Flooded Soil Research Articles

Modulation of irrigation-induced microbial nitrogen‑iron redox to per- and polyfluoroalkyl substances' water-soil interface release in paddy fields: Activation or immobilization?

Understanding the modulation of paddy field irrigation to the migration of per- and polyfluoroalkyl substances (PFAS) at the water-soil interface is pivotal for the management of PFAS pollution in paddy soil and surrounding surface water environments. In flooded soils, soil organic matter was transformed into aromatic protein-like dissolved organic matter (DOM). Meanwhile, Na+, K+, and Mg2+ were translocated into extracellular polymeric substances (EPS) under the catalysis of cation channel enzymes (p < 0.05), provided ion bridging for the binding of DOM and PFAS, and accelerated the accumulation of C4–C9 PFAS in overlying water (41.79–99.14 %). Short-chain PFAS's accumulation in soil solution of drought soils was stimulated by microorganisms secreting soluble microbial by-product-like DOM (53.15–97.96 %). Furthermore, PFAS's distribution in flood soils was dominated by bacterial denitrification and iron-reduction, whereas iron-oxidation and ammoxidation controlled that in drought soils. The transformation of organic carbon including CO and COC caused by irrigation-induced redox modulated PFAS cross-media translocation. Iron‑nitrogen redox in flooded paddy soils immobilized the PFAS's migration into overlying water (p < 0.05). Our findings have profound implications for PFAS's pollution control, surface water environmental protection, and rice production security in paddy fields.

Mature Tubers of Cyperus rotundus Confer Flooding Tolerance by Adopting A “Low-oxygen Quiescence Strategy”, which may Contribute to Its Emergence in Rice Fields

Abstract Purple nutsedge (Cyperus rotundus L.) is one of the world’s resilient upland weeds, primarily spreading through its tubers. Its emergence in rice fields has been increasing, likely due to changing paddy farming practices. This study aimed to investigate how C. rotundus, an upland weed, can withstand soil flooding and become a problematic weed in rice (Oryza sativa L.) fields. The first comparative analysis focused on the survival and recovery characteristics of growing and mature tubers of C. rotundus exposed to soil flooding conditions. Notably, mature tubers exhibited significant survival and recovery abilities in these environments. Based on this observation, further investigation was carried out to explore the morphological structure, non-structural carbohydrates, and respiratory mechanisms of mature tubers in response to prolonged soil flooding. Over time, the mature tubers did not form aerenchyma but instead gradually accumulated lignified sclerenchyma fibers, with lignin content also increasing. After 90 days, the lignified sclerenchyma fibers and lignin contents were 4.0 and 1.1 times higher than those in no soil flooding (CK). Concurrently, soluble sugar content decreased while starch content increased, providing energy storage, and alcohol dehydrogenase (ADH) activity rose to support anaerobic respiration via alcohol fermentation. These results indicated that mature tubers survived in soil flooding conditions by adopting a “low-oxygen quiescence strategy”, which involves morphological adaptations through the development of lignified sclerenchyma fibers, increased starch reserves for energy storage, and enhanced anaerobic respiration. This mechanism likely underpins the flooding tolerance of mature C. rotundus tubers, allowing them to endure unfavorable conditions and subsequently germinate and grow once flooding subsides. This study provides a preliminary explanation of the mechanism by which mature tubers of C. rotundus from the upland areas confer flooding tolerance, shedding light on the reasons behind this weed’s increasing presence in rice fields.

Coupled reduction in arsenic methylation and methanogenesis with silicate amendment in arsenic-enriched paddy soils

