Fleshy Algae Research Articles

Escaping the benthos with Coral Reef Arks: effects on coral translocation and fish biomass.

Anthropogenic stressors like overfishing, land based runoff, and increasing temperatures cause the degradation of coral reefs, leading to the loss of corals and other calcifiers, increases in competitive fleshy algae, and increases in microbial pathogen abundance and hypoxia. To test the hypothesis that corals would be healthier by moving them off the benthos, a common garden experiment was conducted in which corals were translocated to midwater geodesic spheres (hereafter called Coral Reef Arks or Arks). Coral fragments translocated to the Arks survived significantly longer than equivalent coral fragments translocated to Control sites (i.e., benthos at the same depth). Over time, average living coral surface area and volume were higher on the Arks than the Control sites. The abundance and biomass of fish were also generally higher on the Arks compared to the Control sites, with more piscivorous fish on the Arks. The addition of Autonomous Reef Monitoring Structures (ARMS), which served as habitat for sessile and motile reef-associated organisms, also generally significantly increased fish associated with the Arks. Overall, the Arks increased translocated coral survivorship and growth, and exhibited knock-on effects such as higher fish abundance.

A decade of study on the condition of western Cuban coral reefs, with low human impact.

The long-time study of coral reefs with low human impacts can provide information on the effects of regional pressures like climate change, and is an opportunity to document how these pressures are reflected in coral communities. An example of minimal local anthropogenic impacts are the Guanahacabibes coral reefs, located in the westernmost region of Cuba. The objectives of this study were: to evaluate the temporal variability of six benthic biological indicators of coral reefs, and to explore the possible relationship between predictive abiotic variables and biological response variables. Four coral reef sites were sampled between 2008 and 2017, to analyze biological indicators (living coral cover, fleshy algae index, coral species richness, coral species abundance, coral trait groups species abundance, Functional Reef Index). Seven abiotic variables (wave exposure, sea surface temperature, degree heating week, chlorophyll-a concentration, particulate organic carbon, photosynthetically available radiation, and the diffuse attenuation coefficient) were compiled between 2007 and 2016, from remote sensing datasets, to analyze their relationship with the biological indicators. Permanova statistical analysis was used to evaluate trends in biological variables between sites and years, and Routine Analysis Based on Linear Distances (DISTLM) was used to explore some dependencies between biotic and abiotic variables. We found significant variability in the temporal analysis, with a decrease in living coral cover, a decline in the predominance of the branching and massive framework reef-building species, a decline in Orbicella species abundance, and an increase in the fleshy algae index. Some abiotic variables (average of degree heating weeks, standard deviation of the diffuse attenuation coefficient, average of the sea surface temperature, among others) significantly explained the variability of biological indicators; however, determination coefficients were low. Certain decrease in the functionality of the coral reef was appreciated, taking into account the predominance of secondary and nom-massive framework reef-building species in the last years. A weak association between abiotic and biological variables was found in the temporal analysis. The current scenario of the condition of the coral reefs seems to be regulated by the global effects of climate change, weakly associated effects, and in longer terms.

Establishing historical benthic cover levels for coral reefs of the Western Indian Ocean

Data on coral reef health prior to large-scale disturbances are unavailable in most parts of the world including the Western Indian Ocean (WIO). Robust coral reef health baselines could improve the understanding of changes occurring to reefs in the 21st century and prevent the “shifting baseline” phenomenon, enabling researchers and managers to evaluate the success of management measures, and set achievable targets for new interventions. To make this data accessible to the WIO coral reef community, a literature review was conducted to identify and compile data collected prior to 2008 for two principal measures of reef health; hard coral and fleshy algae cover. Baseline hard coral and algae cover levels were calculated using data from selected sites that were known to be in healthy condition prior to (or just after) the 1998 bleaching event. Mayotte had the highest mean hard coral cover with 80.9 % (95 % bootstrap confidence interval (95 % CI) =65.8-95.9 %), followed by Comoros with 62.1 % (95 % CI=53.2-78.8 %) and Madagascar with 55.6 % (95 % CI=49.8-62.5 %). Mean fleshy algae cover varied from 8.4 % in Mayotte (95 % CI=2.4-17.4 %) to 35.4 % in Mozambique (95 % CI=20.6-50.8 %). At a regional scale, mean baseline hard coral cover is estimated to be between 41 and 47 %; reefs were in a coral-dominant state, with more than double the amount of coral compared to algae.

