofossil taxa responses to sea level curve are interpreted. Fluctuations in taxa abundance and diversity indicate a slight rise in the sea level at the base of the Burdigalian followed by sudden drop in the sea level at the middle Burdigalian. High sea-level conditions prevailed again until the B/L boundary. During the Langhian period, many small-scale fluctuations in sea-level curve are detected.

Spatial and Temporal Variation in the Antagonistic and Mutualistic Interactions among Seed Predator Arthropods, Seed-Dispersing Birds, and the Spanish Juniper.

Plants interact with both antagonistic and mutualistic animals during reproduction, with the outcomes of these interactions significantly influencing plant reproductive success, population dynamics, and the evolution of plant traits. Here, we investigated the spatial and temporal variations in the interactions between Juniperus thurifera, its seed-dispersing birds, and three specific arthropod species that attack the fleshy cones during the predispersal period. We assessed how plant traits affect levels of cone damage by arthropods and seed dispersal by birds, the occurrence of competition among arthropod species, and the impact of seed predators on the activity of frugivores. Plant traits, cone damage by arthropods, and seed dispersal by birds showed spatiotemporal variability. Fluctuation in cone abundance was the leading factor determining damage by arthropods and bird dispersal with a secondary role of cone traits. Large crops satiated predispersal seed predators, although the amount of frugivory did not increase significantly, suggesting a potential satiation of bird dispersers. Crop size and cone traits at individual trees determined preferences by seed predator species and the foraging activity of bird dispersers. Competition among arthropods increased during years of low cone production, and seed predators sometimes negatively affected bird frugivory. High supra-annual variations in cone production appear to be a key evolutionary mechanism enhancing J. thurifera reproductive success. This strategy reduces the impact of specialized seed predators during years of high seed production, despite the potential drawback of satiating seed dispersers.

A Study on the Impact of Environmental Factors on Chub Mackerel Scomber japonicus Fishing Grounds Based on a Linear Mixed Model

Chub mackerel (Scomber japonicus) is a commercially important fish species which are widely distributed in the North Pacific. Based on the fishery data from China’s high-sea light-purse seine fishing from 2014 to 2020 and the marine environment factors, a mixed linear model considering the actual spatiotemporal stratification of the catch per unit effort (CPUE) was established to analyze the fixed and random effects of marine environmental factors on the CPUE of chub mackerel and to investigate the relationship between the abundance of chub mackerel resources in the Northwest Pacific and two marine environmental factors: sea surface temperature (SST) and chlorophyll-a concentration (CHL). The results showed that SST had a significant fixed effect on the CPUE. In contrast, the natural logarithm of chlorophyll (logCHL) had no fixed effect on the CPUE. Based on the monthly analysis, random fluctuations were observed in the impact of logCHL on the CPUE. LogCHL and CPUE show a positive correlation during spawning and wintering periods and a negative correlation during the feeding period. The study showed that when fishery sampling data exhibit spatiotemporal stratification, linear mixed models can effectively incorporate both the fixed and random effects of environmental factors on the CPUE of chub mackerel. Linear mixed models can play an important role in analyzing the fluctuations in resource abundance and the mechanisms governing the formation of fishing grounds for chub mackerel in the Northwest Pacific.

Temporal-Spatial Fluctuations of a Phytoplankton Community and Their Association with Environmental Variables Based on Classification and Regression Tree in a Shallow Temperate Mountain River.

The effects of environmental factors on phytoplankton are not simply positive or negative but complex and dependent on the combination of their concentrations in a fluctuating environment. Traditional statistical methods may miss some of the complex interactions between the environment and phytoplankton. In this study, the temporal-spatial fluctuations of phytoplankton diversity and abundance were investigated in a shallow temperate mountain river. The machine learning method classification and regression tree (CART) was used to explore the effects of environmental variables on the phytoplankton community. The results showed that both phytoplankton species diversity and abundance varied fiercely due to environmental fluctuation. Microcystis aeruginosa, Amphiprora sp., Anabaena oscillarioides, and Gymnodinium sp. were the dominant species. The CART analysis indicated that dissolved oxygen, oxidation-reduction potential, total nitrogen (TN), total phosphorus (TP), and water temperature (WT) explained 36.00%, 13.81%, 11.35%, 9.96%, and 8.80%, respectively, of phytoplankton diversity variance. Phytoplankton abundance was mainly affected by TN, WT, and TP, with variance explanations of 39.40%, 15.70%, and 14.09%, respectively. Most environmental factors had a complex influence on phytoplankton diversity and abundance: their effects were positive under some conditions but negative under other combinations. The results and methodology in this study are important in quantitatively understanding and exploring aquatic ecosystems.

Does host migration affect host-parasite interaction? Migrant birds harbor exclusive parasites but have similar roles in parasite-host networks.