Methanogens play an important role in the demethylation of arsenic. Soil amendments that inhibit methanogens can increase dimethylarsinic acid (DMA), which is responsible for straighthead disease in rice. A decrease in methanogenesis caused by silicate fertilizer may increase DMA concentration in paddy soils and rice grains; the relationship between these two factors and their impacts on DMA concentration remains unclear. We applied silicate fertilizer (2 Mg ha−1) to japonica and indica rice grown on arsenic-spiked soils and found a simultaneous reduction in methane emissions and pore-water DMA concentration, compared to no-silicate fertilization. Gene and transcript copies of mcrA and arsM, as well as dominant methanogens and arsenic-methylating microbes decreased significantly with silicate fertilization. However, the sulfate-reducing bacteria and the gene and transcript copies of dsrB did not change significantly in response to the application of silicate fertilizer to paddy soils. The abundance of arsenic methylating microbes was significantly and positively correlated with the abundance of methanogens, but not with the abundance of sulfate-reducing bacteria. Methylomonas and Methylobacter, which harbor the arsM gene, were suppressed under silicate fertilization, suggesting that they have the potential to methylate As and play a crucial role in reducing pore-water DMA in As-enriched flooded paddy soils. Increasing Fe concentration, soil pH, and Eh value decreased pore-water DMA concentration, while decreasing arsenite concentration, arsM and mcrA gene abundance decreased it. While silicate fertilization decreased arsenite and DMA concentrations in pore-water, it had no significant effect on rice DMA content, but significantly decreased arsenite content. Results reveal that methanogens and arsenic-methylating microbes have a synergistic relationship under silicate fertilization that facilitates a significant reduction in methane emissions and DMA concentration in As-enriched paddy soils.

Fe(III) reduction mediates vanadium release and reduction in vanadium contaminated paddy soil under different organic amendments

Vanadium(V) contaminated soil is abundant in iron(Fe) oxides due to co-occurrence of V and Fe bearing minerals. However, biogeochemical transformation of redox-active V and Fe in soil, and the bacteria involved, has remained less investigated. This study explored the extent to which microbial mediated organic decomposition coupled to Fe(III) reduction contributed to V(V) release/reduction in V-contaminated paddy soil under different organic amendments. Soil flooding decreased toxic reducible V while increased less toxic oxidizable V. Glucose and straw promoted V(V) release with temporarily increasing V(V) concentration by 73.59–106.34 mg/kg compared to the control treatment and subsequently promoted V(V) reduction with decreasing V(V) to concentrations eventually similar to the control treatment. Biochar incorporation under glucose and straw amendments moderately alleviated V(V) release. The significantly positive correlation between Fe(II) and V(V) concentrations during the V solubilization process indicated a temporal coupling of Fe(III) reduction and V(V) release. Clostridium, and Massilia mediated Fe(III) reductive dissolution and V(V) release, while Anaeromyxobacter, Sphingomonas, Bryobacter, Acidobacteriaceae and Anaerolineaceae contributed to V(V) reduction. This study provides a deeper understanding of V biotransformation coupled to Fe and C cycling and suggests a remediation strategy for V-contaminated soils via regulating Fe(III) reduction to weaken V(V) release or to promote V(V) reduction.

Phase transformation of schwertmannite changes microbial iron and sulfate-reducing processes in flooded paddy soil and decreases arsenic accumulation in rice (Oryza sativa L.)

Rice (Oryza sativa L.) is known to accumulate inorganic arsenic (iAs) and dimethylarsenate (DMA) in its grains, which threatens both human health and rice yield. Although schwertmannite, a metastable Fe (Ⅲ)-oxyhydroxysulfate mineral with extremely high adsorption capacity for iAs, has been proposed to remediate paddy soil to decrease As accumulation in rice, it remains unclear whether the phase transformation of schwertmannite would occur in flooded paddy soil and how its phase transformation changes the soil microbial processes that impact the accumulation of iAs and DMA in grains. Here, we found that amending As-contaminated paddy soil with 0.5%–1% (w/w) schwertmannite decreased the accumulation of iAs and DMA in grains by 37.41%–43.29% and 50.60%–73.89%, respectively, even though schwertmannite has transformed to goethite and secondary FeS was formed in both rhizosphere and bulk soils. The phase transformation of schwertmannite released a considerable amount of SO42− into porewater, thereby increasing the abundances of both sulfate-reducing bacteria and the dsrB gene but decreasing the abundance of iron-reducing bacteria. This result suggested that schwertmannite phase transformation has promoted sulfate-reducing process and weakened iron-reducing process in flooded soil. Such promoted sulfate-reducing process and weakened iron-reducing process in paddy soil can decrease the reductive dissolution of As-bearing (oxyhydr)oxides, increase the formation of secondary FeS mineral for decreasing porewater As concentration, and strengthen the role of Fe plaque as a barrier for As absorption by rice. Additionally, the application of schwertmannite has decreased the abundance of arsM gene and weakened As methylation process in soil. Therefore, the effective decrease of iAs and DMA accumulation in rice grains by schwertmannite can not only be ascribed to the adsorption capacity of schwertmannite for As and the adsorption or incorporation of As by transformation products, but also contributed by the promoted sulfate-reducing process and the weakened iron-reducing process in flooded paddy soil.