Microbiome of Sri Lankan Coral Reefs: An Indian Ocean Island Subjected to a Gradient of Natural and Anthropogenic Impacts

Coral reefs around Sri Lanka have coexisted with human communities for thousands of years and are a continual source of food, economic productivity, and tourism. Although these reef systems sustain nearby populations, little is known about the presence or functional role of microbial communities on reefs dominated by hard corals or fleshy algae. Coral reef benthos cover was recorded, and reef-associated water samples were collected, sequenced and analyzed from seven coral reefs around Sri Lanka. Microbial metagenomes were analyzed to reveal both the taxonomic and metabolic makeup of the microbial communities present at each site. A metagenomic analysis of microbial phyla showed that Alphaproteobacteria and Gammaproteobacteria were most abundant, constituting up to 79.4% of microbial communities. At the order level, Rhodobacterales dominated the microbial communities across all sites, with the exception of the Paraviwella coral reef, where the order Alteromonadales dominated. A Principal Component Analysis (PCA) was performed using metagenomic sequence data to find the possible trends of interactions and drivers of taxonomic and metabolic community structure. This study is the first microbial metagenome dataset of coral reef associated water from the Indian Ocean continental island, Sri Lanka. These data further confirm the need for a comprehensive study of reefs in Sri Lanka aimed at elucidating the processes involved in microbial energy utilization.

Settlement and post-settlement survival of Orbicella annularis and Orbicella faveolata (Scleractinia: Merulinidae) on substrates with coatings

Introduction: One of the main bottlenecks in restoration projects based on sexual reproduction is post-settlement survival, mainly due to competition for substrate with fleshy algae and predation. Therefore, substrates of different shapes and materials have been created and tested, seeking to optimize these processes with attractive surfaces for the larvae and structures where the recruits are protected from predation, and competition is reduced. 
 Objective: To improve settlement and post-settlement survival of two important Caribbean reef-building corals, using different coatings on substrates. 
 Methods: To determine whether substrate coatings properties are favourable to larval settlement in Orbicella annularis, and O. faveolata, collected in Puerto Morelos, Mexican Caribbean, we evaluated their settlement for three weeks on six coatings with a combination of properties. Each coating was designed to provide a combination of two out of three properties: 1) water repellence (hydrophobicity), 2) phosphorescence-based colour, and 3) mineral-enriched surface chemistry. In a separate experiment larvae settlement was tested using coatings with a single property. Finally, we determined the post-settlement survival of O. annularis and O. faveolata on the different coatings for seven weeks. 
 Results: The combination of high hydrophobicity and light blue phosphorescent microparticles and high hydrophobicity and red-orange phosphorescent microparticles resulted in a higher settlement of O. annularis and O. faveolata when compared with other coatings (30.8 - 66.7 % higher). No significant differences were found in the number of larval settled when the water-repellence and the phosphorescence-based were evaluated independently. Post-settlement survival time on substrates was low, with a maximum of 34 days after settlement for O. annularis and 42 days for O. faveolata. 
 Conclusions: In terms of the larval settlement, the combination of the coatings properties appears to play an essential role in the choice of microhabitat for both O. annularis and O. faveolata. But individually these properties did not generate an advantage in the larval settlement. Moreover, some chemical components associated with the coatings may be counterproductive to the survival of the polyps over time.

