Flexible Ligand Research Articles

A flexible ligand and halogen engineering enable one phosphor-based full-color persistent luminescence in hybrid perovskitoids.

Color-tunable room temperature phosphorescent (RTP) materials have raised wide interest due to their potential application in the fields of encryption and anti-counterfeiting. Herein, a series of CdX2-organic hybrid perovskitoids, (H-apim)CdX3 and (apim)CdX2 (denoted as CdX-apim1 and CdX-apim2, apim = 1-(3-aminopropyl)imidazole, X = Cl, Br), were synthesized using apim with both rigid and flexible groups as ligands, which exhibit naked-eye detectable RTP with different durations and colors (from cyan to red) by virtue of different halogen atoms, coordination modes and the coplanar configuration of flexible groups. Interestingly, CdCl-apim1 and CdX-apim2 both exhibit excitation wavelength-dependent RTP properties, which can be attributed to the multiple excitation of imidazole/apim, the diverse interactions with halogen atoms, and aggregated state of imidazoles. Structural analysis and theoretical calculations confirm that the aminopropyl groups in CdCl-apim1 do not participate in luminescence, while those in CdCl-apim2 are involved in luminescence including both metal/halogen to ligand charge transfer and twisted intramolecular charge transfer. Furthermore, we demonstrate that these perovskitoids can be applied in multi-step anti-counterfeiting, information encryption and smart ink fields. This work not only develops a new type of perovskitoid with full-color persistent luminescence, but also provides new insight into the effect of flexible ligands and halogen engineering on the wide-range modulation of RTP properties.

Flexible NHC-aryloxido aluminum complex and its zwitterionic imidazolium aluminate precursor in ring-opening polymerization of ε-caprolactone.

Anionic donor-functionalized NHC (N-heterocyclic carbene) complexes of Al are rare. We report one such case here, an NHC-aryloxido AlMe2 complex [Al(L)Me2] (2), following a stepwise synthesis from the proligand [HO-4,6-tBu2-C6H2-2-CH2{CH(NCHCHNAr)}]Br [LH2Br; Ar = 2,6-iPr2-C6H3 (Dipp)] and AlMe3via the zwitterionic intermediate [Al(LH)Me2Br] (1). The ligand's flexibility in 2 is evident from the conformational fluxionality revealed by VT-1H NMR spectroscopic analysis. The ∠O-Al-C (ca. 100.5°) bite angle is also wider than the ∠O-Ti-C (ca. 80.6°) as seen in our recently reported Ti complex [Ti(L)(NMe2)2Br]. DFT analysis showed that the CNHC-Al bond is significantly ionic, as is the CNHC-Ti bond. Both 1 and 2 are active in the ring-opening polymerization (ROP) of ε-caprolactone (CL). 2, similar to [Ti(L)(NMe2)2Br], exhibits bifunctional MLC-type monomer activation, but only at an elevated temperature. However, the 2/BnOH combination is catalytically active at room temperature, likely through a zwitterionic [Al(LH)Me2(OBn)]. The 1/BnOH combination follows a similar mechanism but surprisingly at a faster rate.

The rigidity and chelation effect of ligands on the hydrogen evolution reaction catalyzed by Ni(II) complexes.

With increasing interest in nickel-based electrocatalysts, three heteroleptic Ni(II) dithiolate complexes with the general formula [Ni(II)L(L')2] (1-3), L = 2-(methylene-1,1'-dithiolato)-5,5'-dimethylcyclohexane-1,3-dione and L' = triphenylphosphine (1), 1,1'-bis(diphenylphosphino)ferrocene (DPPF) (2), and 1,2-bis(diphenylphosphino)ethane (DPPE) (3), have been synthesized and characterized by various spectroscopic techniques (UV-vis, IR, 1H, and 31P{1H} NMR) as well as the electrochemical method. The molecular structure of complex 2 has also been determined by single-crystal X-ray crystallography. The crystal structure of complex 2 reveals a distorted square planar geometry around the nickel metal ion with a NiP2S2 core. The cyclic voltammograms reveal a small difference in the redox properties of complexes (ΔE° = 130 mV) while the difference in the catalytic half-wave potential becomes substantial (ΔEcat/2 = 670 mV) in the presence of 15 mM CF3COOH. The common S^S-dithiolate ligand provides stability, while the rigidity effect of other ligands (DPPE (3) > DPPF (2) > PPh3 (1)) regulates the formation of the transition state, resulting in the NiIII-H intermediate in the order of 1 > 2 > 3. The foot-of-the-wave analysis supports the widely accepted ECEC mechanism for Ni-based complexes with the first protonation step as a rate-determining step. The electrocatalytic proton reduction activity follows in the order of complex 1 > 2 > 3. The comparatively lower overpotential and higher turnover frequency of complex 1 are attributed to the flexibility of the PPh3 ligand, which favours the easy formation of a transition state.