Seasonal Controls on Microbial Depolymerization and Oxidation of Organic Matter in Floodplain Soils.

Floodplain soils are vast reservoirs of organic carbon often attributed to anaerobic conditions that impose metabolic constraints on organic matter degradation. What remains elusive is how such metabolic constraints respond to dynamic flooding and drainage cycles characteristic of floodplain soils. Here we show that microbial depolymerization and respiration of organic compounds, two rate-limiting steps in decomposition, vary spatially and temporally with seasonal flooding of mountainous floodplain soils (Gothic, Colorado, USA). Combining metabolomics and -proteomics, we found a lower abundance of oxidative enzymes during flooding coincided with the accumulation of aromatic, high-molecular weight compounds, particularly in surface soils. In subsurface soils, we found that a lower oxidation state of carbon coincided with a greater abundance of chemically reduced, energetically less favorable low-molecular weight metabolites, irrespective of flooding condition. Our results suggest that seasonal flooding temporarily constrains oxidative depolymerization of larger, potentially plant-derived compounds in surface soils; in contrast, energetic constraints on microbial respiration persist in more reducing subsurface soils regardless of flooding. Our work underscores that the potential vulnerability of these distinct anaerobic carbon storage mechanisms to changing flooding dynamics should be considered, particularly as climate change shifts both the frequency and extent of flooding in floodplains globally.

Biochar improves morpho-physiological growth, osmolyte accumulation, nutrients balance, anti-oxidative defense and oil productivity of Brassica under flooding stress

Soil flooding is a serious abiotic stress that can repress plant growth and yield. The intensity of flooding stress is continuously increasing owing to rapid climate change and changes in rain intensity and frequency. Biochar (BC) emerges as an important soil amendment to mitigate adverse impacts of abiotic stress. The role of BC against different stresses is well reported, however, its role under flooding stress is not determined yet. Thus, this experiment was conducted to determine the role of BC on the performance of brassica crops under flooding stress. The experiment was comprised of well-watered (WW) and flooding stress (FS) conditions and biochar application: control, 1% biochar, and 2.5% biochar. The results indicated that flooding stress stunted the plant growth and impaired the photosynthetic pigments, leaf water status, osmolytes yield and yield traits, and oil concentration and increased the electrolyte leakage (EL), hydrogen peroxide (H2O2) and malondialdehyde (MDA) concentration. The application of BC at the rate of 2.5% mitigated the adverse impacts of salinity and upgraded the antioxidant activities (~50-120%), reduced the oxidative stress markets (~70-300%), and increased the leaf water status, photosynthetic pigments, osmolyte accumulation, nutrient uptake, yield traits, and oil contents. In conclusion, BC application can improve the productivity and oil yield of brassica under drought stress by improving plant physiological and biochemical functioning. However, more in depth studies are direly needed to explore the mechanism of BC to induce flood tolerance.

Iron mineral dynamics in soils and sediments: Moving the frontier toward in‐situ studies

Oxygen is used up very quickly in wet or flooded soils, after which other types of respiration set in. Iron is a very important electron acceptor in soil environments for organisms that respire organic carbon to gain energy, processes which have an important influence on the behaviour of many nutrients and contaminants, as Professor Ruben Kretzschmar explains.

Leaf Gas Film 1 promotes glycerol ester accumulation and formation of a tight root barrier to radial O2 loss in rice.