Small-scale oxygen distribution patterns in a coral reef

One mechanism giving fleshy algae a competitive advantage over corals during reef degradation is algal-induced and microbially-mediated hypoxia (typically less than 69.5 µmol oxygen L−1). During hypoxic conditions oxygen availability becomes insufficient to sustain aerobic respiration in most metazoans. Algae are more tolerant of low oxygen conditions and may outcompete corals weakened by hypoxia. A key question on the ecological importance of this mechanism remains unanswered: How extensive are local hypoxic zones in highly turbulent aquatic environments, continuously flushed by currents and wave surge? To better understand the concert of biological, chemical, and physical factors that determine the abundance and distribution of oxygen in this environment, we combined 3D imagery, flow measurements, macro- and micro-organismal abundance estimates, and experimentally determined biogenic oxygen and carbon fluxes as input values for a 3D bio-physical model. The model was first developed and verified for controlled flume experiments containing coral and algal colonies in direct interaction. We then developed a three-dimensional numerical model of an existing coral reef plot off the coast of Curaçao where oxygen concentrations for comparison were collected in a small-scale grid using fiberoptic oxygen optodes. Oxygen distribution patterns given by the model were a good predictor for in situ concentrations and indicate widespread localized differences exceeding 50 µmol L-1 over distances less than a decimeter. This suggests that small-scale hypoxic zones can persist for an extended period of time in the turbulent environment of a wave- and surge- exposed coral reef. This work highlights how the combination of three-dimensional imagery, biogenic fluxes, and fluid dynamic modeling can provide a powerful tool to illustrate and predict the distribution of analytes (e.g., oxygen or other bioactive substances) in a highly complex system.

The Bryozoan Margaretta cereoides as Habitat-Former in the Coralligenous of Marzamemi (SE Sicily, Mediterranean Sea)

Although several bryozoans are considered habitat-former species, allowing colonisation by epibionts and promoting biodiversity, studies dealt so far with only some, usually constructional, species. In this context, the present study focuses on the epibiosis found on the erect mineralised but flexible species Margaretta cereoides, contributing with some macroalgae to the canopy formation on a coralligenous build-up collected at 36.7 m depth offshore Marzamemi (Ionian Sea, Mediterranean) in the frame of the project CRESCIBLUREEF. Focusing on bryozoans and serpulids we documented high diversity (species richness) on the investigated substrata (M. cereoides, Flabellia petiolata, Peyssonnelia rubra, Osmundaria volubilis and all other fleshy algae including Phyllophora crispa). Diversity, total number of colonies/specimens hosted, and number of colonies/specimens per cm2 are higher on M. cereoides than on algae, possibly in relation with the morphology, robustness and persistence of the surface offered by the bryozoan contrasting with the flexible and ephemeral nature of most algae, often provided with chemical defenses. Bryozoan and even more serpulid epibiont diversity on M. cereoides is also higher than those reported for studied species in the Mediterranean and for Flustra foliacea from North Europe.

Stories told by corals, algae, and sea-urchins in a Mesoamerican coral reef: degradation trumps succession.

Understanding the mechanisms that allow the permanence of coral reefs and the constancy of their characteristics is necessary to alleviate the effects of chronic environmental changes. After a disturbance, healthy coral reefs display trajectories that allow regaining coral cover and the establishment of framework building corals. Through a comparative approach, in a patch reef partially affected by a ship grounding, we analyzed the successional trajectories in affected and unaffected sectors. Fleshy algae (which do not promote the recruitment of corals) dominated the reef surface irrespective of the impact of the ship grounding incident. Acropora species had near-zero contributions to community structure, whereas non-framework building corals like Porites sp. had a slightly higher recruitment. Cover of coral and calcareous crustose algae decreased over time, and neither the latter nor adult coral colonies had any effect on the occurrence probabilities of small corals. Sea urchin (Diadema antillarum) densities were generally low, and thus unlikely to contribute to reverting algal dominance. The successional trajectories of the community in the impacted and non-impacted sectors of the coral patch reef agree with the inhibition successional model, leading to the development of a degraded state dominated by fleshy algae. It is probable that the stability and resilience of this degraded state are high due to the ability of fleshy algae to monopolize space, along with low coral recovery potential.

