This study investigates the solubility of ten primary food flavonoids in both conventional solvents and natural deep eutectic solvents (NADES), utilizing five choline chloride-based NADES. These NADES were formulated with lactic acid, ascorbic acid, urea, sorbitol, and 1,2-propanediol as hydrogen bond donors (HBD). Conventional solvents used in the comparison included water, menthol, and ethanol. The flavonoids studied—catechin, daidzein, quercetin, naringenin, luteolin, genistein, kaempferol, apigenin, diosmetin, and chrysin—were analyzed for solubility and extractability via both solvents. Flavonoid solubility was observed to vary based on both the structural characteristics of the flavonoid and the choice of HBD. Notably, catechin demonstrated the highest solubility across all solvent systems, followed by naringenin and quercetin. Among the NADES systems, the blend based on 1,2-propanediol notably enhanced the solubility of quercetin and luteolin to 53.4 mg/mL and 26.9 mg/mL, respectively, surpassing their solubility in conventional solvents. The empirical findings were consistent with theoretical predictions made using the COSMO-RS method, confirming the efficacy of NADES in solubilizing food flavonoids more effectively than conventional solvents.