Rice (Oryza sativa L.) and many other wetland plants form an apoplastic barrier in the outer parts of the roots to restrict radial O2 loss to the rhizosphere during soil flooding. This barrier facilitates longitudinal internal O2 diffusion via gas-filled tissues from shoot to root apices, enabling root growth in anoxic soils. We tested the hypothesis that Leaf Gas Film 1 (LGF1), which influences leaf hydrophobicity in rice, plays a crucial role in tight outer apoplastic barriers formation in rice roots. We examined the roots of a rice mutant (dripping wet leaf 7, drp7) lacking functional LGF1, its wild type, and an LGF1 overexpression line for their capacity to develop outer apoplastic barriers that restrict radial O2 loss. We quantified the chemical composition of the outer part of the root and measured radial O2 diffusion from intact roots. The drp7 mutant exhibited a weak barrier to radial O2 loss compared to the wild type. However, introducing functional LGF1 into the mutant fully restored tight barrier function. The formation of a tight barrier to radial O2 loss was associated with increased glycerol ester levels in exodermal cells, rather than differences in total root suberization or lignification. These results demonstrate that, in addition to its role in leaf hydrophobicity regulation, LGF1 plays an important role in controlling the function of the outer apoplastic barriers in roots. Our study suggests that increased deposition of glycerol esters in the suberized root exodermis establishes a tight barrier to radial O2 loss in rice roots.

Partitioning denitrification pathways in N2O emissions from re-flooded dry paddy soils

In flooded paddy fields, peak greenhouse gas nitrous oxide (N2O) emission after rewetting the dry soils is widely recognised. However, the relative contribution of biotic and abiotic factors to this emission remains uncertain. In this study, we used the isotope technique (δ18O and δ15NSP) and molecular-based microbial analysis in an anoxic incubation experiment to evaluate the contributions of bacterial, fungal, and chemical denitrification to N2O emissions. We collected eight representative paddy soils across southern China for an incubation experiment. Results show that during the 10-day incubation period, the net N2O emissions were mainly produced by fungal denitrification, which accounted for 58–77% in six of the eight investigated flooded paddy soils. In contrast, bacterial denitrification contributed 6–15% of the net N2O emissions. Moreover, around 11–35% of the total N2O emissions were derived from chemical denitrification in all soil types. Variation partitioning analysis (VPA) and principal component analysis (PCA) demonstrated that initial soil organic carbon (OC) concentrations were the primary regulator of N2O source patterns. Soils with relatively lower OC concentration (7–15 mg g−1) tend to be dominated by fungal denitrification, which accounted for the net N2O production at the end of the incubation period. Overall, these findings highlight the dominance of the fungal denitrification pathway for N2O production in flooded paddy soils, which predominates in soils with relatively lower OC content. This suggests that fungal contribution should be considered when optimizing agricultural management system timing to control N2O emissions in flooded paddy soil ecosystems, and for the relevant establishment of predictive numerical models in the future.

Silicon weakens the outer apoplastic barrier in roots of rice and delays its formation, resulting in increased Na+ and Cl− fluxes to the shoot

In rice, silicon can mitigate abiotic and biotic stresses. We therefore investigated the effect of Si on key root traits related to soil flooding and salinity tolerance with emphasis on the outer apoplastic barrier and cortical aerenchyma. We tested the hypothesis that Si application alters the phenotypic response of these root traits by growing rice in nutrient solutions without or with Si, designed to mimic drained or flooded soils. We measured the barrier strength through resistance to O2 and water of the outer parts of adventitious roots along with cortical aerenchyma and other root structural traits. We found that Si delayed the barrier formation and caused lower amounts of inducible cortical aerenchyma. The delay in barrier formation resulted in higher xylem loading of Na+ and Cl-, i.e., the sap flux of both ions was significantly higher for plants with access to Si. The increased ion fluxes correlated with lower lignin and suberin deposition in the outer part of the root. Consequently, we do not recommend using Si application to alleviate combined stress of salinity and soil flooding in rice, since the barrier was more permeable to O2, and the aerenchyma formation was less pronounced in roots with Si.