Spatial and temporal variations of macroalgal vegetation in the north-western Red Sea

Abstract Macroalgae play a vital role in marine ecosystems, but human effects are threatening the composition and structure of algal communities. In the present investigation, the spatial and temporal variations of species composition, functional groups and percentage macroalgal cover were studied in relation to seasonal fluctuations of some physicochemical parameters, to determine the ecological status of macroalgae in coastal waters along the coast of the northwestern part of the Red Sea, from November 2020 to October 2021. Fifty-five species of macroalgae were collected and identified from the sites studied. Five functional groups of macroalgae were recognized. Among these were two turf-forming species, 34 species of upright fleshy algae, and three crustose algae. There was a large variation in the cover, as well as in the species richness and assemblage structure of the macroalgae in different sites and seasons. Seasonal changes, determined by environmental conditions, led to small changes in macroalgal cover at different sites, with the growth of some brown macroalgae suppressed by high sea temperatures, whereas some green and red macroalgae, increased in response to increasing temperature and salinity.

Fleshy red algae mats act as temporary reservoirs for sessile invertebrate biodiversity

Many coastal ecosystems, such as coral reefs and seagrass meadows, currently experience overgrowth by fleshy algae due to the interplay of local and global stressors. This is usually accompanied by strong decreases in habitat complexity and biodiversity. Recently, persistent, mat-forming fleshy red algae, previously described for the Black Sea and several Atlantic locations, have also been observed in the Mediterranean. These several centimetre high mats may displace seagrass meadows and invertebrate communities, potentially causing a substantial loss of associated biodiversity. We show that the sessile invertebrate biodiversity in these red algae mats is high and exceeds that of neighbouring seagrass meadows. Comparative biodiversity indices were similar to or higher than those recently described for calcifying green algae habitats and biodiversity hotspots like coral reefs or mangrove forests. Our findings suggest that fleshy red algae mats can act as alternative habitats and temporary sessile invertebrate biodiversity reservoirs in times of environmental change.

A Draft Reference Genome Assembly of the Critically Endangered Black Abalone, Haliotis cracherodii.

The once abundant black abalone, Haliotis cracherodii, is a large, long-lived grazing marine mollusk that inhabits the rocky intertidal along the coast of California. The species has experienced dramatic declines since the mid-1980s largely due to the fatal bacterial disease called withering syndrome, leading to the collapse of an economically important fishery and to its inclusion into the IUCN listing as a critically endangered species. In some places impacted by the disease, populations of black abalone have declined by more than 90%, prompting population crashes associated with very little recruitment of new individuals and changes to intertidal communities. Habitats that were dominated by crustose coralline algae and bare rock have become dominated instead by fleshy algae and sessile invertebrates. Here, we present the first high-quality black abalone reference genome, assembled with PacBio HiFi long-reads and assembled with Dovetail Omni-C data to generate a scaffold-level assembly. The black abalone reference genome will be an essential resource in understanding the evolutionary history of this species as well as for exploring its current levels of genetic diversity and establishing future management and restoration plans.

Plicidentine in the oral fangs of parrotfish (Scarinae, Labriformes).