An all-rounder aminoguanidine based ligand, its unusual anionic zinc(ii) and cadmium(ii) coordination complexes and their biological implications

The versatility of the ligand by protonating and deprotonating in the same medium yields unparallel complexes, one of which is more potent against E. coli than the standard ciprofloxacin, and opens-up new possibilities in coordination chemistry.

Controlled and sequential single-electron reduction of the uranyl dication.

A flexible tripodal pyrrole-imine ligand (H3L) has been used to facilitate the controlled and sequential single-electron reductions of the uranyl dication from the U(VI) oxidation state to U(V) and further to U(IV), processes that are important to understanding the reduction of uranyl and its environmental remediation. The uranyl(VI) complexes UO2(HL)(sol) (sol = THF, py) were straightforwardly accessed by the transamination reaction of H3L with UO2{N(SiMe3)2}2(THF)2 and adopt 'hangman' structures in which one of the pyrrole-imine arms is pendant. While deprotonation of this arm by LiN(SiMe3)2 causes no change in uranyl oxidation state, single-electron reduction of uranyl(VI) to uranyl(V) occurred on addition of two equivalents of KN(SiMe3)2 to UO2(HL)(sol). The potassium cations of this new [UVO2(K2L)]2 dimer were substituted by transmetalation with the appropriate metal chloride salt, forming the new uranyl(V) tetra-heterometallic complexes, [UVO2Zn(L)(py)2]2 and [UVO2Ln(Cl)(L)(py)2]2 (Ln = Y, Sm, Dy). The dimeric uranyl(V)-yttrium complex underwent further reduction and chloride abstraction to form the tetrametallic U(IV) complex [UIVO2YIII(py)]2, so highlighting the adaptability of this ligand to stabilise a variety of different uranium oxidation states.

Extended isomerism in heteronuclear metal–organic frameworks: synthetic strategies and crystal structures of lanthanide–cobalt–oxydiacetate systems

Unprecedented expanded isomerism in porous heteronuclear compounds built from a flexible oxydiacetato ligand, lanthanide ions and cobalt(ii) comprising 16 new compounds categorized into two different structural arrays.

Enhancing visual luminescence detection of tetracycline antibiotics through regulation of nitrogen-containing ligand and antenna effect of Ln3+

Two water-stable luminescent Cd-MOFs were synthesized from flexible carboxylate ligand and two N-containing ligands with different rigidity and flexibility, which demonstrated different luminescence responses toward antibiotics TC/OTC.

Electrocatalytic hydrogen evolution of MOF-derived materials based on conjugated or unconjugated ligands

Two organic ligands, one rigid and one flexible, were used to construct two cobalt MOFs, respectively. The HER performance of the derived materials based on the rigid ligand is better than that of derivatives based on the flexible organic ligand.

DiffBindFR: an SE(3) equivariant network for flexible protein-ligand docking.

Molecular docking, a key technique in structure-based drug design, plays pivotal roles in protein-ligand interaction modeling, hit identification and optimization, in which accurate prediction of protein-ligand binding mode is essential. Conventional docking approaches perform well in redocking tasks with known protein binding pocket conformation in the complex state. However, in real-world docking scenario without knowing the protein binding conformation for a new ligand, accurately modeling the binding complex structure remains challenging as flexible docking is computationally expensive and inaccurate. Typical deep learning-based docking methods do not explicitly consider protein side chain conformations and fail to ensure the physical plausibility and detailed atomic interactions. In this study, we present DiffBindFR, a full-atom diffusion-based flexible docking model that operates over the product space of ligand overall movements and flexibility and pocket side chain torsion changes. We show that DiffBindFR has higher accuracy in producing native-like binding structures with physically plausible and detailed interactions than available docking methods. Furthermore, in the Apo and AlphaFold2 modeled structures, DiffBindFR demonstrates superior advantages in accurate ligand binding pose and protein binding conformation prediction, making it suitable for Apo and AlphaFold2 structure-based drug design. DiffBindFR provides a powerful flexible docking tool for modeling accurate protein-ligand binding structures.