Significant interaction between root system architecture and stratified phosphorus availability for the initial growth of rice in a flooded soil culture

Phosphorus (P) deficiency is a major limiting factor for rice production in the tropics. The root system architecture (RSA) may play a significant role to capture P efficiently in soils; however, its function is poorly understood in flooded and puddled soil cultures. Two near-isogenic lines (NILs) contrasting RSA—qsor1-NIL (nonfunctional allele of qSOR1; shallow RSA) and Dro1-NIL (functional allele of DRO1; deep RSA)—were repeatedly grown for approximately 6 weeks in pots with three stratified P treatments. The treatments simulated P deficient conditions in puddled and subsoil layers, P available in the puddled layer, and P available in puddled and subsoil layers, that is, −P−P: no P applied in either the top-half (0–14 cm) or bottom-half (14–28 cm) layers; +P−P: P applied only in the top-half layer; and +P + P: P applied in the top-half and bottom-half layers, respectively. A significant interaction was observed between genotype and P treatment. The Dro1-NIL had a greater root surface area in the bottom half layer, which was advantageous for capturing P in the subsoil layer and resulted in greater biomass and P uptake in the +P + P treatment. Contrarily, the qsor1-NIL had a greater root surface area and longer root hair, resulting in greater biomass and P uptake in the −P−P treatment. The mechanism is unclear; however, the pleiotropic effect of qsor1, namely enhancing root hair elongation, might be more advantageous to explore P with minimal carbon costs than elongating nodal and lateral roots when P is not available in deep soil layers. No genotype differences were observed in the +P−P treatment, implying no apparent topsoil P-foraging effect of the shallow RSA in the flooded soil culture. The roles of RSA and root hairs should attract further attention for the genotypic improvement of lowland rice under P deficiency conditions in the tropics.

Anatomical and physiological responses of roots and rhizomes in Oryza longistaminata to soil water gradients.

Roots and rhizomes are critical for the adaptation of clonal plants to soil water gradients. Oryza longistaminata, a rhizomatous wild rice, is of particular interest for perennial rice breeding due to its resilience under abiotic stress conditions. While root responses to soil flooding are well-studied, rhizome responses to water gradients remain underexplored. We hypothesize that physiological integration of Oryza longistaminata mitigates heterogeneous water deficit stress through interconnected rhizomes, and both roots and rhizomes respond to contrasting water conditions. We investigated the physiological integration between mother plants and ramets, measuring key photosynthetic parameters (photosynthetic and transpiration rate, and stomatal conductance) using an Infrared Gas Analyzer. Moreover, root and rhizome responses to three water regimes (flooding, well-watered, and water deficit) were examined by measuring radial water loss and apparent permeance to O2, along with histochemical and anatomical characterization. Our experiment highlights the role of physiological integration via interconnected rhizomes in mitigating water deficit stress. Severing rhizome connections from mother plants or ramets exposed to water deficit conditions led to significant decreases in key photosynthetic parameters, underscoring the importance of rhizome connections in bidirectional stress mitigation. Additionally, O. longistaminata rhizomes exhibited constitutive suberized and lignified apoplastic barriers, while such barriers were induced in roots under water stress. Anatomically, both rhizomes and roots respond similarly to water gradients, showing thinner diameters under water deficit conditions and larger diameters under flooding conditions. Our findings indicate that physiological integration through interconnected rhizomes helps alleviate water deficit stress when either the mother plant or the ramet is experiencing water deficit, while the counterpart is in control conditions. Moreover, O. longistaminata can adapt to various soil water regimes by regulating anatomical and physiological traits of roots and rhizomes.

Ornamental Grasses Tolerate Cyclical Flood, Drought, and Submergence During Stormwater Management, but Conditions and Survival Vary by Species