Parrotfish play important ecological roles in coral reef and seagrass communities across the globe. Their dentition is a fascinating object of study from an anatomical, functional and evolutionary point of view. Several species maintained non-interlocked dentition and browse on fleshy algae, while others evolved a characteristic beak-like structure made of a mass of coalesced teeth that they use to scrape or excavate food off hard limestone substrates. While parrotfish use their highly specialized marginal teeth to procure their food, they can also develop a series of large fangs that protrude from the upper jaw, and more rarely from the lower jaw. These peculiar fangs do not participate in the marginal dentition and their function remains unclear. Here we describe the morphology of these fangs and their developmental relationship to the rest of the oral dentition in the marbled parrotfish (Leptoscarus vaigiensis), the star-eye parrotfish (Calotomus carolinus), and the palenose parrotfish (Scarus psittacus). Through microtomographic and histological analyses, we show that some of these fangs display loosely folded plicidentine along their bases, a feature that has never been reported in parrotfish. Plicidentine is absent from the marginal teeth and is therefore exclusive to the fangs. Parrotfish fangs develop a particular type of simplexodont plicidentine with a pulpal infilling of alveolar bone at later stages of dental ontogeny. The occurrence of plicidentine and evidence of extensive tooth wear, and even breakage, lead us to conclude that the fangs undergo frequent mechanical stress, despite not being used to acquire food. This strong mechanical stress undergone by fangs could be linked either to forced contact with congeners or with the limestone substrate during feeding. Finally, we hypothesize that the presence of plicidentine in parrotfish is not derived from a labrid ancestor, but is probably a recently evolved trait in some parrotfish taxa, which may even have evolved convergently within this subfamily.

Vulnerability to collapse of coral reef ecosystems in the Western Indian Ocean

Ecosystems worldwide are under increasing threat. We applied a standardized method for assessing the risk of ecosystem collapse, the International Union for Conservation of Nature (IUCN) Red List of Ecosystems, to coral reefs in the Western Indian Ocean (WIO), covering 11,919 km2 of reef (~5% of the global total). Our approach combined indicators of change in historic ecosystem extent, ecosystem functioning (hard corals, fleshy algae, herbivores and piscivores) and projected sea temperature warming. We show that WIO coral reefs are vulnerable to collapse at the regional level, while in 11 nested ecoregions they range from critically endangered (islands, driven by future warming) to vulnerable (continental coast and northern Seychelles, driven principally by fishing pressure). Responses to avoid coral reef collapse must include ecosystem-based management of reefs and adjacent systems combined with mitigating and adapting to climate change. Our approach can be replicated across coral reefs globally to help countries and other actors meet conservation and sustainability targets set under multiple global conventions—including the Convention on Biological Diversity’s post-2020 global biodiversity framework and the United Nations’ Sustainable Development Goals.

Dynamics of large benthic foraminiferal assemblages: A tool to foreshadow reef degradation?

Ecological regime shifts in the marine realm have been recorded from a variety of systems and locations around the world. Coral reefs have been especially affected, with their benthic habitat changing from a dominance of stony corals to a dominance of other organisms such as fleshy algae. To detect changes in the benthic habitat of coral reefs, simple tools applicable on a global scale are necessary for future monitoring programs. Hence, the aim of this research is to explore the hypothesis that shifts in assemblages of large benthic foraminifera (LBF) can detect early signs of degradation in the reef benthic habitat. To do so, data on living assemblages of LBF collected between 1997 and 2018 at 12 islands in the Spermonde Archipelago (South Sulawesi, Indonesia) were analyzed. Foraminiferal specimens were morphologically identified to the species level and statistical analyses performed to assess changes in their assemblage composition. A clear temporal shift was observed. Typical foraminiferal assemblages in a coral-dominated (e.g., Amphistegina lobifera, Calcarina spengleri, Heterostegina depressa) and fleshy algae-dominated (e.g., Neorotalia gaimardi, C. mayori) reef habitats were identified and significantly linked to the substrate type. Other species (e.g., Elphidium spp., Peneroplis planatus and Sphaerogypsina globulus) seem to reflect a spatial and temporal gradient of anthropogenic pollution from local inhabited islands and ongoing urban development on the mainland. Hence communities of LBF consistently follow gradual shifts in environmental conditions. Additionally to foraminiferal assemblages being an indicator for actual reef condition, closely monitoring LBF may provide early information on reef degradation, in time to take action against identified stressors (e.g., eutrophication or intensive fishing) at local and regional scales. The circumtropical distribution of LBF is such that they can be included worldwide in reef monitoring programs, conditional to calibration to the regional species pool.