Retraction of “Two mixed-ligand coordination polymers based on 2,5-thiophenedicarboxylic acid and flexible N-donor ligands: The protective effect on periodontitis via reducing the release of IL-1β and TNF-α”

Retraction of “Two mixed-ligand coordination polymers based on 2,5-thiophenedicarboxylic acid and flexible N-donor ligands: The protective effect on periodontitis via reducing the release of IL-1β and TNF-α”

Intercalation of pyrazolone-based oxalamide metal complexes into Na-montmorillonite for catalytic liquid-phase oxidation of phenol using H2O2.

The intercalation of pyrazolone-based oxalamide metal complexes into Na-montmorillonite (Na-MMT) for catalytic liquid-phase oxidation of phenol using H2O2 was undertaken by a flexible ligand method using metal ions including Mn(II), Zn(II), and Sn(II). First, the metal ions were exchanged with the sodium ions of Na-MMT, and then these metal ions were complexed with a new pyrazolone-based oxalamide ligand. The intercalated metal complexes were characterized by Fourier transform infrared spectroscopy, X-ray diffraction, scanning electron microscopy, energy-dispersive X-ray spectroscopy, elemental analysis, and thermogravimetric analysis. Phenol was successfully oxidized by heterogeneous catalysts based on Mn(II), Zn(II), and Sn(II) pyrazolone-based oxalamide complexes intercalated into Na-MMT. These heterogeneous catalysts catalyze the liquid-phase oxidation of phenol using H2O2 to catechol as the major product and hydroquinone and benzoquinone as the minor products. The Mn(II) and Zn(II) complexes intercalated into Na-MMT showed better activity than the Sn(II) complex intercalated into Na-MMT and the reaction without the catalyst. It has been shown that some metal ion complexes intercalated into Na-MMT are active catalysts for liquid-phase oxidation of phenol with hydrogen peroxide.

Isoreticularity in a gallate-based metal–organic framework: Impact of the extension of the ligand on the porosity, stability and adsorption of CO2

Isoreticularity is one of the key aspects in the design of new Metal-Organic Frameworks (MOFs), but has been up to now scarcely applied to gallate (1,2-3-trioxobenzene) ligands. With the aim of building new materials isoreticular to the M(Hngal) (H4gal = gallic acid) small pore MOF series, we here designed the new elongated mixed gallate-carboxylate ligand 4-(3,4,5-trihydroxyphenyl)benzoic acid (H4bpgal). A thorough investigation of its reactivity with MgCl2 has led to the successful isolation of the targeted material Mg(H2bpgal)·n(solv) (solv = water, methanol, ethanol). A combination of experimental tools, including single-crystal X-ray diffraction (XRD), powder XRD, and 1H and 13C solid-state NMR studies confirmed the close structural relationship with the smaller analogue, including the presence of acidic OH sites arising from phenol groups bound to Mg cations. Contrary to the small pore analogue, Mg(H2bpgal) is of limited interest for gas capture, because of its moderate stability upon exposure to dioxygen and low affinity for CO2, both resulting from the intrinsic characteristics of the ligand (redox activity and flexibility, respectively). Nevertheless, it presents among the highest surface area and pore volume reported to date for a gallate MOF (1475 m2 g−1 and 0.59 cm3 g−1, respectively); these characteristics might be of interest in other fields of applications, including electrochemical energy storage or combined controlled drug release.

Dynamic Configuration on a Chiral-at-Rhodium Catalyst Featuring a Flexible Tetradentate Ligand.

The unique dynamic configuration of an enantioselective chiral-at-metal catalyst based on Rh(III) and a non-chiral tetradentate ligand is described and resolved. At room temperature, the catalyst undergoes a dynamic configuration process leading to the formation of two interconvertible metal-stereoisomers, remarkably without racemization. Density functional theory (DFT) calculations indicate that this metal-isomerization proceeds via a concerted transition state, which features a trigonal bipyramidal geometry stabilized by the tetradentate ligand. Furthermore, the resolved enantiopure complex shows high catalytic enantioinduction in the Friedel-Crafts reaction, achieving enantiomeric ratios as high as 99 : 1.