Perennial ornamental grasses are often recommended for rain gardens, but few data support their use. We conducted two experiments to evaluate the ability of ornamental grass cultivars to grow while subjected to cyclical flooding, submergence, and drought typical of rain gardens. Our objectives were to determine the effects of cyclical flood and drought (Expt. 1) and submergence depth and duration (Expt. 2) on grass growth and survival. Seven cultivars were evaluated during greenhouse trials, including Pixie Fountain tufted hairgrass [Deschampsia cespitosa (L.) P. Beauv.], Northwind switchgrass (Panicum virgatum L.), Red October big bluestem (Andropogon gerardii Vitman), Purpurascens Chinese silvergrass (Miscanthus sinensis Andersson), Blue Heaven® little bluestem [Schizachyrium scoparium (Michx.) Nash], Blonde Ambition blue grama grass [Bouteloua gracilis (Kunth) Lag. ex Griffiths], and Karl Foerster feather reed grass [Calamagrostis ×acutiflora (Schrad.) DC]. During Expt. 1, grasses underwent four cycles of flooding duration (2 days or 7 days) followed by drought (drying to volumetric soil water contents of 0.14 or 0.07 cm3·cm−3). During Expt. 2, grasses were cyclically submerged at 15 or 30 cm above the soil surface for 2, 4, or 7 days, followed by floodwater removal and drainage for 2 days before being resubmerged. Cyclical submergence continued until the 7-day submergence treatments completed four cycles. Both experiments were replicated in a full factorial randomized complete block design. Controls were included in both experiments. Plants were measured to determine plant height, shoot count, visual damage rating, shoot dry weight, and root dry weight. Floodwater chemistry and soil reducing conditions were measured during Expt. 2. Chinese silvergrass and switchgrass survived cyclical soil flooding/drought and submergence for 7 days at a depth of 30 cm while maintaining acceptable foliar damage. All grasses survived cyclical flood and drought when the soil volumetric water content was maintained at 14%, suggesting they can withstand periodic soil flooding as long as the water is not too deep. As water depth and duration increased from 4 days to 7 days, little bluestem, blue grama grass, and feather reed grass experienced significant foliar damage. Tufted hair grass and big bluestem experienced significant foliar damage when submerged for 2 days. Our results showed that perennial ornamental grasses can tolerate cyclical flood and drought and periodic submergence, but that plant conditions and survival vary, which can inform strategic plant placement within rain gardens, bioretention basins, and other stormwater management systems.

Exposure behaviour to Escherichia coli among households in Imvepi refugee settlement, Terego district Uganda

IntroductionExposure to Escherichia coli (E. coli) is a risk factor for diarrhoeal diseases, which pose a significant problem in refugee settlements. Refugee populations are exposed to faecal microorganisms through multiple pathways including sub-optimal sanitary facilities, contaminated drinking water, produce and food, flood water, bathing water, and soil among others. While these pathways are well-documented, specific exposure behaviours remain underexplored. We assessed exposure behaviour to E. coli among households in Imvepi refugee settlement, Uganda, and provided evidence-based recommendations for the design of interventions to reduce excreta-related disease in refugee settlements.MethodsGuided by the Sanitation Safety Planning approach, we surveyed 426 households in Imvepi refugee settlement, Uganda, using a digitized questionnaire and an observation checklist. We collected data on the background characteristics and exposure behaviour of women and emancipated girls (minors living on their own, having borne a child, married, or pregnant). The outcome variable, E. coli exposure behaviour, was measured using a five-point Likert scale, assessing behaviours that increase the risk of exposure. Data were cleaned in Microsoft Excel and analyzed in Stata version 17. Descriptive statistics were performed to summarize the data. We used modified Poisson regression to determine the factors associated with the outcome.ResultsOver 59.4% (253) exhibited high-risk exposure behaviour. Residing in compound homes (Adjusted Prevalence Ratio (APR) = 0.72, 95% Confidence interval (CI): 0.58–0.90), being aged 35–49 years (APR = 0.76, 95% CI: 0.60–0.97), having household heads with post-primary education (APR = 0.54, 95% CI: 0.38–0.77), high knowledge (APR = 0.69, 95% CI: 0.59–0.80), and high-risk perceptions regarding exposure to E. coli (APR = 0.75, 95% CI: 0.64–0.88) were associated with a lower prevalence of high-risk E. coli exposure behaviours. Conversely, having sanitary facilities with excreta overflowing from the squat hole (APR = 1.26, 95% CI: 1.08–1.48) was associated with a higher prevalence of high-risk exposure behaviours.ConclusionThe study indicates a substantial prevalence of high-risk E. coli exposure behaviours in the refugee settlement.. There’s a need to implement behaviour change interventions targeted at preventing or minimizing exposure, especially among households whose heads have low education attainment, those with young caretakers and those with limited knowledge and low-risk perceptions regarding exposure to E. coli.