Benthic micro- and macro-community succession and coral recruitment under overfishing and nutrient enrichment.

Herbivory and nutrient availability are fundamental drivers of benthic community succession in shallow marine systems, including coral reefs. Despite the importance of early community succession for coral recruitment and recovery, studies characterizing the impact of top-down and bottom-up drivers on micro- and macrobenthic communities at scales relevant to coral recruitment are lacking. Here, a combination of tank and field experiments were used to assess the effects of herbivore exclusion and nutrient enrichment on micro- to macrobenthic community succession and subsequent coral recruitment success. Herbivore exclusion had the strongest effect on micro- and macrobenthic community succession, including a community shift toward copiotrophic and potentially opportunistic/pathogenic microorganisms, an increased cover of turf and macroalgae, and decreased cover of crustose coralline algae. Yet, when corals settled prior to the development of a macrobenthic community, rates of post-settlement survival increased when herbivores were excluded, benefiting from the predation refugia provided by cages during their vulnerable early post-settlement stage. Interestingly, survival on open tiles was negatively correlated with the relative abundance of the bacterial order Rhodobacterales, an opportunistic microbial group previously associated with stressed and diseased corals. Development of micro- and macrobenthic communities in the absence of herbivory, however, led to reduced coral settlement. In turn, there were no differences in post-settlement survival between open and caged treatments for corals settled on tiles with established benthic communities. As a result, open tiles experienced marginally higher recruitment rates, driven primarily by the higher initial number of settlers on open tiles compared to caged tiles. Overall, we reveal that the primary interaction driving coral recruitment is the positive effect of herbivory in creating crustose coralline algae (CCA)-dominated habitats, free of fleshy algae and associated opportunistic microbes, to enhance coral settlement. The negative direct and indirect impact of fish predation on newly settled corals was outweighed by the positive effect of herbivory on the initial rate of coral settlement. In turn, the addition of nutrients further altered benthic community succession in the absence of herbivory, reducing coral post-settlement survival. However, the overall impact of nutrients on coral recruitment dynamics was minor relative to herbivory.

Physiological Differences in Bleaching Response of the Coral Porites astreoides Along the Florida Keys Reef Tract During High-Temperature Stress

The Florida Keys reef tract (FKRT) has a unique geological history wherein Holocene sea-level rise and bathymetry interacted, resulting in a reef-building system with notable spatial differences in reef development. Overprinted on this geologic history, recent global and local stressors have led to degraded reefs dominated by fleshy algae, soft corals, and sponges. Here, we assessed how coral physiology (calcification rate, tissue thickness, reproduction, symbiosis, and bleaching) varies seasonally (winter vs. summer) and geographically using 40 colonies of the mustard hill coral Porites astreoides from four sites across 350 km along the FKRT from 2015 to 2017. The study coincided with a high-temperature event in late summer 2015 that caused heterogeneous levels of coral bleaching across sites. Bleaching severity differed by site, with bleaching response more aligned with heat stress retroactively calculated from local degree heating weeks than those predicted by satellites. Despite differences in temperature profiles and bleaching severity, all colonies hosted Symbiodiniaceae of the same genus (formerly Clade A and subtypes). Overall, P. astreoides at Dry Tortugas National Park, the consistently coolest site, had the highest calcification rates, symbiont cell densities, and reproductive potential (all colonies were reproductive, with most planula larvae per polyp). Corals at Dry Tortugas and Fowey Rocks Light demonstrated strong seasonality in net calcification (higher in summer) and did not express visual or partial-mortality responses from the bleaching event; in contrast, colonies in the middle and southern part of the upper keys, Sombrero Key and Crocker Reef, demonstrated similar reduced fitness from bleaching, but differential recovery trajectories following the heat stress. Identifying reefs, such as Dry Tortugas and possibly Fowey Rocks Light that may serve as heat-stress refugia, is important in selecting candidate sites for adaptive reef-management strategies, such as selective propagation and assisted gene flow, to increase coral-species adaptation to ocean warming.

