Monthly water samples were collected from the lower Mississippi and Pearl Rivers between January 2009 and August 2011 to investigate the heterogeneity in the dynamic variations of dissolved organic carbon (DOC), colloidal organic carbon, chromophoric and fluorescence dissolved organic matter (CDOM and FDOM), PARAFAC-derived fluorescent components, and other optical properties including spectral slope, specific UV absorbance (SUVA), and fluorescence indices between the two contrasting river systems. The lower Mississippi River exhibits relatively lower concentrations of DOC (306 ± 41 μM C) and CDOM (27.9 ± 5.7 m−1 at 254 nm), featuring lower aromaticity (indicated by SUVA254) and apparent molecular weight (or higher spectral slope) with weak seasonal variability. The Pearl River, in contrast, has elevated levels of DOC (537 ± 212 μM C) and CDOM (66.4 ± 31.4 m−1), characterized by higher aromaticity, higher molecular weight, and significant seasonality, primarily originating from soil-derived allochthonous sources. The abundance of the >1 kDa colloidal DOC was, on average, 58 ± 3 % of the bulk DOC in the lower Mississippi River and 68 ± 6 % in the lower Pearl River. The >1 kDa high-molecular weight DOM (HMW-DOM) consistently had lower spectral slope and biological index (BIX) values, but higher humification index (HIX) values compared to both bulk DOM and low-molecular-weight DOM (LMW-DOM) counterparts. These trends could be representative of other similar large and small rivers. Four PARAFAC-derived fluorescent components (three humic-like and one protein-like) were identified for both rivers. A positive correlation between discharge and terrestrial humic-like fluorescent components indicated their dominant allochthonous sources, while the protein-like component decreased with increasing discharge, consistent with its autochthonic source and a dilution effect during high flow seasons. The occurrence of large flood events during the sampling period contributed to large DOC pulses, with DOM of higher aromaticity and HMW-DOM. This has important implications for coastal ocean ecosystems, which are increasingly impacted by river flooding events under changing climate conditions. Our results also provide an improved understanding of DOM dynamics in two representative rivers and establish a baseline dataset for future studies to assess changes in sources and composition of DOM and their impacts on the coastal ocean in response to climate, hydrological, and anthropogenic influences.