Incorporating flexible sulfonate-imidazolium ion pair-functionalized MOF in cross-linked polyvinyl alcohol membrane for achieving superprotonic conduction

Designing high-performance metal–organic frameworks (MOFs) based proton exchange membranes for fuel cells simultaneously with a high-density proton carrier and continuous hydrogen-bonded networks remains a challenge. The present study has endeavored to construct a crystalline Cu-MOF with chemically stable based on flexible sulfonate-imidazolium ion pair ligand in which flexible sulfonic acid chains orderly anchoring on the channel wall. Moreover, the cross-linked polyvinyl alcohol (CL-PVA) was choosing as matrix to enhance the practicality of Cu-MOF synergistically in fuel cells due to its hydrophilic and hydrophobic structure distribution. The CL-PVA/Cu-MOF-X (X = 5, 10, 15, 20 wt%) composite membranes exhibit strong water affinity and thus significantly enhanced water uptake which also along with good mechanical properties. The highly hydrophilic hydroxyl groups in CL-PVA and the sulfonic acid groups in Cu-MOF form a continuous hydrogen-bonded pathway, which result to the superprotonic conduction. Among them, CL-PVA/Cu-MOF-15 shows the highest proton conductivity of 2.4 × 10-2 S cm−1 but the smallest activation energy Ea (41 kJ/mol) at 80 °C and 90 % RH, indicating more easily transportation of H+. The single-cell power density of CL-PVA/Cu-MOF-15 is up to 49.3 mW cm−2, which will open a new avenue for the practical application of proton-conducting MOFs in proton exchange membrane fuel cells.

A Photoelectromagnetic 3D Metal-Organic Framework from Flexible Tetraarylethylene-Backboned Ligand and Dynamic Copper-Based Coordination Chemistry.

Porous frameworks that display dynamic responsiveness are of interest in the fields of smart materials, information technology, etc. In this work, a novel copper-based dynamic metal-organic framework [Cu3TTBPE6(H2O)2] (H4TTBPE = 1,1,2,2-tetrakis(4″-(1H-tetrazol-5-yl)-[1,1″-biphenyl]-4-yl)ethane), denoted as HNU-1, is reported which exhibits modulable photoelectromagnetic properties. Due to the synergetic effect of flexible tetraarylethylene-backboned ligands and diverse copper-tetrazole coordination chemistries, a complex 3D tunneling network is established in this MOF by the layer-by-layer staggered assembly of triplicate monolayers, showing a porosity of 59%. These features further make it possible to achieve dynamic transitions, in which the aggregate-state MOF can be transferred to different structural states by changing the chemical environment or upon heating while displaying sensitive responsiveness in terms of light absorption, photoluminescence, and magnetic properties.

Using Metadynamics to Reveal Extractant Conformational Free Energy Landscapes.

Understanding the impact of extractant functionalization on metal-binding energetics in liquid-liquid extraction is essential to guide the development of better separation processes. Traditionally, computational extractant design uses electronic structure calculations on metal-ligand clusters to determine the metal-binding energy of the lowest energy state. Although highly accurate, this approach does not account for all of the relevant physics encountered under experimental conditions. Such methodologies often neglect entropic contributions such as temperature effects and ligand flexibility, in addition to approximating solvent-extractant interactions with implicit solvent models. In this study, we use classical molecular dynamics simulations with an advanced sampling method, metadynamics, to map out extractant molecule conformational free energies in the condensed phase. We generate the complete conformational landscape in solution for a family of bidentate malonamide-based extractants with different functionalizations of the headgroup and the side chains. In particular, we show how such alkyl functionalization reshapes the free energy landscape, affecting the free energy penalty of organizing the extractant into the cis-like metal-binding conformation from the trans-like conformation of the free extractant in solution. Specifically, functionalizing alkyl tails to the center of the headgroup has a greater influence on increasing molecular rigidity and disfavoring the binding conformation than functionalizing side chains. These findings are consistent with trends in metal-binding energetics based on experimentally reported distribution ratios. We also consider a different bidentate extractant molecule, carbamoylmethylphosphine oxide, and show how the choice of solvent can further reshape the conformational energetic landscape. This study demonstrates the feasibility of using molecular dynamics simulations with advanced sampling techniques to investigate extractant conformational energetics in solution, which, more broadly, will enable extractant design that accounts for entropic effects and explicit solvation.