Parasites comprise a substantial portion of global biodiversity and play critical roles in shaping ecosystems by modulating trophic networks and affecting their hosts' abundance and distribution. The dynamics of host migration introduce new complexity to these relationships. From the host perspective, migratory behavior can either act as a defense mechanism or augment exposure to a broader spectrum of pathogens. Conversely, for parasites, host migration represents a mechanism for their dispersion and an opportunity to infect new host species. This study investigates the complex interplay between migration and parasite-host interactions, focusing on the interaction between hosts and avian malaria and malaria-like parasites in the Brazilian Atlantic Rain Forest. We captured 1466 birds representing 70 different species, uncovering 322 infections with Plasmodium/Haemoproteus parasites. We observed variations in migration timing and fluctuations in host abundance across months. By comparing the observed patterns of interaction of migratory and non-migratory birds to patterns of interaction expected at random, we show that migration affects the roles hosts take in the parasite-host network. Interestingly, despite the fact migratory species hosted more exclusive and distinct parasites, migrants did not occupy central network positions, which are mostly occupied by resident birds. Overall, we highlight the role of resident birds as a key species within parasite-host communities and the high specialization among avian haemosporidians and their hosts.

Asynchronous abundance fluctuations can drive giant genotype frequency fluctuations.

Large stochastic population abundance fluctuations are ubiquitous across the tree of life1-7, impacting the predictability of population dynamics and influencing eco-evolutionary outcomes. It has generally been thought that these large abundance fluctuations do not strongly impact evolution, as the relative frequencies of alleles in the population will be unaffected if the abundance of all alleles fluctuate in unison. However, we argue that large abundance fluctuations can lead to significant genotype frequency fluctuations if different genotypes within a population experience these fluctuations asynchronously. By serially diluting mixtures of two closely related E. coli strains, we show that such asynchrony can occur, leading to giant frequency fluctuations that far exceed expectations from models of genetic drift. We develop a flexible, effective model that explains the abundance fluctuations as arising from correlated offspring numbers between individuals, and the large frequency fluctuations result from even slight decoupling in offspring numbers between genotypes. This model accurately describes the observed abundance and frequency fluctuation scaling behaviors. Our findings suggest chaotic dynamics underpin these giant fluctuations, causing initially similar trajectories to diverge exponentially; subtle environmental changes can be magnified, leading to batch correlations in identical growth conditions. Furthermore, we present evidence that such decoupling noise is also present in mixed-genotype S. cerevisiae populations. We demonstrate that such decoupling noise can strongly influence evolutionary outcomes, in a manner distinct from genetic drift. Given the generic nature of asynchronous fluctuations, we anticipate that they are widespread in biological populations, significantly affecting evolutionary and ecological dynamics.

The relationship of microbial biodiversity and clinical forms of oral lichen planus: analysis based on 16S rRNA sequencing

BACKGROUND: The composition and changes of microbiota have a significant impact on overall health and the development of various diseases. Of particular relevance is the problem of changes in the oral microbiota in patients with lichen planus of the oral mucosa. Studying the relationship between the composition of the oral microbiota and the pathogenesis of oral lichen planus will improve the understanding of the mechanisms of this disease. Thus, this topic is of considerable interest to a wide range of specialists in the field of medicine and biology. AIM: Detailed analysis of oral cavity microbiota and establishment of potential pathogenetic microbial associations with oral lichen planus. MATERIALS AND METHODS: The study included samples from patients diagnosed with various forms of oral red squamous lichen planus (lichen planus erosive-ulcerative) and a control group. The investigation was based on analyzing microbial diversity metrics (alpha and beta diversity), relative abundance of bacterial taxa, and identification of unique bacterial taxa in the oral red squamous lichen planus patients. This analysis utilized the 16S rRNA sequencing method. RESULTS: The analysis revealed a rich bacterial composition in patients with oral lichen planus, which was significantly different from that in the control group. Differences were also observed between the subgroups, especially between the typical and erosive-ulcerative forms of the disease. Notably, beta diversity did not show significant differences between the groups, indicating a similar overall microbiota composition despite fluctuations in the relative abundance of species. Nevertheless, the typical clinical form of the disease demonstrated more significant differences in the microbiota structure compared to the hyperkeratotic and erosive-ulcerative forms. Furthermore, analysis of the study groups revealed the presence of 50% shared microbial species, while the other half was represented by unique species associated with oral lichen planus. Regarding the subgroups, it was found that unique microorganisms correlated with the typical and erosive-ulcerative forms, respectively, providing a deeper understanding of the specific microbiological profile in the context of this disease. CONCLUSION: The study confirmed the hypothesis of an association between the microbiota composition and oral lichen planus, which may be of importance for the development of novel therapeutic approaches.