Three-Dimensional Molecular Cartography of the Caribbean Reef-Building Coral Orbicella faveolata

All organisms host a diversity of associated viruses, bacteria, and protists, collectively defined as the holobiont. While scientific advancements have enhanced the understanding of the functional roles played by various components of the holobiont, there is a growing need to integrate multiple types of molecular data into spatially and temporally resolved frameworks. To that end, we mapped 16S and 18S rDNA metabarcoding, metatranscriptomics, and metabolomic data onto three-dimensional reconstructions of coral colonies to examine microbial diversity, microbial gene expression, and biochemistry on two colonies of the ecologically important, reef-building coral,Orbicella faveolataand their competitors (i.e., adjacent organisms interacting with the corals: fleshy algae, turf algae, hydrozoans, and other corals). Overall, no statistically significant spatial patterns were observed among the samples for any of the data types; instead, strong signatures of the macroorganismal hosts (e.g., coral, algae, hydrozoa) were detected, in the microbiome, the transcriptome, and the metabolome. The 16S rDNA analysis demonstrated higher abundance of Firmicutes in the coral microbiome than in its competitors. A single bacterial amplicon sequence variant from the genusClostridiumwas found exclusively in allO. faveolatasamples. In contrast to microbial taxa, a portion of the functionally annotated bacterial RNA transcripts (6.86%) and metabolites (1.95%) were ubiquitous in all coral and competitor samples. Machine learning analysis of microbial transcripts revealed elevated T7-like cyanophage-encoded photosystem II transcripts inO. faveolatasamples, while sequences involved in bacterial cell division were elevated in turf algal and interface samples. Similar analysis of metabolites revealed that bacterial-produced antimicrobial and antifungal compounds were highly enriched in coral samples. This study provides insight into the spatial and biological patterning of the coral microbiome, transcriptome, and metabolome.

Experimental assessment of the impacts of ocean acidification and urchin grazing on benthic kelp forest assemblages

Ocean acidification (OA) is likely to differentially affect the biology and physiology of calcifying and non-calcifying taxa, thereby potentially altering key ecological interactions (e.g., facilitation, competition, predation) in ways that are difficult to predict from single-species experiments. We used a two-factor experimental design to investigate how multispecies benthic assemblages in southern California kelp forests respond to OA and grazing by the purple sea urchin, Strongylocentrotus purpuratus. Settlement tiles accrued natural mixed assemblages of algae and invertebrates in a kelp forest off San Diego, CA for one year before being exposed to OA and grazing in a laboratory experiment for two months. Space occupying organisms were identified and pooled into six functional groups: calcified invertebrates, non-calcified invertebrates, calcified algae, fleshy algae, sediment, and bare space for subsequent analyses of community structure. Interestingly, communities that developed on separate tile racks were unique, despite being deployed close in space, and further changes in community structure in response to OA and grazing depended on this initial community state. On Rack 1, we found significant effects of both pCO2 and grazing with elevated pCO2 increasing cover of fleshy algae, but sea urchin grazers decreasing cover of fleshy algae. On Rack 2, we found a ~ 35% higher percent cover of sediment on tiles reared in ambient pCO2 but observed ~27% higher cover of bare space in the high pCO2 conditions. On Rack 3, we found an average of 45% lower percent cover of calcified sessile invertebrates at ambient pCO2 than in high pCO2 treatments on Rack 3. Net community calcification was 137% lower in elevated pCO2 treatments. Kelp sporophyte densities on tiles without urchins were 74% higher than on tiles with urchins and kelp densities were highest in the elevated pCO2 treatment. Urchin growth and grazing rates were 49% and 126% higher under ambient than high pCO2 conditions. This study highlights consistent negative impacts of OA on community processes such as calcification and grazing rates, even though impacts on community structure were highly context-dependent.