Supramolecularly Dimeric Assemble of Planar Cu13 Clusters Controlled by the Length of Spacers of Diphosphine.

The controlled formation of dimeric clusters is challenging. Three copper(I) clusters, labeled as {Cu13[o-Ph(C≡C)2]6(L)4}(ClO4), were synthesized by using three different ligands, including 1,4-bis(diphenylphosphino)butane (dppb), 1,5-bis(diphenylphosphino)pentane (dpppe), and bis(diphenylphosphino)hexane (dpph). By increasing the flexibility of alkyl spacers in the diphosphine ligands, the relative positions of the phenyl rings could be optimized to achieve efficient packing with maximized intercluster interactions. In the crystal structures, cluster 1 with dppb ligands did not display interlocked structures. In contrast, cluster 2 with dpppe ligands formed supramolecularly interlocked polymers through weak π-π interactions and C-H···π interactions, while cluster 3 employing dpph ligands formed supramolecularly interlocked dimers with strong π-π interactions and C-H···π interactions. The supramolecular dimer of 3 was also evidenced by analyses through electrospray ionization mass spectrometry and transmission electron microscopy. Density functional theory calculation was used to understand the electronic structure and transitions. Supramolecularly interlocked polymers/dimers with rigid structures exhibited higher quantum efficiency. The solution of these clusters demonstrated remarkable aggregation-induced emission enhancements. This study presents unique examples of planar luminescent copper clusters, featuring the first serial dialkynyl-protected cluster. It underlines the importance of ligand flexibility in creating supramolecular cluster dimers.

Electrical detection and modulation of magnetism in a Dy-based ferroelectric single-molecule magnet

Electrical control of magnetism in single-molecule magnets with peculiar quantum magnetic behaviours has promise for applications in molecular electronics and quantum computing. Nevertheless, such kind of magnetoelectric effects have not been achieved in such materials. Herein, we report the successful realization of significant magnetoelectric effects by introducing ferroelectricity into a dysprosium-based single-molecule magnet through spatial cooperation between flexible organic ligands and halide ions. The stair-shaped magnetization hysteresis loop, alternating current susceptibility, and magnetic relaxation can be directly modulated by applying a moderate electric field. Conversely, the electric polarization can be modulated by applying a small magnetic field. In addition, a resonant magnetodielectric effect is clearly observed, which enables detection of quantum tunnelling of magnetization by a simple electrical measurement. The integration of ferroelectricity into single-molecule magnets not only broadens the family of single-molecule magnets but also makes electrical detection and modulation of the quantum tunnelling of magnetization a reality.

Catalytic Water Oxidation by Ruthenium Complexes with Pyridine Alkoxide Ligands

AbstractLigand design is crucial for the design of robust and efficient molecular water oxidation catalysts (WOCs) based on metal complexes. Herein we report the water oxidation studies of a series of Ru WOCs bearing bipyridine dialkoxide ligands with different substituents. Combined with density functional theory (DFT) calculations, the proposed water oxidation mechanism is bimolecular coupling (I2M) of two seven‐coordinate (CN7) Ru=O species. The use of bulky phenyl groups on the planar alkoxide ligand helps to stabilize the high oxidation CN7 intermediates, without loss of ligand flexibility. This strategy may be useful for the design of other active WOCs.

Long Time CO2 Storage Under Ambient Conditions in Isolated Voids of a Porous Coordination Network Facilitated by the "Magic Door" Mechanism.

A coordination network containing isolated pores without interconnecting channels is prepared from a tetrahedral ligand and copper(I) iodide. Despite the lack of accessibility, CO2 is selectively adsorbed into these pores at 298K and then retained for more than one week while exposed to the atmosphere. The CO2 adsorption energy and diffusion mechanism throughout the network are simulated using Matlantis, which helps to rationalize the experimental results. CO2 enters the isolated voids through transient channels, termed "magic doors", which can momentarily appear within the structure. Once inside the voids, CO2 remains locked in limiting its escape. This mechanism is facilitated by the flexibility of organic ligands and the pivot motion of cluster units. In situ powder X-ray diffraction revealed that the crystal structure change is negligible before and after CO2 capture, unlike gate-opening coordination networks. The uncovered CO2 sorption and retention ability paves the way for the design of sorbents based on isolated voids.