Converting flooded rice to dry farming can alleviate MeHg accumulation in grains

The study explored the impact of water management on rice cultivation in mercury-contaminated paddy soil. The objective was to analyze the characteristics of mercury translocation by converting flooded soils to dry farming (non-flooded) to alleviate mercury accumulation in rice grains. The experiment was conducted over three consecutive rice-growing seasons, employing two distinct water management models: a continuously flooded rice cultivation mode and a flooded rice planting mode in the first season, followed by a non-flooded rice farming mode in the second and third seasons. The results showed that the change from flooded to non-flooded rice cultivation patterns presented extremely excellent environmental potential for inhibiting the uptake of both methylmercury and total mercury in rice. When transitioning from flooded cultivation to dry farming, the concentration of methylmercury and total mercury in the grains of non-flooded rice decreased by 87.15 % and 9.57 %, respectively, compared to that in the grains of flooded rice. In the third season, the methylmercury and total mercury in the grains of non-flooded rice decreased further by 95.03 % and 69.45 %, respectively. This study verified that the conversion of rice cultivation from flooded to non-flooded is an efficient strategy for suppressing the accumulation of methylmercury in rice grains, and it might offer a promising solution for managing soil mercury risks and ensuring the safety of rice for human consumption.

Assessment of waterlogging-induced changes in enzymatic antioxidants and carbohydrate metabolism in peanuts genotypes

Soil flooding, manifesting as submergence or waterlogging stress, significantly impacts plant species composition and agricultural productivity, particularly in regions with low rainfall. This study investigates the biochemical responses of two peanut (Arachis hypogaea L.) genotypes, DH-86 and GJG-32, under waterlogging stress. The experiment involved in-vivo pot trials where peanut plants were subjected to continuous waterlogging for 12 days at the flowering stage. Biochemical analyses of leaves conducted and revealed significant alterations in enzyme activities and metabolite concentrations. Key findings include variations in superoxide dismutase (SOD), catalase (CAT), guaiacol peroxidase (GPOD), α-amylase, invertase, acid phosphomonoesterase activities, and changes in starch, proline, reducing sugars, and chlorophyll content. SOD, CAT, and GPOD activities exhibited differential responses between genotypes, highlighting DH-86's quicker recovery post-waterlogging. Notably, DH-86 demonstrated higher resilience, reflected in its rapid normalization of biochemical parameters, while GJG-32 showed prolonged stress effects. These findings underscore the importance of antioxidative enzyme systems in mitigating oxidative damage induced by waterlogging. This study enhances our understanding of the biochemical adaptations of peanut genotypes to waterlogging stress, offering valuable insights for breeding programs focused on improving flood tolerance in crops.

Soil flooding filters evolutionary lineages of tree communities in Amazonian riparian forests.

Inundations in Amazonian black-water river floodplain result in the selection of different tree lineages, thus promoting coexistence between species. We investigated whether Amazonian tree communities are phylogenetically structured and distributed along a flooding gradient from irregularly flooded forests along streams embedded within upland (terra-firme) forest to seasonally flooded floodplains of large rivers (igapós). Floristic inventories and hydrological monitoring were performed along the Falsino River, a black-water river in the eastern Amazon within the Amapá National Forest. We constructed a presence-and-absence matrix and generated a phylogeny using the vascular plant database available in GenBank. We calculated the standardized values of the metrics of phylogenetic diversity (ses.PD), average phylogenetic distance (ses.MPD), and average nearest-neighbor distance (ses.MNTD) to test whether the history of relationships between species in the community is influenced by inundation. We used the phylogenetic endemism (PE) metric to verify the existence of taxa with restricted distribution. Linear regressions were used to test whether phylogenetic metrics have a significant relationship with the variables: maximum flood height, maximum water table depth, and maximum flood amplitude. The results show that forests subject to prolonged seasonal flooding have reduced taxon richness, low phylogenetic diversity, and random distribution of lineages within communities. On the other hand, terra-firme riparian forests showed higher rates of taxon richness, diversity, and phylogenetic dispersion, in addition to greater phylogenetic endemism. These results indicate that seasonal and predictable soil flooding filters tree lineages along the hydrographic gradient. Different adaptations to root waterlogging are likely requirements for colonization in these environments and may represent an important factor in the diversification of tree lineages in the Amazon biome.