Characteristics of shallow and mesophotic environments of the Pemba Channel, Tanzania: Implications for management and conservation

Information on the spatial distribution of habitats and vulnerable species is important for conservation planning. In particular, detailed knowledge on connectivity of marine ecosystems in relation to depth and seafloor characteristics is crucial for any proposed conservation and management actions. Yet, the bulk of the seafloor remains under-sampled, unstudied and unmapped, thereby limiting our understanding of connections between shallow and deep-water communities. Recent studies on mesophotic coral ecosystems (MCEs) have highlighted the Western Indian Ocean as a particularly understudied marine region. Here we utilise an autonomous underwater vehicle (AUV) to collect in-situ temperature, oxygen concentration, bathymetry, acoustic backscatter and photographic data on benthic communities from shallow (<30 m) and mesophotic (30–150 m) depths at selected sites in the Greater Pemba Channel, Tanzania. Further, we use generalised additive models (GAMs) to determine useful predictors of substratum (hard and sand) and benthic community type (coral, turf algae, fleshy algae, fish). Our results revealed the presence of a complex seafloor characterised by pockmarks, steep slopes, submarine walls, and large boulders. Photographs confirmed the presence of MCE composed of corals, algae and fishes on the eastern margins of the Pemba Channel. The GAMs on the presence and absence of benthic community explained 35%–91% of the deviance in fish and fleshy algae assemblages, respectively. Key predictors of the distribution of hard substrata and the coral reef communities were depth, showing the upper boundary of MCEs present at 30–40 m, and seafloor slope that showed more occurrences on steep slopes. The upper 100 m of water column had stable temperatures (25–26 °C) and oxygen concentrations (220–235 μmol/l). We noted the presence of submarine walls, steeply inclined bedrock, which appeared to support a highly bio-diverse community that may be worthy of particular conservation measures. Our results also highlight the capability of using marine robotics, particularly autonomous vehicles, to fill the knowledge gap for areas not readily accessible by divers or with surface vessels, and their potential application for the initial survey and subsequent monitoring of Marine Protected Areas.

Red List of Ecosystems: Risk assessment of coral ecosystems in the Colombian Caribbean

Drivers of biodiversity loss have generated an increased risk of ecosystem collapse in the Anthropocene. Coral ecosystems are among the most diverse ecosystems, but at the same time also part of the most vulnerable and threatened ecosystems worldwide. This is the case of Wider and Colombian Caribbean coral ecosystems, which has a reduction of 50%, with extreme cases of 85% of their cover over the past decades. The methodology of the Red List of Ecosystems was implemented, for the first time, on the Colombian Caribbean to provide the assessment of collapse risk for coral ecosystems. To do this, the spatial and functional components of the ecosystem were analyzed using two of the Red List criteria (B and D) at three spatial scales (national, ecoregional, and biotic). For the former component, restricted distribution metrics were applied, and monitoring data of 20-year period (SIMAC) were used for the latter. Also, as a novel issue in coral functional risk assessment, macroalgae cover was considered, along with the percentage of live coral cover. The results indicated differences in the level of collapse risk depending on the spatial scale, whereby the national scale hid the most important risk dynamics of ecoregions and biotic scale overestimated the spatial risk. However, all ecosystem units at the three scales were assess from vulnerable to critically endangered, which means high-risk categories. Functional spatio-temporal analysis showed a general high-risk stability for the two variables chosen (fleshy algae cover and live corals) since 1998. These were complementary and necessary to propose the hypothesis of phase shift in the Colombian oceanic region, the area with the highest functional risk in the Colombian Caribbean. Finally, practical management recommendations were made based on the final assessment proposed by the risk map of coral ecosystems.