Impact of soil moisture regimes on greenhouse gas emissions, soil microbial biomass, and enzymatic activity in long-term fertilized paddy soil

Two potent greenhouse gases that are mostly found in agricultural soils are methane and nitrous oxide. Therefore, we investigated the effect of different moisture regimes on microbial stoichiometry, enzymatic activity, and greenhouse gas emissions in long-term paddy soils. The treatments included a control (CK; no addition), chemical fertilizer (NPK), and NPK + cattle manure (NPKM) and two moisture regimes such as 60% water-filled pore spaces (WFPS) and flooding. The results revealed that 60% water-filled pore spaces (WFPS) emit higher amounts of N2O than flooded soil, while in the case of CH4 the flooded soil emits more CH4 emission compared to 60% WFPS. At 60% WFPS higher N2O flux values were recorded for control, NPK, and NPKM which are 2.3, 3.1, and 3.5 µg kg−1, respectively. In flooded soil, the CH4 flux emission was higher, and the NPKM treatment recorded the maximum CH4 emissions (3.8 µg kg−1) followed by NPK (3.2 µg kg−1) and CK (1.7 µg kg−1). The dissolved organic carbon (DOC) was increased by 15–27% under all flooded treatments as compared to 60% WPFS treatments. The microbial biomass carbon, nitrogen, and phosphorus (MBC, MBN, and MBP) significantly increased in the flooded treatments by 8–12%, 14–21%, and 4–22%, respectively when compared to 60% WFPS. The urease enzyme was influenced by moisture conditions, and significantly increased by 42–54% in flooded soil compared with 60% WFPS while having little effect on the β-glucosidase (BG) and acid phosphatase (AcP) enzymes. Moreover DOC, MBC, and pH showed a significant positive relationship with cumulative CH4, while DOC showed a significant relationship with cumulative N2O. In the random forest model, soil moisture, MBC, DOC, pH, and enzymatic activities were the most important factors for GHG emissions. The PLS-PM analysis showed that soil properties and enzymes possessed significantly directly impacted on CH4 and N2O emissions, while SMB had indirect positive effect on CH4 and N2O emissions.

Nitrate sources and transformations in a river-reservoir system: Response to extreme flooding and various land use

Nitrate (NO3−) pollution poses a global aquatic threat, promoting eutrophication and endangering human health. Large floods can swiftly drive significant nitrogen load into rivers and downstream water bodies, nevertheless, precisely quantifying NO3− sources in watersheds with complex land use patterns remains challenging. In June 2020, heavy and persistent rainfall triggered severe floods across southeastern China, causing Lake Qiandao, the largest reservoir in this region, to reach its highest recorded level. This study investigated NO3− sources and transformations within the Xin'an River-Lake Qiandao system, particularly focusing on the impact of the catastrophic summer flooding event. Through extensive sampling, we identified a distinct nitrogen concentration gradient: from the pristine Xin'an River source, characterized by 95 % forest cover and consistently low nitrogen levels for the initial 125 km, to a gradual rise as the river traversed human-impacted regions, culminating in peak concentrations within residential and agricultural areas. Isotopic analysis identified a general upward trend in nitrate stable isotope (δ15N–NO3–) associated with the expansion of agricultural and urban lands. Mean values of δ15N–NO3– gradually increased from headwaters and forest-dominant catchments (+2.88 ‰) to agricultural regions (+6.64 ‰) and residential areas (+7.10 ‰). A Bayesian modeling identified that during the flood season, soil erosion and chemical fertilizers were the primary contributors, collectively accounting for 74 % of NO3− sources in the Xin'an River. However, accumulated sewage in tributaries and the overflow of sewage from treatment plants, exacerbated by the flood, significantly impacted Lake Qiandao, particularly in densely populated urban areas, contributing 53 % of the total NO3− input. Additionally, NO3− levels and isotopic values in Lake Qiandao were influenced by a mixture of sources and nitrogen cycling processes, including nitrification and algae assimilation following the flood event. In contrast, during baseflow conditions, the contribution of domestic sewage and livestock wastewaters increased to 41 % in the upper river, while Lake Qiandao remained affected by non-point source pollution, with soil erosion and chemical fertilizers contributing 58 % to the total nitrogen pollution. This study sheds light on the complex dynamics of NO3− dynamics within river–reservoir systems, particularly in the context of extreme flooding, emphasizing the critical need for comprehensive water quality management strategies along the entire watershed.